Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

13769041 .. 13769469

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGAGCAACAGAGGATTTGATCGTGTGCTCAGCTACTTTGATGAAGATGGAGATGGAAAGATTTCGCCTTCGGAGCTGAGGCGGGGACTAGGCTTTATGGGTGGAGAGTTATTGCAAAAGGAGGCAGAGGTTGCAGTGGAGTTGCTGGACTCAGATGGAGATGGCTTGCTGGGTTTGGAGGATCTTGTGTGTTTGATGGAAGGTGGGGAAGAAGAGGAGAAAGTGAAGGGATTAAGAGATGCTTTTCAAGTGTATGACGTGGAAGGATGTGGGTTCATTACACCCAAGAGCTTGAAGAGAATGCTTAGCAGCTTAGGTGAATCCAGGTCAATTGATGAGTGTAAAGTGATGATCAATCAGTTTGATTTGAATGGGGATGGTGTGATCAGCTTTGAAGAATTCAGAATAATGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

141

Amino Acids

15.56

Weight (kDa)

4.35

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	401
AgsI	TTSAA	4 cut(s)	251, 298, 373, 398
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	36, 79, 294, 315, 393
AluI	AGCT	5 cut(s)	36, 79, 294, 315, 393
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	6 cut(s)	44, 50, 152, 158, 193, 374
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	2 cut(s)	354, 387
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	313
BlpI	GCTNAGC	2 cut(s)	32, 308
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	232, 405
Bpu10I	CCTNAGC	2 cut(s)	80, 316
Bpu1102I	GCTNAGC	2 cut(s)	32, 308
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	275, 385
BseMII	CTCAG	3 cut(s)	46, 71, 168
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	324
BseYI	CCCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	22, 184, 354, 387
Bsp1720I	GCTNAGC	2 cut(s)	32, 308
BspACI	CCGC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	45, 72, 167
BspPI	GGATC	1 cut(s)	192
BssMI	GATC	4 cut(s)	22, 184, 354, 387
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	210, 293
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	5 cut(s)	32, 80, 154, 308, 316
BstF5I	GGATG	2 cut(s)	275, 385
BstKTI	GATC	4 cut(s)	25, 187, 357, 390
BstMBI	GATC	4 cut(s)	22, 184, 354, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 134
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	275, 385
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	170
CviJI	RGCY	7 cut(s)	36, 79, 96, 168, 294, 315, 393
CviKI_1	RGCY	7 cut(s)	36, 79, 96, 168, 294, 315, 393
DdeI	CTNAG	5 cut(s)	32, 80, 154, 308, 316
DpnI	GATC	4 cut(s)	24, 186, 356, 389
DpnII	GATC	4 cut(s)	22, 184, 354, 387
Eam1104I	CTCTTC	2 cut(s)	210, 293
EarI	CTCTTC	2 cut(s)	210, 293
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	326
FaiI	YATR	2 cut(s)	101, 258
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	102
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	354, 387
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	2 cut(s)	282, 392
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	313
GsaI	CCCAGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	152, 323
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	76, 157, 407
HpyAV	CCTTC	4 cut(s)	81, 197, 223, 260
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	118, 137, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 134
HpyF3I	CTNAG	5 cut(s)	32, 80, 154, 308, 316
HpySE526I	ACGT	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	354, 387
Kzo9I	GATC	4 cut(s)	22, 184, 354, 387
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	134, 158, 313, 340
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	232, 405
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	261
MalI	GATC	4 cut(s)	24, 186, 356, 389
MboI	GATC	4 cut(s)	22, 184, 354, 387
MboII	GAAGA	6 cut(s)	16, 59, 224, 227, 310, 410
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	333, 401
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	8, 75, 118, 124, 175, 211
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	76, 134
NdeII	GATC	4 cut(s)	22, 184, 354, 387
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	22, 184, 354, 387
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	232, 405
Sse9I	AATT	2 cut(s)	333, 401
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	326
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	333, 401
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	17, 60, 268
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.