Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

28679898 .. 28681119

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACAGTCGACGCAGTTTCTTTGACTCCAGCAGCTTCTATGGAGAAGGCGCAGCAACAGCATTCTCCTAAGTCGACCTTGGCAAAGTTGTGCCGTAAATTATCTTCGAGAAAGGCAGAGAGGCGCACTCTATCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGGGAATTGTCCGAGGAGGAAGCGCAAGCGGCCGTGGAGGCTTCCGATTTGGATGGGGATGGGATGCTGGGGTTTGAAGAGTTCCAGAAGTTGATGGAGGCTACAAATGGAGACGAGGAGAATAAGAGCAAAGAGCTCAGAGATGCCTTTGGGATGTATGAAATGGAGGGCTCGGGATGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGTAGGTTGGGCGAGTCCCGCACCATTGAGGATTGCAAGACTATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

191

Amino Acids

21.04

Weight (kDa)

4.71

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	54 - 116	2.5e-14	EF-hand domain pair
EF-hand_5	PF13202	56 - 80	6.7e-07	EF hand
EF-hand_8	PF13833	68 - 117	5.9e-10	EF-hand domain pair
EF-hand_7	PF13499	128 - 190	1.8e-10	EF-hand domain pair
EF-hand_8	PF13833	142 - 190	2.8e-10	EF-hand domain pair
EF-hand_1	PF00036	165 - 190	1.2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	9, 74
AciI	CCGC	2 cut(s)	281, 481
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	329, 451
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	5 cut(s)	35, 150, 166, 388, 447
AluI	AGCT	5 cut(s)	35, 150, 166, 388, 447
Alw21I	GWGCWC	2 cut(s)	168, 390
Alw26I	GTCTC	1 cut(s)	357
Ama87I	CYCGRG	2 cut(s)	167, 424
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	32, 52, 147, 156, 159
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	3 cut(s)	52, 126, 277
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	2 cut(s)	167, 424
BanII	GRGCYC	3 cut(s)	168, 390, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
Bbv12I	GWGCWC	2 cut(s)	168, 390
BbvI	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BccI	CCATC	5 cut(s)	299, 305, 340, 527, 562
BceAI	ACGGC	2 cut(s)	78, 269
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
BlsI	GCNGC	6 cut(s)	34, 54, 149, 158, 161, 283
Bme1390I	CCNGG	1 cut(s)	218
BmeT110I	CYCGRG	2 cut(s)	167, 424
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	4 cut(s)	306, 385, 419, 447
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	78, 216, 264, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseDI	CCNNGG	4 cut(s)	78, 216, 264, 285
BseGI	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	281, 383
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BseYI	CCCAGC	2 cut(s)	319, 460
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	168, 390
BsiHKCI	CYCGRG	2 cut(s)	167, 424
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	167, 424
Bsp1286I	GDGCHC	3 cut(s)	168, 390, 425
BspACI	CCGC	2 cut(s)	281, 481
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	564
BssECI	CCNNGG	4 cut(s)	78, 216, 264, 285
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	7, 200, 206, 247
Bst6I	CTCTTC	2 cut(s)	324, 446
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	164, 279, 445
BstDEI	CTNAG	2 cut(s)	69, 389
BstDSI	CCRYGG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
BstHHI	GCGC	3 cut(s)	52, 126, 277
BstMAI	GTCTC	1 cut(s)	357
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 153, 156, 281, 290, 429, 480
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
Cac8I	GCNNGC	3 cut(s)	164, 279, 445
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	3 cut(s)	52, 126, 277
CseI	GACGC	1 cut(s)	20
CviAII	CATG	4 cut(s)	153, 514, 565, 573
CviJI	RGCY	9 cut(s)	35, 150, 166, 284, 293, 353, 388, 423, 447
CviKI_1	RGCY	9 cut(s)	35, 150, 166, 284, 293, 353, 388, 423, 447
DdeI	CTNAG	2 cut(s)	69, 389
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	324, 446
EarI	CTCTTC	2 cut(s)	324, 446
Ecl136II	GAGCTC	2 cut(s)	166, 388
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	3 cut(s)	168, 390, 425
Eco32I	GATATC	1 cut(s)	213
Eco52I	CGGCCG	1 cut(s)	282
Eco53kI	GAGCTC	2 cut(s)	166, 388
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	2 cut(s)	167, 424
EcoICRI	GAGCTC	2 cut(s)	166, 388
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	3 cut(s)	168, 390, 425
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	4 cut(s)	156, 517, 568, 576
FaiI	YATR	8 cut(s)	41, 154, 411, 434, 506, 515, 566, 574
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	4 cut(s)	152, 513, 564, 572
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	2 cut(s)	9, 74
Fnu4HI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
FokI	GGATG	6 cut(s)	317, 323, 328, 418, 441, 469
FriOI	GRGCYC	3 cut(s)	168, 390, 425
Fsp4HI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
GlaI	GCGC	3 cut(s)	51, 125, 276
GluI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
GsaI	CCCAGC	2 cut(s)	323, 464
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	3 cut(s)	52, 126, 277
Hin1II	CATG	4 cut(s)	156, 517, 568, 576
Hin6I	GCGC	3 cut(s)	50, 124, 275
HinP1I	GCGC	3 cut(s)	50, 124, 275
HincII	GTYRAC	2 cut(s)	10, 75
HindII	GTYRAC	2 cut(s)	10, 75
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	5 cut(s)	25, 136, 476, 508, 561
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	10, 75
Hpy188I	TCNGA	6 cut(s)	231, 251, 265, 298, 392, 560
Hpy188III	TCNNGA	5 cut(s)	108, 169, 337, 426, 565
Hpy8I	GTNNAC	2 cut(s)	10, 75
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	40, 166
HpyCH4III	ACNGT	4 cut(s)	7, 200, 206, 247
HpyCH4V	TGCA	3 cut(s)	156, 432, 498
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 153, 156, 281, 290, 429, 480
HpyF3I	CTNAG	2 cut(s)	69, 389
Hsp92II	CATG	4 cut(s)	156, 517, 568, 576
HspAI	GCGC	3 cut(s)	50, 124, 275
LpnPI	CCDG	7 cut(s)	42, 231, 247, 305, 350, 446, 453
Lsp1109I	GCAGC	5 cut(s)	44, 64, 159, 168, 171
LweI	GCATC	4 cut(s)	306, 385, 419, 447
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	3 cut(s)	96, 341, 463
MhlI	GDGCHC	3 cut(s)	168, 390, 425
MluCI	AATT	2 cut(s)	98, 257
MlyI	GAGTC	3 cut(s)	19, 145, 485
MmeI	TCCRAC	2 cut(s)	164, 229
Mph1103I	ATGCAT	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	176
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	7 cut(s)	58, 153, 156, 281, 290, 429, 480
NciI	CCSGG	1 cut(s)	218
NlaIII	CATG	4 cut(s)	156, 517, 568, 576
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	508, 561
PkrI	GCNGC	6 cut(s)	34, 54, 149, 158, 161, 283
PleI	GAGTC	3 cut(s)	19, 144, 484
PpsI	GAGTC	3 cut(s)	19, 144, 484
Psp124BI	GAGCTC	2 cut(s)	168, 390
PspFI	CCCAGC	2 cut(s)	319, 460
SacI	GAGCTC	2 cut(s)	168, 390
SalI	GTCGAC	2 cut(s)	8, 73
SatI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
SchI	GAGTC	3 cut(s)	19, 145, 485
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	3 cut(s)	168, 390, 425
SfaNI	GCATC	4 cut(s)	306, 385, 419, 447
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	98, 257
SsiI	CCGC	2 cut(s)	281, 481
SstI	GAGCTC	2 cut(s)	168, 390
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	4 cut(s)	7, 200, 206, 247
TaqI	TCGA	6 cut(s)	9, 74, 107, 134, 168, 519
TasI	AATT	2 cut(s)	98, 257
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	508, 561
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	5 cut(s)	32, 52, 147, 156, 159
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	9, 74
XmnI	GAANNNNTTC	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.