Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

34404074 .. 34406625

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCGACTCTTCCTTAATACAATTGAAAGTCTATTTATCCCAATTCGTTGGGCCAAAAATATTATCCTACTTCCAATCGATCATCCAAATAAACAACATGTCTTGAATAAGGTTGGTAGACATGAAACCTTGATCAAGGATGCGAAACCTGAAGGCTTTGGAGGACAAGCTTGGTCTCCTGATGACGAACAATGGAGCTATGAGCGAGGAAAGGAAAATGGAGGCGGCCGATTTCACGGCGACTCCTCTGGCAGCTGCATTGGAGGGAATGCTTGGCAACTTCCAATTTCAGAATTGATGGATCTTTTGAAAATCGACGCAGTTTCTTTGACTCCAGCAGCTTCTATGGAGAAGGCGCAGCAACAGCATTCTCCTAAGTCGACCTTGGCAAAGTTGTGCCGTAAATTATCTTCGAGAAAGGCAGAGAGGCGCACTCTATCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGGGAATTGTCCGAGGAGGAAGCGCAAGCGGCCGTGGAGGCTTCCGATTTGGATGGGGATGGGATGCTGGGGTTTGAAGAGTTCCAGAAGTTGATGGAGGCTACAAATGGAGACGAGGAGAATAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGATGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGTAGGTTGGGCGAGTCCCGCACCATTGAGGATTGTAAGACTATGATTCGCATGTTCGACCTCAATGGAGATGGGGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

294

Amino Acids

32.63

Weight (kDa)

5.11

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	156 - 218	5.6e-14	EF-hand domain pair
EF-hand_5	PF13202	158 - 182	1.2e-06	EF hand
EF-hand_8	PF13833	170 - 219	8.4e-10	EF-hand domain pair
EF-hand_7	PF13499	230 - 292	1.8e-11	EF-hand domain pair
EF-hand_8	PF13833	244 - 292	5.7e-10	EF-hand domain pair
EF-hand_1	PF00036	267 - 292	2.2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	118, 380
AciI	CCGC	3 cut(s)	225, 587, 787
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	2 cut(s)	226, 588
AcuI	CTGAAG	2 cut(s)	171, 518
AfiI	CCNNNNNNNGG	1 cut(s)	546
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	26, 106, 310, 635, 757
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	8 cut(s)	170, 198, 255, 341, 456, 472, 694, 753
AluI	AGCT	8 cut(s)	170, 198, 255, 341, 456, 472, 694, 753
Alw21I	GWGCWC	2 cut(s)	474, 696
Alw26I	GTCTC	2 cut(s)	180, 663
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	2 cut(s)	473, 730
AoxI	GGCC	3 cut(s)	51, 226, 588
ApeKI	GCWGC	7 cut(s)	252, 255, 338, 358, 453, 462, 465
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	358, 432, 583
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	2 cut(s)	473, 730
BanII	GRGCYC	3 cut(s)	474, 696, 731
BarI	GAAGNNNNNNTAC	2 cut(s)	394, 426
Bbv12I	GWGCWC	2 cut(s)	474, 696
BbvI	GCAGC	7 cut(s)	242, 264, 350, 370, 465, 474, 477
BccI	CCATC	6 cut(s)	292, 605, 611, 646, 833, 868
BceAI	ACGGC	3 cut(s)	253, 384, 575
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	2 cut(s)	180, 663
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	9 cut(s)	226, 253, 256, 339, 359, 454, 463, 466, 588
BlsI	GCNGC	9 cut(s)	227, 254, 257, 340, 360, 455, 464, 467, 589
Bme1390I	CCNGG	1 cut(s)	524
BmeT110I	CYCGRG	2 cut(s)	473, 730
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	5 cut(s)	130, 612, 691, 725, 753
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	384, 522, 570, 591
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	4 cut(s)	384, 522, 570, 591
BseGI	GGATG	8 cut(s)	82, 145, 616, 622, 627, 717, 740, 768
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	709
BseRI	GAGGAG	3 cut(s)	235, 587, 689
BseX3I	CGGCCG	2 cut(s)	226, 588
BseXI	GCAGC	7 cut(s)	242, 264, 350, 370, 465, 474, 477
BseYI	CCCAGC	2 cut(s)	625, 766
Bsh1285I	CGRYCG	2 cut(s)	229, 591
BshFI	GGCC	3 cut(s)	53, 228, 590
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	2 cut(s)	229, 591
BsiHKAI	GWGCWC	2 cut(s)	474, 696
BsiHKCI	CYCGRG	2 cut(s)	473, 730
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	180, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	769
BsmI	GAATGC	2 cut(s)	274, 367
BsnI	GGCC	3 cut(s)	53, 228, 590
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	2 cut(s)	473, 730
Bsp1286I	GDGCHC	3 cut(s)	474, 696, 731
Bsp143I	GATC	3 cut(s)	79, 132, 301
BspACI	CCGC	3 cut(s)	225, 587, 787
BspANI	GGCC	3 cut(s)	53, 228, 590
BspCNI	CTCAG	1 cut(s)	708
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	870
BspPI	GGATC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	384, 522, 570, 591
BssMI	GATC	3 cut(s)	79, 132, 301
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	506, 512, 553
Bst6I	CTCTTC	3 cut(s)	14, 630, 752
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	470, 585, 751
BstDEI	CTNAG	2 cut(s)	375, 695
BstDSI	CCRYGG	1 cut(s)	591
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	8 cut(s)	82, 145, 616, 622, 627, 717, 740, 768
BstHHI	GCGC	3 cut(s)	358, 432, 583
BstKTI	GATC	3 cut(s)	82, 135, 304
BstMAI	GTCTC	2 cut(s)	180, 663
BstMBI	GATC	3 cut(s)	79, 132, 301
BstMCI	CGRYCG	2 cut(s)	229, 591
BstMWI	GCNNNNNNNGC	7 cut(s)	364, 459, 462, 587, 596, 735, 786
BstNSI	RCATGY	2 cut(s)	101, 823
BstSCI	CCNGG	1 cut(s)	522
BstV1I	GCAGC	7 cut(s)	242, 264, 350, 370, 465, 474, 477
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	301
BstZI	CGGCCG	2 cut(s)	226, 588
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	53, 228, 590
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	8 cut(s)	82, 145, 616, 622, 627, 717, 740, 768
Cac8I	GCNNGC	3 cut(s)	470, 585, 751
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	3 cut(s)	358, 432, 583
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	326
CviAII	CATG	6 cut(s)	98, 122, 459, 820, 871, 879
DdeI	CTNAG	2 cut(s)	375, 695
DpnI	GATC	3 cut(s)	81, 134, 303
DpnII	GATC	3 cut(s)	79, 132, 301
EaeI	YGGCCR	2 cut(s)	226, 588
EagI	CGGCCG	2 cut(s)	226, 588
Eam1104I	CTCTTC	3 cut(s)	14, 630, 752
EarI	CTCTTC	3 cut(s)	14, 630, 752
Ecl136II	GAGCTC	2 cut(s)	472, 694
EclXI	CGGCCG	2 cut(s)	226, 588
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	3 cut(s)	474, 696, 731
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	519
Eco52I	CGGCCG	2 cut(s)	226, 588
Eco53kI	GAGCTC	2 cut(s)	472, 694
Eco57I	CTGAAG	2 cut(s)	171, 518
Eco88I	CYCGRG	2 cut(s)	473, 730
EcoICRI	GAGCTC	2 cut(s)	472, 694
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	740
EcoT38I	GRGCYC	3 cut(s)	474, 696, 731
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	6 cut(s)	101, 125, 462, 823, 874, 882
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	6 cut(s)	97, 121, 458, 819, 870, 878
FauI	CCCGC	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	2 cut(s)	118, 380
Fnu4HI	GCNGC	9 cut(s)	226, 253, 256, 339, 359, 454, 463, 466, 588
FokI	GGATG	8 cut(s)	69, 152, 623, 629, 634, 724, 747, 775
FriOI	GRGCYC	3 cut(s)	474, 696, 731
Fsp4HI	GCNGC	9 cut(s)	226, 253, 256, 339, 359, 454, 463, 466, 588
GlaI	GCGC	3 cut(s)	357, 431, 582
GluI	GCNGC	9 cut(s)	226, 253, 256, 339, 359, 454, 463, 466, 588
GsaI	CCCAGC	2 cut(s)	629, 770
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	53, 228, 590
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	3 cut(s)	358, 432, 583
Hin1II	CATG	6 cut(s)	101, 125, 462, 823, 874, 882
Hin6I	GCGC	3 cut(s)	356, 430, 581
HinP1I	GCGC	3 cut(s)	356, 430, 581
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	2 cut(s)	168, 751
HinfI	GANTC	7 cut(s)	6, 242, 331, 442, 782, 814, 867
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	119, 381
Hpy188I	TCNGA	8 cut(s)	292, 537, 557, 571, 604, 698, 711, 866
Hpy188III	TCNNGA	7 cut(s)	103, 179, 414, 475, 643, 732, 871
Hpy8I	GTNNAC	2 cut(s)	119, 381
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	146, 346, 472
HpyCH4III	ACNGT	3 cut(s)	506, 512, 553
HpyCH4V	TGCA	3 cut(s)	258, 462, 738
HpyF10VI	GCNNNNNNNGC	7 cut(s)	364, 459, 462, 587, 596, 735, 786
HpyF3I	CTNAG	2 cut(s)	375, 695
Hsp92II	CATG	6 cut(s)	101, 125, 462, 823, 874, 882
HspAI	GCGC	3 cut(s)	356, 430, 581
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	79, 132, 301
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	7 cut(s)	242, 264, 350, 370, 465, 474, 477
LweI	GCATC	5 cut(s)	130, 612, 691, 725, 753
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	81, 134, 303
MboI	GATC	3 cut(s)	79, 132, 301
MboII	GAAGA	3 cut(s)	402, 647, 769
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	474, 696, 731
MluCI	AATT	6 cut(s)	21, 42, 285, 293, 404, 563
MlyI	GAGTC	4 cut(s)	236, 325, 451, 791
MmeI	TCCRAC	2 cut(s)	470, 535
Mph1103I	ATGCAT	1 cut(s)	740
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	524
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	274, 367
MwoI	GCNNNNNNNGC	7 cut(s)	364, 459, 462, 587, 596, 735, 786
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	3 cut(s)	79, 132, 301
NlaIII	CATG	6 cut(s)	101, 125, 462, 823, 874, 882
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	740
NspI	RCATGY	2 cut(s)	101, 823
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	870
PciI	ACATGT	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PctI	GAATGC	2 cut(s)	274, 367
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	814, 867
PkrI	GCNGC	9 cut(s)	227, 254, 257, 340, 360, 455, 464, 467, 589
PleI	GAGTC	4 cut(s)	236, 325, 450, 790
PpsI	GAGTC	4 cut(s)	236, 325, 450, 790
PscI	ACATGT	1 cut(s)	97
Psp124BI	GAGCTC	2 cut(s)	474, 696
PspFI	CCCAGC	2 cut(s)	625, 766
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	255
SacI	GAGCTC	2 cut(s)	474, 696
SalI	GTCGAC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	9 cut(s)	226, 253, 256, 339, 359, 454, 463, 466, 588
Sau3AI	GATC	3 cut(s)	79, 132, 301
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	4 cut(s)	236, 325, 451, 791
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	474, 696, 731
SfaNI	GCATC	5 cut(s)	130, 612, 691, 725, 753
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	21, 42, 285, 293, 404, 563
SsiI	CCGC	3 cut(s)	225, 587, 787
SspI	AATATT	1 cut(s)	61
SstI	GAGCTC	2 cut(s)	474, 696
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	3 cut(s)	506, 512, 553
TaqI	TCGA	7 cut(s)	78, 315, 380, 413, 440, 474, 825
TasI	AATT	6 cut(s)	21, 42, 285, 293, 404, 563
TauI	GCSGC	2 cut(s)	228, 590
TfiI	GAWTC	2 cut(s)	814, 867
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	7 cut(s)	252, 255, 338, 358, 453, 462, 465
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	138, 732
XagI	CCTNNNNNAGG	1 cut(s)	544
XceI	RCATGY	2 cut(s)	101, 823
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	118, 380
XmnI	GAANNNNTTC	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.