Rorug07G0170700

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001530
Physical Location & Seq
Reverse (-)
13852536 .. 13864555
12020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0170700.1

Sequence Viewer

Length: 342 bp
ATGTGCATCGTCAACTACAAAAATCAAGAGCATAGGACGGACGCCATATATTGTGATGGGACTGATCCAGAGTGGAATGAGCAACTTCTGTTCACCATAGCTGGTTCAGTTGAAGATCTCAAGATTCGGGTCCATGACGGGGATTACGTTACTGATGAAGAAGTTGGACATTGCTCTATTCCAATAGATAGTCTAGTTGAGACAGGGTACAAAGCGCAAACAGACGCGTCTCCATATGAAGTATGGAGGGGAGATGAAGTCTATGGAGAACTTACCGTTGCCCTCTCTTTTCATCCAGAGGAGGGCCATGATGATGAAGAACATGAAGAAGAGGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.92

Weight (kDa)

4.12

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 2 - 68 1.3e-08 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AclWI GGATC 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 139, 302
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 194, 234
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 130, 304
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 130
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 194, 234
BfaI CTAG 1 cut(s) 194
BglII AGATCT 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 130, 304
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 302
Bse3DI GCAATG 1 cut(s) 169
BseGI GGATG 2 cut(s) 292, 340
BseLI CCNNNNNNNGG 2 cut(s) 139, 302
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 139, 302
BsmAI GTCTC 2 cut(s) 194, 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 64, 115
BspANI GGCC 1 cut(s) 306
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 169
BssMI GATC 2 cut(s) 64, 115
BssNI GRCGYC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 1 cut(s) 42
BstF5I GGATG 2 cut(s) 292, 340
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 67, 118
BstMAI GTCTC 2 cut(s) 194, 234
BstMBI GATC 2 cut(s) 64, 115
BstUI CGCG 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 292, 340
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 130, 304
CseI GACGC 3 cut(s) 50, 216, 233
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 134, 308, 323
CviJI RGCY 2 cut(s) 101, 306
CviKI_1 RGCY 2 cut(s) 101, 306
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 66, 117
DpnII GATC 2 cut(s) 64, 115
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 3 cut(s) 137, 311, 326
FaqI GGGAC 1 cut(s) 73
FatI CATG 3 cut(s) 133, 307, 322
FauNDI CATATG 1 cut(s) 235
FokI GGATG 1 cut(s) 279
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 306
HgaI GACGC 3 cut(s) 50, 216, 233
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 137, 311, 326
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 13, 93
Hpy188III TCNNGA 4 cut(s) 26, 68, 121, 296
Hpy8I GTNNAC 2 cut(s) 13, 93
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 137, 311, 326
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 64, 115
LpnPI CCDG 4 cut(s) 81, 87, 189, 309
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 66, 117
MboI GATC 2 cut(s) 64, 115
MboII GAAGA 5 cut(s) 125, 170, 329, 338, 341
MflI RGATCY 1 cut(s) 115
MluI ACGCGT 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 5 cut(s) 240, 292, 293, 295, 325
MslI CAYNNNNRTG 1 cut(s) 312
MvnI CGCG 1 cut(s) 227
NdeI CATATG 1 cut(s) 235
NdeII GATC 2 cut(s) 64, 115
NlaIII CATG 3 cut(s) 137, 311, 326
NlaIV GGNNCC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 130, 304
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 312
Sau3AI GATC 2 cut(s) 64, 115
Sau96I GGNCC 2 cut(s) 130, 304
SetI ASST 2 cut(s) 103, 150
SfaNI GCATC 1 cut(s) 15
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 171, 252, 270, 281, 330, 339
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.