Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017751.1

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

8501 .. 9932

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017751.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgcatgacatgtgtccttctaagccaattaagtcttcctcacgcgctcgatcttggtgcggtgccagtcgcgatgttgagccgcgagacgtcgaacccgtttgtggcgctgtgcttcaaaatccgttctcccgggtgacggcatcgacctcaatggaggctttgattgagagggtggggaaggcggtggtggtgactggaaaccgacgatggggagtggagaaggggttgaggaggaggaatgaggttgaggatggtcaagttggagaagagggagaccgagtacatgcaggaagagagacaaaaggccaaaaaagacacgtgttggattgggagtgtgacacgcagaggaagggctgcccagccctggtcagccaaagtgacagaggattcgagcgtgtgttcagctactttgatgaagatggagacgggaagatctcaccctcggagctgagaaaccggctagggttgatgggaggagagatgctgcaaaacgaagcggaggttgcggtggggtttttggactccgacggggatggcttgctgggtttggatgatcttgttgggctgatggaaggtggagaagaggaagagaaaatgaagggtttaagggaggcctttgaagtgtatgatgaggagggatgcgggtttataacaccaaagagcttgaagagaatgcttaatagattgggtgagtccaagtccattgaggaatgcaaggtgatgatcaatcaatttgatttggatggggatggcctcatctgctttgaagagttcacagtaatgatgcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

264

Amino Acids

29.39

Weight (kDa)

4.87

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AatII	GACGTC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	3 cut(s)	45, 72, 85
AciI	CCGC	6 cut(s)	60, 83, 185, 500, 509, 645
AcvI	CACGTG	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	104, 139, 211, 367
AflIII	ACRYGT	3 cut(s)	9, 319, 321
AgsI	TTSAA	4 cut(s)	119, 623, 670, 770
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	3 cut(s)	408, 451, 666
AluI	AGCT	3 cut(s)	408, 451, 666
Alw26I	GTCTC	4 cut(s)	81, 270, 293, 420
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	307, 615, 754
ApeKI	GCWGC	2 cut(s)	357, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	2 cut(s)	47, 110
AsuC2I	CCSGG	2 cut(s)	133, 134
AsuHPI	GGTGA	5 cut(s)	148, 205, 432, 704, 733
AvaI	CYCGRG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	344, 474
BccI	CCATC	8 cut(s)	204, 248, 416, 466, 530, 565, 740, 746
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	133, 134
BcoDI	GTCTC	4 cut(s)	81, 270, 293, 420
BfaI	CTAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	111
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	3 cut(s)	83, 358, 488
BlsI	GCNGC	3 cut(s)	84, 359, 489
Bme1390I	CCNGG	3 cut(s)	133, 134, 368
BmeT110I	CYCGRG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	133, 134, 368
BmsI	GCATC	4 cut(s)	152, 474, 632, 777
BoxI	GACNNNNGTC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	133, 134
BsaAI	YACGTR	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	132, 366, 444
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 139, 211, 367
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	66, 202
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	132, 366, 444
BseGI	GGATG	6 cut(s)	259, 541, 559, 647, 751, 757
BseLI	CCNNNNNNNGG	4 cut(s)	104, 139, 211, 367
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	66, 202
BseRI	GAGGAG	4 cut(s)	247, 250, 492, 650
BseXI	GCAGC	2 cut(s)	344, 474
BseYI	CCCAGC	2 cut(s)	361, 544
Bsh1236I	CGCG	3 cut(s)	45, 72, 85
BshFI	GGCC	3 cut(s)	309, 617, 756
BshNI	GGYRCC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	133, 460
BslI	CCNNNNNNNGG	4 cut(s)	104, 139, 211, 367
BsmAI	GTCTC	4 cut(s)	81, 270, 293, 420
BsmBI	CGTCTC	2 cut(s)	81, 420
BsmI	GAATGC	2 cut(s)	681, 719
BsnI	GGCC	3 cut(s)	309, 617, 756
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	50, 435, 556, 726
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	6 cut(s)	60, 83, 185, 500, 509, 645
BspANI	GGCC	3 cut(s)	309, 617, 756
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	3 cut(s)	45, 72, 85
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	66, 202
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	3 cut(s)	132, 366, 444
BssMI	GATC	4 cut(s)	50, 435, 556, 726
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	6 cut(s)	264, 289, 579, 585, 665, 765
BstACI	GRCGYC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	2 cut(s)	21, 452
BstF5I	GGATG	6 cut(s)	259, 541, 559, 647, 751, 757
BstFNI	CGCG	3 cut(s)	45, 72, 85
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	47, 110
BstKTI	GATC	4 cut(s)	53, 438, 559, 729
BstMAI	GTCTC	4 cut(s)	81, 270, 293, 420
BstMBI	GATC	4 cut(s)	50, 435, 556, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 762
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	13, 290
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	131, 132, 366
BstUI	CGCG	3 cut(s)	45, 72, 85
BstV1I	GCAGC	2 cut(s)	344, 474
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	309, 617, 756
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	6 cut(s)	259, 541, 559, 647, 751, 757
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	542
CfoI	GCGC	2 cut(s)	47, 110
Cfr10I	RCCGGY	1 cut(s)	459
Cfr9I	CCCGGG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	3 cut(s)	5, 10, 287
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	21, 452
DpnI	GATC	4 cut(s)	52, 437, 558, 728
DpnII	GATC	4 cut(s)	50, 435, 556, 726
Eam1104I	CTCTTC	6 cut(s)	264, 289, 579, 585, 665, 765
EarI	CTCTTC	6 cut(s)	264, 289, 579, 585, 665, 765
Eco147I	AGGCCT	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	270
Eco72I	CACGTG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	81, 420
FaeI	CATG	3 cut(s)	8, 13, 290
FaiI	YATR	5 cut(s)	6, 11, 288, 630, 653
FatI	CATG	3 cut(s)	4, 9, 286
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	83, 358, 488
FokI	GGATG	6 cut(s)	266, 548, 566, 654, 758, 764
Fsp4HI	GCNGC	3 cut(s)	83, 358, 488
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	2 cut(s)	46, 109
GluI	GCNGC	3 cut(s)	83, 358, 488
GsaI	CCCAGC	2 cut(s)	365, 548
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	309, 617, 756
HapII	CCGG	2 cut(s)	133, 460
HhaI	GCGC	2 cut(s)	47, 110
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	8, 13, 290
Hin6I	GCGC	2 cut(s)	45, 108
HinP1I	GCGC	2 cut(s)	45, 108
HinfI	GANTC	3 cut(s)	390, 524, 695
HpaII	CCGG	2 cut(s)	133, 460
HphI	GGTGA	5 cut(s)	148, 205, 432, 704, 733
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	2 cut(s)	448, 529
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	777
Hpy99I	CGWCG	3 cut(s)	95, 210, 533
HpyAV	CCTTC	6 cut(s)	27, 175, 217, 346, 569, 595
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	2 cut(s)	90, 321
HpyCH4V	TGCA	4 cut(s)	4, 290, 490, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 762
HpyF3I	CTNAG	2 cut(s)	21, 452
HpySE526I	ACGT	2 cut(s)	90, 321
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	8, 13, 290
HspAI	GCGC	2 cut(s)	45, 108
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	4 cut(s)	50, 435, 556, 726
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	79, 146, 183, 276, 353, 375, 380, 473, 530
Lsp1109I	GCAGC	2 cut(s)	344, 474
LweI	GCATC	4 cut(s)	152, 474, 632, 777
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	90, 321
MaeIII	GTNAC	4 cut(s)	136, 193, 338, 380
MalI	GATC	4 cut(s)	52, 437, 558, 728
MboI	GATC	4 cut(s)	50, 435, 556, 726
MboII	GAAGA	9 cut(s)	27, 281, 306, 431, 445, 596, 602, 682, 782
MflI	RGATCY	1 cut(s)	435
MluCI	AATT	2 cut(s)	27, 734
MlyI	GAGTC	2 cut(s)	518, 704
MmeI	TCCRAC	3 cut(s)	244, 306, 552
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	30, 608, 681
MslI	CAYNNNNRTG	1 cut(s)	782
MspI	CCGG	2 cut(s)	133, 460
MspR9I	CCNGG	3 cut(s)	133, 134, 368
Mva1269I	GAATGC	2 cut(s)	681, 719
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	3 cut(s)	45, 72, 85
MwoI	GCNNNNNNNGC	2 cut(s)	506, 762
NciI	CCSGG	2 cut(s)	133, 134
NdeII	GATC	4 cut(s)	50, 435, 556, 726
NlaIII	CATG	3 cut(s)	8, 13, 290
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	136, 193, 338, 380
NruI	TCGCGA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	13, 290
PceI	AGGCCT	1 cut(s)	617
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	681, 719
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	3 cut(s)	84, 359, 489
PleI	GAGTC	2 cut(s)	518, 703
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
PpsI	GAGTC	2 cut(s)	518, 703
Ppu21I	YACGTR	1 cut(s)	322
PscI	ACATGT	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	366
PspCI	CACGTG	1 cut(s)	322
PspFI	CCCAGC	2 cut(s)	361, 544
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	435
RruI	TCGCGA	1 cut(s)	72
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	30, 608, 681
SatI	GCNGC	3 cut(s)	83, 358, 488
Sau3AI	GATC	4 cut(s)	50, 435, 556, 726
SchI	GAGTC	2 cut(s)	518, 704
ScrFI	CCNGG	3 cut(s)	133, 134, 368
SfaNI	GCATC	4 cut(s)	152, 474, 632, 777
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	782
Sse9I	AATT	2 cut(s)	27, 734
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	6 cut(s)	60, 83, 185, 500, 509, 645
SspMI	CTAG	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	131, 132, 366
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	2 cut(s)	93, 324
TaqI	TCGA	4 cut(s)	49, 93, 146, 393
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	27, 734
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	30, 608, 681
Tru9I	TTAA	3 cut(s)	30, 608, 681
TseFI	GTSAC	4 cut(s)	136, 193, 338, 380
TseI	GCWGC	2 cut(s)	357, 487
Tsp45I	GTSAC	4 cut(s)	136, 193, 338, 380
TspDTI	ATGAA	2 cut(s)	432, 614
TspGWI	ACGGA	1 cut(s)	114
TspMI	CCCGGG	1 cut(s)	132
XceI	RCATGY	2 cut(s)	13, 290
XmaI	CCCGGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	464
ZraI	GACGTC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.