Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

28765254 .. 28765866

Gene Structure 613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAACAGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCAGAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAGGCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCTCTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAAGCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATGATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCTTTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

4.54

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	22 - 82	3.4e-13	EF-hand domain pair
EF-hand_5	PF13202	23 - 47	1e-07	EF hand
EF-hand_8	PF13833	35 - 79	3.3e-08	EF-hand domain pair
EF-hand_7	PF13499	96 - 159	1.3e-09	EF-hand domain pair
EF-hand_8	PF13833	111 - 158	1.2e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	41, 263
AfaI	GTAC	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	355, 416
AluBI	AGCT	6 cut(s)	127, 302, 351, 373, 419, 450
AluI	AGCT	6 cut(s)	127, 302, 351, 373, 419, 450
Alw26I	GTCTC	2 cut(s)	57, 96
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	41, 263
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	221, 389
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	206, 317, 431
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	57, 96
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	82, 351, 462
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	177, 344
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	177, 344
BseGI	GGATG	2 cut(s)	97, 222
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	65, 137
BseXI	GCAGC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	57, 96
BsmBI	CGTCTC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	2 cut(s)	36, 468
BspMAI	CTGCAG	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	177, 344
BssMI	GATC	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	107, 209
Bst6I	CTCTTC	2 cut(s)	128, 278
BstAFI	CTTAAG	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	46, 67, 270, 446
BstF5I	GGATG	2 cut(s)	97, 222
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	57, 96
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 182, 370
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	97, 222
BtsIMutI	CAGTG	2 cut(s)	267, 390
CciI	TCATGA	2 cut(s)	36, 468
CfoI	GCGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	37, 88, 469
CviJI	RGCY	9 cut(s)	74, 127, 176, 182, 302, 351, 373, 419, 450
CviKI_1	RGCY	9 cut(s)	74, 127, 176, 182, 302, 351, 373, 419, 450
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	4 cut(s)	46, 67, 270, 446
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	128, 278
EarI	CTCTTC	2 cut(s)	128, 278
EcoRI	GAATTC	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	40, 91, 472
FaiI	YATR	5 cut(s)	38, 89, 203, 410, 470
FatI	CATG	3 cut(s)	36, 87, 468
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	104, 229
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	40, 91, 472
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HindIII	AAGCTT	4 cut(s)	300, 371, 417, 448
HinfI	GANTC	3 cut(s)	111, 380, 412
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	221, 389
Hpy188I	TCNGA	2 cut(s)	166, 199
Hpy188III	TCNNGA	3 cut(s)	37, 384, 469
HpyCH4III	ACNGT	2 cut(s)	107, 209
HpyCH4IV	ACGT	2 cut(s)	16, 146
HpyCH4V	TGCA	4 cut(s)	95, 119, 336, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 182, 370
HpyF3I	CTNAG	4 cut(s)	46, 67, 270, 446
HpySE526I	ACGT	2 cut(s)	16, 146
Hsp92II	CATG	3 cut(s)	40, 91, 472
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	124, 348
LpnPI	CCDG	1 cut(s)	357
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	82, 351, 462
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	16, 146
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MluCI	AATT	2 cut(s)	41, 263
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	43, 64, 115, 172, 265, 279, 476
MseI	TTAA	4 cut(s)	129, 141, 189, 228
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	80, 182, 370
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	40, 91, 472
NmeAIII	GCCGAG	1 cut(s)	202
PagI	TCATGA	2 cut(s)	36, 468
PfeI	GAWTC	2 cut(s)	111, 412
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	4 cut(s)	129, 141, 189, 228
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	8 cut(s)	19, 129, 149, 304, 353, 375, 421, 452
SfaNI	GCATC	3 cut(s)	82, 351, 462
SfcI	CTRYAG	1 cut(s)	117
SgeI	CNNG	9 cut(s)	49, 100, 190, 356, 357, 364, 386, 396, 428
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	41, 263
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	107, 209
TaiI	ACGT	2 cut(s)	19, 149
TasI	AATT	2 cut(s)	41, 263
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	111, 412
Tru1I	TTAA	4 cut(s)	129, 141, 189, 228
Tru9I	TTAA	4 cut(s)	129, 141, 189, 228
TscAI	CASTG	2 cut(s)	274, 397
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	7 cut(s)	17, 18, 25, 53, 183, 276, 383
TspRI	CASTG	2 cut(s)	274, 397
Vha464I	CTTAAG	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	41, 263
XbaI	TCTAGA	1 cut(s)	383
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.