Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

60092142 .. 60092774

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAAACGCAGAGCAGCTTCTACCGGCGCTCGTGGAACACGCACAAAAGTCCGTTCCAACTTCCAATTGTATATATAAGCTCTACGTGTTTCATGGCTATTCCAATATCGTTTCATTGCAAATCTACTTGAATCGGAGTAACAGAGGATTCGAGCGTGTGTTCAGCTACTTTGATGAAGATGGAGACGGGAAGATCTCACCCTCGGAGCTGAGGAACCGGCTAGGGTTGATAGGAGGAGAGATGCTGCAGAACGAGGCGGAGGTTGCGGTGGGGTTTTTGGACTCCGACGGGGATGGCTTGCTGGGTTTGGATGATCTTGTTGGGTTGATGGAAGGCGGAGAAGAGGAAGAGAAAATGAAGGGTTTAAGGGAGGCCTTTGAAGTGTATGATGAGGAGGGATGCGGGTTTATAACACCTAAGAGTTTGAAGAGAATGCTTAATAGATTGGGTGAGTCCAAGTCCATTGAGGAATGCAAGGTGATGATCAAACAATTTGATTTGAATGGGGATGGCCTCATCAGCTTTGAAGAGTTCACAGTAATGATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

4.54

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	51 - 73	9.3e-06	EF hand domain
EF-hand_7	PF13499	52 - 111	2.7e-08	EF-hand domain pair
EF-hand_5	PF13202	53 - 73	4.7e-06	EF hand
EF-hand_7	PF13499	122 - 183	1.9e-13	EF-hand domain pair
EF-hand_8	PF13833	138 - 183	6.7e-08	EF-hand domain pair
EF-hand_1	PF00036	158 - 184	7.7e-08	EF hand domain
EF-hand_5	PF13202	163 - 183	6.3e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AciI	CCGC	4 cut(s)	260, 269, 339, 405
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	133, 383, 430, 505, 530
AluBI	AGCT	5 cut(s)	19, 82, 168, 211, 525
AluI	AGCT	5 cut(s)	19, 82, 168, 211, 525
Alw26I	GTCTC	1 cut(s)	180
AoxI	GGCC	2 cut(s)	375, 514
ApeKI	GCWGC	2 cut(s)	16, 247
AspLEI	GCGC	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	192, 464, 493
BauI	CACGAG	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	28, 234
BccI	CCATC	4 cut(s)	176, 290, 325, 506
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	32
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	17, 248
BlsI	GCNGC	2 cut(s)	18, 249
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	3 cut(s)	234, 392, 537
Bpu10I	CCTNAGC	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	204
Bse118I	RCCGGY	2 cut(s)	25, 219
Bse3DI	GCAATG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	4 cut(s)	301, 319, 407, 517
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	252, 410
BseXI	GCAGC	2 cut(s)	28, 234
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	2 cut(s)	377, 516
BsiSI	CCGG	2 cut(s)	26, 220
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsmI	GAATGC	2 cut(s)	441, 479
BsnI	GGCC	2 cut(s)	377, 516
Bsp143I	GATC	3 cut(s)	195, 316, 486
BspACI	CCGC	4 cut(s)	260, 269, 339, 405
BspANI	GGCC	2 cut(s)	377, 516
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	25, 219
BssAI	RCCGGY	2 cut(s)	25, 219
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	195, 316, 486
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	4 cut(s)	339, 345, 425, 525
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	212, 420
BstF5I	GGATG	4 cut(s)	301, 319, 407, 517
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	198, 319, 489
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	195, 316, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 522
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	28, 234
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	377, 516
BtsCI	GGATG	4 cut(s)	301, 319, 407, 517
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	2 cut(s)	25, 219
CviAII	CATG	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	212, 420
DpnI	GATC	3 cut(s)	197, 318, 488
DpnII	GATC	3 cut(s)	195, 316, 486
Eam1104I	CTCTTC	4 cut(s)	339, 345, 425, 525
EarI	CTCTTC	4 cut(s)	339, 345, 425, 525
EciI	GGCGGA	2 cut(s)	275, 354
Eco147I	AGGCCT	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	98
FaiI	YATR	6 cut(s)	74, 76, 78, 96, 390, 413
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	17, 248
FokI	GGATG	4 cut(s)	308, 326, 414, 524
Fsp4HI	GCNGC	2 cut(s)	17, 248
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	17, 248
GsaI	CCCAGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	377, 516
HapII	CCGG	2 cut(s)	26, 220
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	133, 150, 284, 455
HpaII	CCGG	2 cut(s)	26, 220
HphI	GGTGA	3 cut(s)	192, 464, 493
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	3 cut(s)	138, 208, 289
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	329, 355
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	121, 250, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 522
HpyF3I	CTNAG	2 cut(s)	212, 420
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	195, 316, 486
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	39, 233, 290
Lsp1109I	GCAGC	2 cut(s)	28, 234
LweI	GCATC	3 cut(s)	234, 392, 537
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	197, 318, 488
MboI	GATC	3 cut(s)	195, 316, 486
MboII	GAAGA	6 cut(s)	191, 205, 356, 362, 442, 542
MfeI	CAATTG	1 cut(s)	67
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	2 cut(s)	67, 494
MlyI	GAGTC	2 cut(s)	278, 464
MmeI	TCCRAC	2 cut(s)	83, 312
MseI	TTAA	2 cut(s)	368, 441
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	2 cut(s)	26, 220
MunI	CAATTG	1 cut(s)	67
Mva1269I	GAATGC	2 cut(s)	441, 479
MwoI	GCNNNNNNNGC	2 cut(s)	266, 522
NdeII	GATC	3 cut(s)	195, 316, 486
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	377
PctI	GAATGC	2 cut(s)	441, 479
PfeI	GAWTC	2 cut(s)	133, 150
PkrI	GCNGC	2 cut(s)	18, 249
PleI	GAGTC	2 cut(s)	278, 463
PpsI	GAGTC	2 cut(s)	278, 463
Ppu21I	YACGTR	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	368, 441
SatI	GCNGC	2 cut(s)	17, 248
Sau3AI	GATC	3 cut(s)	195, 316, 486
SchI	GAGTC	2 cut(s)	278, 464
SetI	ASST	9 cut(s)	21, 84, 90, 170, 213, 267, 421, 483, 527
SfaNI	GCATC	3 cut(s)	234, 392, 537
SfcI	CTRYAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	67, 494
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	4 cut(s)	260, 269, 339, 405
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	67, 494
TfiI	GAWTC	2 cut(s)	133, 150
Tru1I	TTAA	2 cut(s)	368, 441
Tru9I	TTAA	2 cut(s)	368, 441
TseI	GCWGC	2 cut(s)	16, 247
TspDTI	ATGAA	4 cut(s)	83, 105, 192, 374
TspGWI	ACGGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.