Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

82480947 .. 82482650

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACAAACTAGCACAATACGAGCGTGTTTTCAATCAATTCGATGGCAATGGAGACGGGAAGATATCACCTTTGGAGCTCCAACAATGTGTCGAGGCAATAGGAGGTGAGCTTTCGTCGTCGGAGGCTGAGGCGGCGGTGGAGTACTTGGACTCCGACAGAGACGGGCTGCTGGGTCTCGACGACTTCGTTAAGTTCGTTGAAGGAGGAGATGAGGAAGAGAAGGTGAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGATGGATGTGGGTGCATTACCCCCAAAAGTTTGAAGAAAATGCTCAGTAGACTTGGTGAATCCAGGAGTGTTGATGAGTGCAAGGTCATGATTGCTAGGTTTGATCTCAATGGAGATGGTGTCCTCAATTTTGATGAGTTTAAGCATTGGAAATTCAAGCAGCTCAAACGTGGTGGCATGTACACCAGAAACATGTACGACTATGAGGATGTTTTCGCAAGTGAAAACAAGGTCACTGGAGTTGTGTGGTCTAATAAGAGAGATACAGGACTTTGGTTTGCTCCTCCAGAGTCGAGGGAGTGCAGGCTTGGCATTCAGGTGCTGCCCATTTCGCCTATCACTGAGGCCTTGTTCTCTAATGTTAGCTATGTTAGGGAACTTGTAGATTGGACAATGCCAGCTTTGAGTAGGGAGGGAGTAACTGAAGCATGGAAAGGTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

237

Amino Acids

26.71

Weight (kDa)

4.65

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	7 - 35	5.4e-06	EF-hand domain
EF-hand_7	PF13499	8 - 67	2.1e-11	EF-hand domain pair
EF-hand_5	PF13202	10 - 31	1.8e-07	EF hand
EF-hand_7	PF13499	77 - 138	2.7e-13	EF-hand domain pair
EF-hand_6	PF13405	78 - 107	1e-05	EF-hand domain
EF-hand_8	PF13833	92 - 136	1e-07	EF-hand domain pair
EF-hand_1	PF00036	114 - 138	3.6e-06	EF hand domain
Glyco_hydro81C	PF17652	157 - 235	3.9e-16	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	134, 137
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	4 cut(s)	146, 257, 446, 461
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	34, 203, 298, 421
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	79, 112, 427, 630, 665
AluI	AGCT	5 cut(s)	79, 112, 427, 630, 665
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	3 cut(s)	48, 156, 182
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	169, 424, 586
ApoI	RAATTY	1 cut(s)	416
AsuHPI	GGTGA	4 cut(s)	60, 119, 238, 332
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	156, 436, 573
BccI	CCATC	3 cut(s)	38, 260, 374
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	48, 156, 182
BfaI	CTAG	2 cut(s)	11, 360
BisI	GCNGC	4 cut(s)	135, 170, 425, 587
BlsI	GCNGC	4 cut(s)	136, 171, 426, 588
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	522, 534
Bpu10I	CCTNAGC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bse1I	ACTGG	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	271, 275, 478
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	120, 322, 597
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	2 cut(s)	222, 537
BseXI	GCAGC	3 cut(s)	156, 436, 573
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	48, 156, 182
BsmBI	CGTCTC	2 cut(s)	48, 156
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	134, 137
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	3 cut(s)	121, 321, 598
BspHI	TCATGA	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	505
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	569, 663
BstDEI	CTNAG	3 cut(s)	129, 308, 606
BstF5I	GGATG	3 cut(s)	271, 275, 478
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	3 cut(s)	48, 156, 182
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 573, 595
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	445, 460
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	156, 436, 573
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	271, 275, 478
BtsIMutI	CAGTG	2 cut(s)	498, 603
Cac8I	GCNNGC	2 cut(s)	569, 663
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	145, 256, 445, 460
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	5 cut(s)	262, 352, 442, 457, 693
CviJI	RGCY	9 cut(s)	79, 112, 128, 169, 427, 571, 611, 630, 665
CviKI_1	RGCY	9 cut(s)	79, 112, 128, 169, 427, 571, 611, 630, 665
CviQI	GTAC	4 cut(s)	145, 256, 445, 460
DdeI	CTNAG	3 cut(s)	129, 308, 606
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	708
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	2 cut(s)	48, 156
FaeI	CATG	5 cut(s)	265, 355, 445, 460, 696
FaiI	YATR	8 cut(s)	263, 353, 443, 458, 468, 633, 694, 709
FatI	CATG	5 cut(s)	261, 351, 441, 456, 692
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	135, 170, 425, 587
FokI	GGATG	3 cut(s)	278, 282, 485
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	135, 170, 425, 587
FspBI	CTAG	2 cut(s)	11, 360
GluI	GCNGC	4 cut(s)	135, 170, 425, 587
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	522, 534
HaeIII	GGCC	1 cut(s)	611
Hin1II	CATG	5 cut(s)	265, 355, 445, 460, 696
HinfI	GANTC	3 cut(s)	152, 323, 554
HphI	GGTGA	4 cut(s)	60, 119, 238, 332
Hpy166II	GTNNAC	2 cut(s)	314, 447
Hpy188I	TCNGA	2 cut(s)	124, 157
Hpy188III	TCNNGA	3 cut(s)	179, 352, 551
Hpy8I	GTNNAC	2 cut(s)	314, 447
Hpy99I	CGWCG	3 cut(s)	121, 124, 185
HpyAV	CCTTC	2 cut(s)	197, 217
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	279, 345, 567, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 573, 595
HpyF3I	CTNAG	3 cut(s)	129, 308, 606
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	5 cut(s)	265, 355, 445, 460, 696
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	76, 84, 550
Lsp1109I	GCAGC	3 cut(s)	156, 436, 573
MaeI	CTAG	2 cut(s)	11, 360
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	496, 682
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	73, 230, 310
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	38, 391, 416
MlyI	GAGTC	2 cut(s)	146, 563
MmeI	TCCRAC	3 cut(s)	102, 106, 180
MseI	TTAA	3 cut(s)	192, 249, 405
MslI	CAYNNNNRTG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	134, 573, 595
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	5 cut(s)	265, 355, 445, 460, 696
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	2 cut(s)	445, 460
PagI	TCATGA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	611
PciI	ACATGT	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	136, 171, 426, 588
PleI	GAGTC	2 cut(s)	146, 562
PpsI	GAGTC	2 cut(s)	146, 562
PscI	ACATGT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	586
RsaI	GTAC	4 cut(s)	146, 257, 446, 461
RsaNI	GTAC	4 cut(s)	145, 256, 445, 460
RseI	CAYNNNNRTG	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	192, 249, 405
SatI	GCNGC	4 cut(s)	135, 170, 425, 587
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	2 cut(s)	146, 563
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	3 cut(s)	38, 391, 416
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	2 cut(s)	134, 137
SspMI	CTAG	2 cut(s)	11, 360
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	326
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	4 cut(s)	42, 93, 180, 557
TasI	AATT	3 cut(s)	38, 391, 416
TatI	WGTACW	2 cut(s)	144, 444
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	192, 249, 405
Tru9I	TTAA	3 cut(s)	192, 249, 405
TscAI	CASTG	2 cut(s)	505, 610
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	169, 424, 586
Tsp45I	GTSAC	1 cut(s)	496
TspRI	CASTG	2 cut(s)	505, 610
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	2 cut(s)	445, 460
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	11, 360
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.