Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

33530820 .. 33531365

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGAAGGCGCAGCAACAGCAGCAGCAGCATTCTCCTAAGTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACTCTATCGAGTCCAACGAGCAGCTCGTGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGAGACCTCTCCGAGGAGGAAGCGCAAGCGGCCGTGGACGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGAAGAGTTCCAGAAGTTGATGGAGGCCACAAATGGAGACCAGGAGAACAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGATGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGCAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

181

Amino Acids

20.21

Weight (kDa)

4.86

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	44 - 106	3.1e-14	EF-hand domain pair
EF-hand_5	PF13202	46 - 70	6.2e-07	EF hand
EF-hand_8	PF13833	58 - 107	4.2e-10	EF-hand domain pair
EF-hand_7	PF13499	118 - 180	7.1e-12	EF-hand domain pair
EF-hand_8	PF13833	132 - 180	1.7e-10	EF-hand domain pair
EF-hand_1	PF00036	155 - 180	1.1e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	451
AciI	CCGC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	210, 235
AgsI	TTSAA	2 cut(s)	299, 421
AjnI	CCWGG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	5 cut(s)	58, 120, 136, 358, 417
AluI	AGCT	5 cut(s)	58, 120, 136, 358, 417
Alw21I	GWGCWC	2 cut(s)	138, 360
Alw26I	GTCTC	2 cut(s)	219, 327
Ama87I	CYCGRG	2 cut(s)	137, 394
AoxI	GGCC	2 cut(s)	252, 321
ApeKI	GCWGC	7 cut(s)	13, 22, 25, 28, 117, 126, 129
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	4 cut(s)	13, 96, 247, 453
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	137, 394
BanII	GRGCYC	3 cut(s)	138, 360, 395
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BauI	CACGAG	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	138, 360
BbvI	GCAGC	7 cut(s)	25, 34, 37, 40, 129, 138, 141
BccI	CCATC	5 cut(s)	269, 275, 310, 497, 532
BceAI	ACGGC	2 cut(s)	48, 239
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	219, 327
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	8 cut(s)	14, 23, 26, 29, 118, 127, 130, 252
BlsI	GCNGC	8 cut(s)	15, 24, 27, 30, 119, 128, 131, 253
Bme1390I	CCNGG	2 cut(s)	188, 338
BmeT110I	CYCGRG	2 cut(s)	137, 394
BmrFI	CCNGG	2 cut(s)	188, 338
BmsI	GCATC	4 cut(s)	276, 355, 389, 417
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	4 cut(s)	213, 245, 437, 469
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	2 cut(s)	219, 327
BsaJI	CCNNGG	4 cut(s)	48, 186, 234, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 235
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	4 cut(s)	48, 186, 234, 255
BseGI	GGATG	6 cut(s)	280, 286, 291, 381, 404, 432
BseLI	CCNNNNNNNGG	2 cut(s)	210, 235
BseMII	CTCAG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	237, 251
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	7 cut(s)	25, 34, 37, 40, 129, 138, 141
BseYI	CCCAGC	2 cut(s)	289, 430
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	254, 323
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	138, 360
BsiHKCI	CYCGRG	2 cut(s)	137, 394
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	210, 235
BsmAI	GTCTC	2 cut(s)	219, 327
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	254, 323
Bso31I	GGTCTC	2 cut(s)	219, 327
BsoBI	CYCGRG	2 cut(s)	137, 394
Bsp1286I	GDGCHC	3 cut(s)	138, 360, 395
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	254, 323
BspCNI	CTCAG	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	426
BspTNI	GGTCTC	2 cut(s)	219, 327
BssECI	CCNNGG	4 cut(s)	48, 186, 234, 255
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	4 cut(s)	72, 170, 176, 217
Bst6I	CTCTTC	2 cut(s)	294, 416
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	134, 249, 415
BstDEI	CTNAG	2 cut(s)	39, 359
BstDSI	CCRYGG	1 cut(s)	255
BstENI	CCTNNNNNAGG	2 cut(s)	208, 233
BstF5I	GGATG	6 cut(s)	280, 286, 291, 381, 404, 432
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	4 cut(s)	13, 96, 247, 453
BstMAI	GTCTC	2 cut(s)	219, 327
BstMCI	CGRYCG	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	186, 336
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	7 cut(s)	25, 34, 37, 40, 129, 138, 141
BstV2I	GAAGAC	1 cut(s)	66
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	254, 323
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	6 cut(s)	280, 286, 291, 381, 404, 432
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	134, 249, 415
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	4 cut(s)	13, 96, 247, 453
CseI	GACGC	1 cut(s)	269
CviAII	CATG	4 cut(s)	475, 484, 535, 543
CviJI	RGCY	8 cut(s)	58, 120, 136, 254, 323, 358, 393, 417
CviKI_1	RGCY	8 cut(s)	58, 120, 136, 254, 323, 358, 393, 417
DdeI	CTNAG	2 cut(s)	39, 359
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	294, 416
EarI	CTCTTC	2 cut(s)	294, 416
Ecl136II	GAGCTC	2 cut(s)	136, 358
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	3 cut(s)	138, 360, 395
Eco31I	GGTCTC	2 cut(s)	219, 327
Eco32I	GATATC	1 cut(s)	183
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	2 cut(s)	136, 358
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	2 cut(s)	137, 394
EcoICRI	GAGCTC	2 cut(s)	136, 358
EcoNI	CCTNNNNNAGG	2 cut(s)	208, 233
EcoRII	CCWGG	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	404
EcoT38I	GRGCYC	3 cut(s)	138, 360, 395
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	478, 487, 538, 546
FaiI	YATR	6 cut(s)	381, 404, 476, 485, 536, 544
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	4 cut(s)	474, 483, 534, 542
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	8 cut(s)	14, 23, 26, 29, 118, 127, 130, 252
FokI	GGATG	6 cut(s)	287, 293, 298, 388, 411, 439
FriOI	GRGCYC	3 cut(s)	138, 360, 395
Fsp4HI	GCNGC	8 cut(s)	14, 23, 26, 29, 118, 127, 130, 252
GlaI	GCGC	4 cut(s)	12, 95, 246, 452
GluI	GCNGC	8 cut(s)	14, 23, 26, 29, 118, 127, 130, 252
GsaI	CCCAGC	2 cut(s)	293, 434
HaeIII	GGCC	2 cut(s)	254, 323
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	4 cut(s)	13, 96, 247, 453
Hin1II	CATG	4 cut(s)	478, 487, 538, 546
Hin6I	GCGC	4 cut(s)	11, 94, 245, 451
HinP1I	GCGC	4 cut(s)	11, 94, 245, 451
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	4 cut(s)	106, 446, 478, 531
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	45, 68, 259
Hpy188I	TCNGA	7 cut(s)	201, 221, 235, 268, 362, 375, 530
Hpy188III	TCNNGA	5 cut(s)	78, 139, 307, 396, 535
Hpy8I	GTNNAC	3 cut(s)	45, 68, 259
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	4 cut(s)	72, 170, 176, 217
HpyCH4V	TGCA	3 cut(s)	126, 402, 468
HpyF3I	CTNAG	2 cut(s)	39, 359
Hsp92II	CATG	4 cut(s)	478, 487, 538, 546
HspAI	GCGC	4 cut(s)	11, 94, 245, 451
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	9 cut(s)	201, 217, 275, 320, 323, 350, 416, 421, 423
Lsp1109I	GCAGC	7 cut(s)	25, 34, 37, 40, 129, 138, 141
LweI	GCATC	4 cut(s)	276, 355, 389, 417
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	3 cut(s)	66, 311, 433
MhlI	GDGCHC	3 cut(s)	138, 360, 395
MlyI	GAGTC	2 cut(s)	115, 455
MmeI	TCCRAC	2 cut(s)	134, 199
Mph1103I	ATGCAT	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	146
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	188, 338
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	451
NciI	CCSGG	1 cut(s)	188
NlaIII	CATG	4 cut(s)	478, 487, 538, 546
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 119
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	478, 531
PkrI	GCNGC	8 cut(s)	15, 24, 27, 30, 119, 128, 131, 253
PleI	GAGTC	2 cut(s)	114, 454
PpsI	GAGTC	2 cut(s)	114, 454
Psp124BI	GAGCTC	2 cut(s)	138, 360
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	2 cut(s)	289, 430
PspGI	CCWGG	1 cut(s)	336
SacI	GAGCTC	2 cut(s)	138, 360
SalI	GTCGAC	1 cut(s)	43
SatI	GCNGC	8 cut(s)	14, 23, 26, 29, 118, 127, 130, 252
SchI	GAGTC	2 cut(s)	115, 455
ScrFI	CCNGG	2 cut(s)	188, 338
SduI	GDGCHC	3 cut(s)	138, 360, 395
SfaNI	GCATC	4 cut(s)	276, 355, 389, 417
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	1 cut(s)	251
SstI	GAGCTC	2 cut(s)	138, 360
StyD4I	CCNGG	2 cut(s)	186, 336
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	72, 170, 176, 217
TaqI	TCGA	5 cut(s)	44, 77, 104, 138, 489
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	478, 531
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	7 cut(s)	13, 22, 25, 28, 117, 126, 129
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	396
XagI	CCTNNNNNAGG	2 cut(s)	208, 233
XceI	RCATGY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.