Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003920.1

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

37288 .. 40233

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003920.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggacaaactagcacaatacgagcgtgttttcaatcaattcgatggcaatggagacgggaagatatcacctttggagctccaacaatgtgtcgaggcaataggaggtgagctttcgtcatcggaggctgaggcggcggtggagtacttggactccgacaaagacgggctgctgggtttcgacgacttcgttaagttcgttgaaggaggagatgaggaagagaaggtgaatgatttgagggaggcgtttaagatgtacgacatggatggatgtgggtgcattacgcccaaaagtttgaagaggatgctgagtagacttggtgaatccaggagtgttgatgagtgcaaggtcatgattgctaggtttgatctcaatggagatggtgtcctcaattttgatgagtttaagcctacaaagacactaaatctcactgccatcggatcattgcttgcaacattggaaattcaagcagctcaaacatggtggcatgtacaccaaggagacaacatgtatgaggatgttttcgcaagtgaaaacaagattggacaatgccagcttttgagtagggagggagtggctgaagcatggaaagggtttgcttatgccttggaagggatgtctaacaaagaggctctgcaaaagatcagaaactggaatggtttcgatgatgggtccacagtagaggctaggatcgaagacaaggaatttggagttattagaactccagtgtttagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

245

Amino Acids

27.41

Weight (kDa)

4.51

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	134, 137
AclWI	GGATC	2 cut(s)	448, 698
AcsI	RAATTY	2 cut(s)	462, 704
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	3 cut(s)	146, 257, 492
AfiI	CCNNNNNNNGG	1 cut(s)	612
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	34, 203, 298, 467
AjnI	CCWGG	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	4 cut(s)	79, 112, 473, 556
AluI	AGCT	4 cut(s)	79, 112, 473, 556
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	48, 495
AlwI	GGATC	2 cut(s)	448, 698
AlwNI	CAGNNNCTG	1 cut(s)	651
ApeKI	GCWGC	2 cut(s)	169, 470
ApoI	RAATTY	2 cut(s)	462, 704
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	672
AsuHPI	GGTGA	4 cut(s)	60, 119, 238, 332
AvaII	GGWCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	156, 482
BccI	CCATC	5 cut(s)	38, 260, 374, 443, 662
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	48, 495
BfaI	CTAG	3 cut(s)	11, 360, 687
BisI	GCNGC	3 cut(s)	135, 170, 471
BlsI	GCNGC	3 cut(s)	136, 171, 472
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	496, 606
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	656, 725
Bse3DI	GCAATG	2 cut(s)	55, 443
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	496, 606
BseGI	GGATG	5 cut(s)	271, 275, 309, 523, 621
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseMI	GCAATG	2 cut(s)	55, 443
BseMII	CTCAG	2 cut(s)	120, 299
BseNI	ACTGG	2 cut(s)	656, 725
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	156, 482
BseYI	CCCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	2 cut(s)	48, 495
BsmBI	CGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	367, 440, 642, 690
BspACI	CCGC	2 cut(s)	134, 137
BspCNI	CTCAG	2 cut(s)	121, 300
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	2 cut(s)	448, 698
BsrDI	GCAATG	2 cut(s)	55, 443
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	656, 725
BssECI	CCNNGG	2 cut(s)	496, 606
BssMI	GATC	4 cut(s)	367, 440, 642, 690
BssT1I	CCWWGG	2 cut(s)	496, 606
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	2 cut(s)	213, 293
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	450, 554
BstDEI	CTNAG	2 cut(s)	129, 308
BstF5I	GGATG	5 cut(s)	271, 275, 309, 523, 621
BstKTI	GATC	4 cut(s)	370, 443, 645, 693
BstMAI	GTCTC	2 cut(s)	48, 495
BstMBI	GATC	4 cut(s)	367, 440, 642, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	491, 511
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	156, 482
BstV2I	GAAGAC	1 cut(s)	702
BtsCI	GGATG	5 cut(s)	271, 275, 309, 523, 621
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 732
Cac8I	GCNNGC	2 cut(s)	450, 554
CaiI	CAGNNNCTG	1 cut(s)	651
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	145, 256, 491
CspCI	CAANNNNNGTGG	2 cut(s)	464, 499
CviAII	CATG	6 cut(s)	262, 352, 480, 488, 508, 585
CviQI	GTAC	3 cut(s)	145, 256, 491
DdeI	CTNAG	2 cut(s)	129, 308
DpnI	GATC	4 cut(s)	369, 442, 644, 692
DpnII	GATC	4 cut(s)	367, 440, 642, 690
Eam1104I	CTCTTC	2 cut(s)	213, 293
EarI	CTCTTC	2 cut(s)	213, 293
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	496, 606
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	496, 606
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	496, 606
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	6 cut(s)	265, 355, 483, 491, 511, 588
FaiI	YATR	8 cut(s)	263, 353, 481, 489, 509, 513, 586, 603
FatI	CATG	6 cut(s)	261, 351, 479, 487, 507, 584
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	135, 170, 471
FokI	GGATG	5 cut(s)	278, 282, 316, 530, 628
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	135, 170, 471
FspBI	CTAG	3 cut(s)	11, 360, 687
GluI	GCNGC	3 cut(s)	135, 170, 471
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	708
Hin1II	CATG	6 cut(s)	265, 355, 483, 491, 511, 588
HinfI	GANTC	2 cut(s)	152, 323
HphI	GGTGA	4 cut(s)	60, 119, 238, 332
Hpy166II	GTNNAC	3 cut(s)	314, 493, 675
Hpy188I	TCNGA	4 cut(s)	124, 157, 440, 647
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	314, 493, 675
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	197, 217, 605
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4V	TGCA	4 cut(s)	279, 345, 452, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	129, 308
Hsp92II	CATG	6 cut(s)	265, 355, 483, 491, 511, 588
Kzo9I	GATC	4 cut(s)	367, 440, 642, 690
LmnI	GCTCC	2 cut(s)	76, 84
LpnPI	CCDG	5 cut(s)	158, 313, 340, 566, 637
Lsp1109I	GCAGC	2 cut(s)	156, 482
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	11, 360, 687
MalI	GATC	4 cut(s)	369, 442, 644, 692
MboI	GATC	4 cut(s)	367, 440, 642, 690
MboII	GAAGA	4 cut(s)	73, 230, 310, 707
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	38, 391, 462, 704
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	106, 180
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	3 cut(s)	192, 249, 405
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	367, 440, 642, 690
NlaIII	CATG	6 cut(s)	265, 355, 483, 491, 511, 588
NlaIV	GGNNCC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	491, 511
PagI	TCATGA	1 cut(s)	351
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	136, 171, 472
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	651
RsaI	GTAC	3 cut(s)	146, 257, 492
RsaNI	GTAC	3 cut(s)	145, 256, 491
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	192, 249, 405
SatI	GCNGC	3 cut(s)	135, 170, 471
Sau3AI	GATC	4 cut(s)	367, 440, 642, 690
Sau96I	GGNCC	1 cut(s)	672
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	9 cut(s)	73, 81, 109, 114, 228, 351, 365, 475, 558
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	1 cut(s)	672
Sse9I	AATT	4 cut(s)	38, 391, 462, 704
SsiI	CCGC	2 cut(s)	134, 137
SspMI	CTAG	3 cut(s)	11, 360, 687
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	496, 606
TaaI	ACNGT	1 cut(s)	679
TaqI	TCGA	5 cut(s)	42, 93, 180, 663, 693
TasI	AATT	4 cut(s)	38, 391, 462, 704
TatI	WGTACW	2 cut(s)	144, 490
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	192, 249, 405
Tru9I	TTAA	3 cut(s)	192, 249, 405
TscAI	CASTG	2 cut(s)	436, 732
TseI	GCWGC	2 cut(s)	169, 470
TspRI	CASTG	2 cut(s)	436, 732
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	2 cut(s)	462, 704
XceI	RCATGY	2 cut(s)	491, 511
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	3 cut(s)	11, 360, 687
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.