Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

34956044 .. 34956580

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAAGGCGCAGCAACAGCATTCTCCGAAGTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACCCTATCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGAGACCTCTCCGAGGAGGAAGCTCAAGCGGCCGTGGAGGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGACGAGTTCCAGAAGTTGATGGAGGACACAAATGGAGACCAGGAGAACAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGATGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGTAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

4.8

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	41 - 103	2.1e-14	EF-hand domain pair
EF-hand_5	PF13202	43 - 67	6.1e-07	EF hand
EF-hand_8	PF13833	55 - 105	4.2e-10	EF-hand domain pair
EF-hand_7	PF13499	115 - 177	6.9e-12	EF-hand domain pair
EF-hand_8	PF13833	129 - 177	1.6e-10	EF-hand domain pair
EF-hand_1	PF00036	152 - 177	1.1e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	442
AciI	CCGC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	201, 226
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	6 cut(s)	49, 111, 127, 236, 349, 408
AluI	AGCT	6 cut(s)	49, 111, 127, 236, 349, 408
Alw21I	GWGCWC	2 cut(s)	129, 351
Alw26I	GTCTC	2 cut(s)	210, 318
Ama87I	CYCGRG	2 cut(s)	128, 385
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	13, 108, 117, 120
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	3 cut(s)	13, 87, 444
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	173
AvaI	CYCGRG	2 cut(s)	128, 385
BanII	GRGCYC	3 cut(s)	129, 351, 386
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	129, 351
BbvI	GCAGC	4 cut(s)	25, 120, 129, 132
BccI	CCATC	5 cut(s)	260, 266, 301, 488, 523
BceAI	ACGGC	2 cut(s)	39, 230
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	210, 318
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	14, 109, 118, 121, 243
BlsI	GCNGC	5 cut(s)	15, 110, 119, 122, 244
Bme1390I	CCNGG	2 cut(s)	179, 329
BmeT110I	CYCGRG	2 cut(s)	128, 385
BmrFI	CCNGG	2 cut(s)	179, 329
BmsI	GCATC	4 cut(s)	267, 346, 380, 408
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	4 cut(s)	204, 236, 428, 460
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	179
BsaI	GGTCTC	2 cut(s)	210, 318
BsaJI	CCNNGG	4 cut(s)	39, 177, 225, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 226
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	4 cut(s)	39, 177, 225, 246
BseGI	GGATG	6 cut(s)	271, 277, 282, 372, 395, 423
BseLI	CCNNNNNNNGG	2 cut(s)	201, 226
BseMII	CTCAG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	228, 242
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	25, 120, 129, 132
BseYI	CCCAGC	2 cut(s)	280, 421
Bsh1236I	CGCG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	129, 351
BsiHKCI	CYCGRG	2 cut(s)	128, 385
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	201, 226
BsmAI	GTCTC	2 cut(s)	210, 318
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	245
Bso31I	GGTCTC	2 cut(s)	210, 318
BsoBI	CYCGRG	2 cut(s)	128, 385
Bsp1286I	GDGCHC	3 cut(s)	129, 351, 386
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	525
BspTNI	GGTCTC	2 cut(s)	210, 318
BssECI	CCNNGG	4 cut(s)	39, 177, 225, 246
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	63, 161, 167, 208
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	125, 406
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	246
BstENI	CCTNNNNNAGG	2 cut(s)	199, 224
BstF5I	GGATG	6 cut(s)	271, 277, 282, 372, 395, 423
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	3 cut(s)	13, 87, 444
BstMAI	GTCTC	2 cut(s)	210, 318
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 114, 117, 242, 251, 390, 441
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	177, 327
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	25, 120, 129, 132
BstV2I	GAAGAC	1 cut(s)	57
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	6 cut(s)	271, 277, 282, 372, 395, 423
Cac8I	GCNNGC	2 cut(s)	125, 406
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	3 cut(s)	13, 87, 444
CviAII	CATG	5 cut(s)	114, 466, 475, 526, 534
CviJI	RGCY	9 cut(s)	49, 111, 127, 236, 245, 254, 349, 384, 408
CviKI_1	RGCY	9 cut(s)	49, 111, 127, 236, 245, 254, 349, 384, 408
DdeI	CTNAG	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	2 cut(s)	127, 349
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	3 cut(s)	129, 351, 386
Eco31I	GGTCTC	2 cut(s)	210, 318
Eco32I	GATATC	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	2 cut(s)	127, 349
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	128, 385
EcoICRI	GAGCTC	2 cut(s)	127, 349
EcoNI	CCTNNNNNAGG	2 cut(s)	199, 224
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	129, 351, 386
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	5 cut(s)	117, 469, 478, 529, 537
FaiI	YATR	7 cut(s)	115, 372, 395, 467, 476, 527, 535
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	5 cut(s)	113, 465, 474, 525, 533
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	5 cut(s)	14, 109, 118, 121, 243
FokI	GGATG	6 cut(s)	278, 284, 289, 379, 402, 430
FriOI	GRGCYC	3 cut(s)	129, 351, 386
Fsp4HI	GCNGC	5 cut(s)	14, 109, 118, 121, 243
GlaI	GCGC	3 cut(s)	12, 86, 443
GluI	GCNGC	5 cut(s)	14, 109, 118, 121, 243
GsaI	CCCAGC	2 cut(s)	284, 425
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	3 cut(s)	13, 87, 444
Hin1II	CATG	5 cut(s)	117, 469, 478, 529, 537
Hin6I	GCGC	3 cut(s)	11, 85, 442
HinP1I	GCGC	3 cut(s)	11, 85, 442
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	4 cut(s)	97, 437, 469, 522
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	36, 59
Hpy188I	TCNGA	8 cut(s)	30, 192, 212, 226, 259, 353, 366, 521
Hpy188III	TCNNGA	5 cut(s)	69, 130, 298, 387, 526
Hpy8I	GTNNAC	2 cut(s)	36, 59
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	4 cut(s)	63, 161, 167, 208
HpyCH4V	TGCA	3 cut(s)	117, 393, 459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 114, 117, 242, 251, 390, 441
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	5 cut(s)	117, 469, 478, 529, 537
HspAI	GCGC	3 cut(s)	11, 85, 442
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	8 cut(s)	192, 208, 266, 311, 314, 341, 407, 414
Lsp1109I	GCAGC	4 cut(s)	25, 120, 129, 132
LweI	GCATC	4 cut(s)	267, 346, 380, 408
MaeIII	GTNAC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	57, 424
MhlI	GDGCHC	3 cut(s)	129, 351, 386
MlyI	GAGTC	2 cut(s)	106, 446
MmeI	TCCRAC	2 cut(s)	125, 190
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	137
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	179, 329
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	7 cut(s)	19, 114, 117, 242, 251, 390, 441
NciI	CCSGG	1 cut(s)	179
NlaIII	CATG	5 cut(s)	117, 469, 478, 529, 537
NmuCI	GTSAC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	469, 522
PkrI	GCNGC	5 cut(s)	15, 110, 119, 122, 244
PleI	GAGTC	2 cut(s)	105, 445
PpsI	GAGTC	2 cut(s)	105, 445
Psp124BI	GAGCTC	2 cut(s)	129, 351
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	2 cut(s)	280, 421
PspGI	CCWGG	1 cut(s)	327
SacI	GAGCTC	2 cut(s)	129, 351
SalI	GTCGAC	1 cut(s)	34
SatI	GCNGC	5 cut(s)	14, 109, 118, 121, 243
SchI	GAGTC	2 cut(s)	106, 446
ScrFI	CCNGG	2 cut(s)	179, 329
SduI	GDGCHC	3 cut(s)	129, 351, 386
SfaNI	GCATC	4 cut(s)	267, 346, 380, 408
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	128, 237
SmoI	CTYRAG	2 cut(s)	128, 237
SsiI	CCGC	1 cut(s)	242
SstI	GAGCTC	2 cut(s)	129, 351
StyD4I	CCNGG	2 cut(s)	177, 327
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	63, 161, 167, 208
TaqI	TCGA	5 cut(s)	35, 68, 95, 129, 480
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	469, 522
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	13, 108, 117, 120
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	387
XagI	CCTNNNNNAGG	2 cut(s)	199, 224
XceI	RCATGY	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.