Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

16210793 .. 16211215

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAAAGTGACAAAGGATATGAACGTGTTTTCAGATACTTTGACGAAGATGGTGATGGAAAGATTTCGCCTTCGGAGCTGAGGCGCCGGCTAGGGTTGATGGGAGGAGAGCTGCTGCAGAATGAGGCGGAGGTGGCGGTGGAAATGCTGGACTCGGACGGAGACGGGTTGCTGGGTTTGGAGGATCTTGTGGGGTTAATGGAAGGAGGGAAAGAGGAGGAGAAAGTGAAGGGTTTAAGGGAGGCTTTTGAGGTGTACGATGTGGAGAGGTGTGGGTTTATTACACCCAGCAGCTTGAAGAGAATGCTGAGCAAGCTGGGTGAGTCCAAGTCCATTGATGAGTGCAAGGTGATGATCCAACGGTTTGATTTGAATGGGGATGGTTTGATCAGTTTTGAAGAGTTCAGAATCATGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

141

Amino Acids

15.83

Weight (kDa)

4.48

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	8 - 30	3.3e-06	EF hand domain
EF-hand_6	PF13405	8 - 31	1e-05	EF-hand domain
EF-hand_7	PF13499	9 - 67	1.2e-10	EF-hand domain pair
EF-hand_5	PF13202	10 - 29	6.3e-07	EF hand
EF-hand_7	PF13499	78 - 140	3.3e-14	EF-hand domain pair
EF-hand_8	PF13833	94 - 140	4.6e-08	EF-hand domain pair
EF-hand_1	PF00036	114 - 140	4.7e-08	EF hand domain
EF-hand_5	PF13202	119 - 139	3.1e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	2 cut(s)	128, 137
AclWI	GGATC	2 cut(s)	192, 349
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	298, 373, 398
AluBI	AGCT	4 cut(s)	79, 112, 294, 316
AluI	AGCT	4 cut(s)	79, 112, 294, 316
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	192, 349
ApeKI	GCWGC	3 cut(s)	112, 115, 291
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	65, 332, 361
BanI	GGYRCC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	99, 102, 303
BccI	CCATC	4 cut(s)	44, 50, 94, 374
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	3 cut(s)	113, 116, 292
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	3 cut(s)	114, 117, 293
BmiI	GGNNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	87
BseGI	GGATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	71, 299
BseRI	GAGGAG	3 cut(s)	120, 230, 233
BseXI	GCAGC	3 cut(s)	99, 102, 303
BseYI	CCCAGC	3 cut(s)	172, 287, 316
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	184, 354, 387
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	2 cut(s)	128, 137
BspCNI	CTCAG	2 cut(s)	72, 300
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	2 cut(s)	192, 349
BspT107I	GGYRCC	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssMI	GATC	3 cut(s)	184, 354, 387
BssNI	GRCGYC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	293, 393
BstACI	GRCGYC	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	89, 314
BstDEI	CTNAG	2 cut(s)	80, 308
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	187, 357, 390
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	184, 354, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 134, 313
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	99, 102, 303
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	89, 314
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	6 cut(s)	79, 91, 112, 245, 294, 316
CviKI_1	RGCY	6 cut(s)	79, 91, 112, 245, 294, 316
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	80, 308
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	3 cut(s)	186, 356, 389
DpnII	GATC	3 cut(s)	184, 354, 387
Eam1104I	CTCTTC	2 cut(s)	293, 393
EarI	CTCTTC	2 cut(s)	293, 393
EciI	GGCGGA	1 cut(s)	143
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	21, 413
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FatI	CATG	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	113, 116, 292
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	113, 116, 292
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	3 cut(s)	113, 116, 292
GsaI	CCCAGC	3 cut(s)	176, 291, 320
HaeII	RGCGCY	1 cut(s)	88
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	152, 323, 408
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	65, 332, 361
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	35, 76, 157, 407
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	81, 197, 223
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	118, 345, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 134, 313
HpyF3I	CTNAG	2 cut(s)	80, 308
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	85
KasI	GGCGCC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	184, 354, 387
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	101, 134, 158, 301, 302
Lsp1109I	GCAGC	3 cut(s)	99, 102, 303
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	186, 356, 389
MboI	GATC	3 cut(s)	184, 354, 387
MboII	GAAGA	3 cut(s)	59, 310, 410
MflI	RGATCY	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	146, 332
MmeI	TCCRAC	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	2 cut(s)	197, 236
MspI	CCGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	76, 134, 313
NaeI	GCCGGC	1 cut(s)	89
NarI	GGCGCC	1 cut(s)	85
NdeII	GATC	3 cut(s)	184, 354, 387
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	411
PctI	GAATGC	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	114, 117, 293
PleI	GAGTC	2 cut(s)	146, 331
PluTI	GGCGCC	1 cut(s)	88
PpsI	GAGTC	2 cut(s)	146, 331
PspFI	CCCAGC	3 cut(s)	172, 287, 316
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	197, 236
SatI	GCNGC	3 cut(s)	113, 116, 292
Sau3AI	GATC	3 cut(s)	184, 354, 387
SchI	GAGTC	2 cut(s)	146, 332
SetI	ASST	9 cut(s)	28, 81, 114, 135, 255, 272, 296, 318, 351
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	86
SsiI	CCGC	2 cut(s)	128, 137
SspDI	GGCGCC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	197, 236
Tru9I	TTAA	2 cut(s)	197, 236
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	112, 115, 291
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.