Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

34009554 .. 34010135

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGACAGTCGACGTAGTTTCTTTGACTCCAGCAGCTTCTATGGAGAAGGCACAGCAACAGCAGCAGCATTCCTCTAATTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACTCTATCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGCCGGAGGAGAGCTCTCCGAGGAGGAAGCGCAAGCGGCCGTGGAGGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGAAGAGTTCCAGAAGTTGATGGAGGCCACAAATGGAGACGAGGAGAACAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGCTGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGTAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

193

Amino Acids

21.33

Weight (kDa)

4.71

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	56 - 118	4.6e-14	EF-hand domain pair
EF-hand_5	PF13202	58 - 82	6.8e-07	EF hand
EF-hand_8	PF13833	70 - 119	3.2e-09	EF-hand domain pair
EF-hand_7	PF13499	130 - 192	8.1e-12	EF-hand domain pair
EF-hand_8	PF13833	144 - 192	1.9e-10	EF-hand domain pair
EF-hand_1	PF00036	167 - 192	1.2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	487
AciI	CCGC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	335, 457
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	7 cut(s)	35, 94, 156, 172, 265, 394, 453
AluI	AGCT	7 cut(s)	35, 94, 156, 172, 265, 394, 453
Alw21I	GWGCWC	3 cut(s)	174, 267, 396
Alw26I	GTCTC	1 cut(s)	363
Ama87I	CYCGRG	2 cut(s)	173, 430
AoxI	GGCC	2 cut(s)	288, 357
ApeKI	GCWGC	7 cut(s)	32, 61, 64, 153, 162, 165, 435
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	3 cut(s)	132, 283, 489
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	2 cut(s)	173, 430
BanII	GRGCYC	4 cut(s)	174, 267, 396, 431
BarI	GAAGNNNNNNTAC	2 cut(s)	94, 126
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	3 cut(s)	174, 267, 396
BbvI	GCAGC	7 cut(s)	44, 73, 76, 165, 174, 177, 422
BccI	CCATC	5 cut(s)	305, 311, 346, 533, 568
BceAI	ACGGC	2 cut(s)	84, 275
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	8 cut(s)	33, 62, 65, 154, 163, 166, 288, 436
BlsI	GCNGC	8 cut(s)	34, 63, 66, 155, 164, 167, 289, 437
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	2 cut(s)	173, 430
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	312, 391, 453
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	4 cut(s)	249, 281, 473, 505
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	84, 222, 270, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	84, 222, 270, 291
BseGI	GGATG	5 cut(s)	316, 322, 327, 417, 468
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	409
BseRI	GAGGAG	3 cut(s)	273, 287, 389
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	7 cut(s)	44, 73, 76, 165, 174, 177, 422
BseYI	CCCAGC	2 cut(s)	325, 466
Bsh1236I	CGCG	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	290, 359
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	3 cut(s)	174, 267, 396
BsiHKCI	CYCGRG	2 cut(s)	173, 430
BsiSI	CCGG	2 cut(s)	224, 255
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	290, 359
BsoBI	CYCGRG	2 cut(s)	173, 430
Bsp1286I	GDGCHC	4 cut(s)	174, 267, 396, 431
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	290, 359
BspCNI	CTCAG	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	570
BssECI	CCNNGG	4 cut(s)	84, 222, 270, 291
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	4 cut(s)	7, 108, 206, 212
Bst6I	CTCTTC	2 cut(s)	330, 452
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	170, 285, 451
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	5 cut(s)	316, 322, 327, 417, 468
BstFNI	CGCG	1 cut(s)	487
BstHHI	GCGC	3 cut(s)	132, 283, 489
BstMAI	GTCTC	1 cut(s)	363
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 159, 162, 287, 296, 435, 486
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	7 cut(s)	44, 73, 76, 165, 174, 177, 422
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	290, 359
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	5 cut(s)	316, 322, 327, 417, 468
Cac8I	GCNNGC	3 cut(s)	170, 285, 451
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	3 cut(s)	132, 283, 489
CviAII	CATG	5 cut(s)	159, 511, 520, 571, 579
DdeI	CTNAG	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	330, 452
EarI	CTCTTC	2 cut(s)	330, 452
Ecl136II	GAGCTC	3 cut(s)	172, 265, 394
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	4 cut(s)	174, 267, 396, 431
Eco32I	GATATC	1 cut(s)	219
Eco52I	CGGCCG	1 cut(s)	288
Eco53kI	GAGCTC	3 cut(s)	172, 265, 394
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	2 cut(s)	173, 430
EcoICRI	GAGCTC	3 cut(s)	172, 265, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	4 cut(s)	174, 267, 396, 431
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	5 cut(s)	162, 514, 523, 574, 582
FaiI	YATR	8 cut(s)	41, 160, 417, 440, 512, 521, 572, 580
FatI	CATG	5 cut(s)	158, 510, 519, 570, 578
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	8 cut(s)	33, 62, 65, 154, 163, 166, 288, 436
FokI	GGATG	5 cut(s)	323, 329, 334, 424, 475
FriOI	GRGCYC	4 cut(s)	174, 267, 396, 431
Fsp4HI	GCNGC	8 cut(s)	33, 62, 65, 154, 163, 166, 288, 436
GlaI	GCGC	3 cut(s)	131, 282, 488
GluI	GCNGC	8 cut(s)	33, 62, 65, 154, 163, 166, 288, 436
GsaI	CCCAGC	2 cut(s)	329, 470
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	290, 359
HapII	CCGG	2 cut(s)	224, 255
HhaI	GCGC	3 cut(s)	132, 283, 489
Hin1II	CATG	5 cut(s)	162, 514, 523, 574, 582
Hin6I	GCGC	3 cut(s)	130, 281, 487
HinP1I	GCGC	3 cut(s)	130, 281, 487
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	5 cut(s)	25, 142, 482, 514, 567
HpaII	CCGG	2 cut(s)	224, 255
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	10, 104
Hpy188I	TCNGA	6 cut(s)	237, 271, 304, 398, 411, 566
Hpy188III	TCNNGA	4 cut(s)	114, 175, 343, 571
Hpy8I	GTNNAC	2 cut(s)	10, 104
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	40, 172
HpyCH4III	ACNGT	4 cut(s)	7, 108, 206, 212
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	162, 438, 504
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 159, 162, 287, 296, 435, 486
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	162, 514, 523, 574, 582
HspAI	GCGC	3 cut(s)	130, 281, 487
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	8 cut(s)	42, 237, 253, 268, 311, 356, 452, 459
Lsp1109I	GCAGC	7 cut(s)	44, 73, 76, 165, 174, 177, 422
LweI	GCATC	3 cut(s)	312, 391, 453
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	3 cut(s)	102, 347, 469
MhlI	GDGCHC	4 cut(s)	174, 267, 396, 431
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	3 cut(s)	19, 151, 491
MmeI	TCCRAC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	182
MspI	CCGG	2 cut(s)	224, 255
MspR9I	CCNGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	67
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	7 cut(s)	61, 159, 162, 287, 296, 435, 486
NciI	CCSGG	1 cut(s)	224
NlaIII	CATG	5 cut(s)	162, 514, 523, 574, 582
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	514, 567
PkrI	GCNGC	8 cut(s)	34, 63, 66, 155, 164, 167, 289, 437
PleI	GAGTC	3 cut(s)	19, 150, 490
PpsI	GAGTC	3 cut(s)	19, 150, 490
Psp124BI	GAGCTC	3 cut(s)	174, 267, 396
PspFI	CCCAGC	2 cut(s)	325, 466
SacI	GAGCTC	3 cut(s)	174, 267, 396
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	8 cut(s)	33, 62, 65, 154, 163, 166, 288, 436
SchI	GAGTC	3 cut(s)	19, 151, 491
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	4 cut(s)	174, 267, 396, 431
SfaNI	GCATC	3 cut(s)	312, 391, 453
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	287
SstI	GAGCTC	3 cut(s)	174, 267, 396
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	7, 108, 206, 212
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	9, 80, 113, 140, 174, 525
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	514, 567
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	7 cut(s)	32, 61, 64, 153, 162, 165, 435
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.