Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

1019867 .. 1021787

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGACAAACTAGCACAATACGAGCGTGTTTTCAATCAATTCGATGGCAATGGAGACGGGAAGATATCACCTTTGGAGCTCCAACAATGTGTCGAGGCAATAGGAGGTGAGCTTTCGTCGTCGGAGGCTGAGGCGGCGGTGGAGTACTTGGACTCCGACAGAGACGGGCTGCTGGGTTTCGACGACTTCGTTAAGTTCGTTGAAGGAGGAGATGAGGAAGAGAAGGTGAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGATGGATGTGGGTGCATTACGCCCAAAAGTTTGAAGAGAATGCTGAGTAGACTTGGTGAATCCAGGAGTGTTGATGAGTGCAAGGTCATGATTTCTAGGTTTGATCTCAATGGAGATGGTGTCCTTAATTTTGATGAGTTTAAGCGAAATCGTGGAGGCTCAAGGCCACATTCTAAGGGCCACCGGCGGAAGGACAGCCACGGCAAGGTTTGCACCACCAAAGGCCCCGGGGATCGCGAGATCGGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCAGGACCGGCTTGGATACGACCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

191

Amino Acids

21.39

Weight (kDa)

4.94

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	7 - 35	4e-06	EF-hand domain
EF-hand_7	PF13499	8 - 67	4e-12	EF-hand domain pair
EF-hand_5	PF13202	10 - 31	1.4e-07	EF hand
EF-hand_8	PF13833	19 - 68	4e-06	EF-hand domain pair
EF-hand_7	PF13499	77 - 136	6.4e-13	EF-hand domain pair
EF-hand_6	PF13405	78 - 107	9e-06	EF-hand domain
EF-hand_8	PF13833	92 - 136	5.7e-09	EF-hand domain pair
EF-hand_1	PF00036	114 - 137	6.4e-06	EF hand domain
TCP	PF03634	151 - 191	9.6e-11	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	501
AciI	CCGC	4 cut(s)	134, 137, 451, 525
AclWI	GGATC	1 cut(s)	504
AfaI	GTAC	2 cut(s)	146, 257
AfiI	CCNNNNNNNGG	2 cut(s)	454, 469
AgsI	TTSAA	4 cut(s)	34, 203, 298, 533
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	79, 112
AluI	AGCT	2 cut(s)	79, 112
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	48, 156
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	428, 442, 487
ApeKI	GCWGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	442, 488, 550
AsuC2I	CCSGG	2 cut(s)	492, 493
AsuHPI	GGTGA	4 cut(s)	60, 119, 238, 332
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	550
BanII	GRGCYC	2 cut(s)	81, 513
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	38, 260, 374
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	554
BcnI	CCSGG	2 cut(s)	492, 493
BcoDI	GTCTC	2 cut(s)	48, 156
BfaI	CTAG	3 cut(s)	11, 360, 574
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	2 cut(s)	135, 170
BlsI	GCNGC	2 cut(s)	136, 171
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	328, 492, 493
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	442, 488, 550
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	3 cut(s)	328, 492, 493
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	2 cut(s)	492, 493
BsaJI	CCNNGG	4 cut(s)	463, 490, 491, 492
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 469
Bse118I	RCCGGY	2 cut(s)	447, 552
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	463, 490, 491, 492
BseGI	GGATG	2 cut(s)	271, 275
BseLI	CCNNNNNNNGG	2 cut(s)	454, 469
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	120, 299
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	430, 444, 489
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	448, 492, 553
BslI	CCNNNNNNNGG	2 cut(s)	454, 469
BsmAI	GTCTC	2 cut(s)	48, 156
BsmBI	CGTCTC	2 cut(s)	48, 156
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	430, 444, 489
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	81, 513
Bsp143I	GATC	3 cut(s)	367, 496, 504
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	4 cut(s)	134, 137, 451, 525
BspANI	GGCC	3 cut(s)	430, 444, 489
BspCNI	CTCAG	2 cut(s)	121, 300
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	2 cut(s)	447, 552
BssAI	RCCGGY	2 cut(s)	447, 552
BssECI	CCNNGG	4 cut(s)	463, 490, 491, 492
BssMI	GATC	3 cut(s)	367, 496, 504
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	213, 293
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	129, 308, 438
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	271, 275
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	3 cut(s)	370, 499, 507
BstMAI	GTCTC	2 cut(s)	48, 156
BstMBI	GATC	3 cut(s)	367, 496, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 474, 524, 553
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	3 cut(s)	326, 490, 491
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	430, 444, 489
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	271, 275
BtuMI	TCGCGA	1 cut(s)	501
CciI	TCATGA	1 cut(s)	351
Cfr10I	RCCGGY	2 cut(s)	447, 552
Cfr13I	GGNCC	3 cut(s)	442, 488, 550
Cfr9I	CCCGGG	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	145, 256
CviAII	CATG	3 cut(s)	262, 352, 544
CviQI	GTAC	2 cut(s)	145, 256
DdeI	CTNAG	3 cut(s)	129, 308, 438
DpnI	GATC	3 cut(s)	369, 498, 506
DpnII	GATC	3 cut(s)	367, 496, 504
Eam1104I	CTCTTC	2 cut(s)	213, 293
EarI	CTCTTC	2 cut(s)	213, 293
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	2 cut(s)	81, 513
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	81, 513
Esp3I	CGTCTC	2 cut(s)	48, 156
FaeI	CATG	3 cut(s)	265, 355, 547
FaiI	YATR	3 cut(s)	263, 353, 545
FatI	CATG	3 cut(s)	261, 351, 543
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	135, 170
FokI	GGATG	2 cut(s)	278, 282
FriOI	GRGCYC	2 cut(s)	81, 513
Fsp4HI	GCNGC	2 cut(s)	135, 170
FspBI	CTAG	3 cut(s)	11, 360, 574
GluI	GCNGC	2 cut(s)	135, 170
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	430, 444, 489
HapII	CCGG	3 cut(s)	448, 492, 553
Hin1II	CATG	3 cut(s)	265, 355, 547
HinfI	GANTC	2 cut(s)	152, 323
HpaII	CCGG	3 cut(s)	448, 492, 553
HphI	GGTGA	4 cut(s)	60, 119, 238, 332
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	124, 157
Hpy188III	TCNNGA	2 cut(s)	352, 500
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	4 cut(s)	121, 124, 185, 518
HpyAV	CCTTC	3 cut(s)	197, 217, 448
HpyCH4V	TGCA	4 cut(s)	279, 345, 477, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 474, 524, 553
HpyF3I	CTNAG	3 cut(s)	129, 308, 438
Hsp92II	CATG	3 cut(s)	265, 355, 547
Kzo9I	GATC	3 cut(s)	367, 496, 504
LmnI	GCTCC	2 cut(s)	76, 84
LpnPI	CCDG	7 cut(s)	158, 313, 340, 461, 505, 533, 566
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	3 cut(s)	11, 360, 574
MalI	GATC	3 cut(s)	369, 498, 506
MboI	GATC	3 cut(s)	367, 496, 504
MboII	GAAGA	3 cut(s)	73, 230, 310
MhlI	GDGCHC	2 cut(s)	81, 513
MluCI	AATT	3 cut(s)	38, 391, 533
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	102, 106, 180
MnlI	CCTC	9 cut(s)	88, 98, 118, 124, 200, 208, 231, 235, 413
MseI	TTAA	4 cut(s)	192, 249, 390, 405
MspI	CCGG	3 cut(s)	448, 492, 553
MspR9I	CCNGG	3 cut(s)	328, 492, 493
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	134, 474, 524, 553
NciI	CCSGG	2 cut(s)	492, 493
NdeII	GATC	3 cut(s)	367, 496, 504
NlaIII	CATG	3 cut(s)	265, 355, 547
NlaIV	GGNNCC	1 cut(s)	490
NruI	TCGCGA	1 cut(s)	501
NspI	RCATGY	1 cut(s)	547
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	136, 171
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	3 cut(s)	442, 488, 550
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	2 cut(s)	146, 257
RsaNI	GTAC	2 cut(s)	145, 256
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	192, 249, 390, 405
SatI	GCNGC	2 cut(s)	135, 170
Sau3AI	GATC	3 cut(s)	367, 496, 504
Sau96I	GGNCC	3 cut(s)	442, 488, 550
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	328, 492, 493
SduI	GDGCHC	2 cut(s)	81, 513
SetI	ASST	8 cut(s)	73, 81, 109, 114, 228, 351, 365, 474
SgrAI	CRCCGGYG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	550
SmaI	CCCGGG	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	3 cut(s)	38, 391, 533
SsiI	CCGC	4 cut(s)	134, 137, 451, 525
SspMI	CTAG	3 cut(s)	11, 360, 574
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	326, 490, 491
TaqI	TCGA	3 cut(s)	42, 93, 180
TasI	AATT	3 cut(s)	38, 391, 533
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	4 cut(s)	192, 249, 390, 405
Tru9I	TTAA	4 cut(s)	192, 249, 390, 405
TseI	GCWGC	1 cut(s)	169
TspMI	CCCGGG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	550
XceI	RCATGY	1 cut(s)	547
XmaI	CCCGGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	3 cut(s)	11, 360, 574
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.