Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

36425351 .. 36426080

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACAGTCGACGTAGTTTCTTTGAGTCCAGCAGCTTCTATGGAGAAGGCGCAGCAACAGCAGCAGCAGCATTCTCCTAAGTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACTCTTTCGAGTCCAACGAGCAGCTCGTGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGAGACCTCTCCGAGGAGGAAGCGCAAGCGGCCGTGGACGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGAAGAGTTCCAGAAGTTGATGGAGGCCACAAATGGAGACCAGGAGAACAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGATGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGCAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

194

Amino Acids

21.47

Weight (kDa)

4.8

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	57 - 119	3.6e-14	EF-hand domain pair
EF-hand_5	PF13202	59 - 83	6.9e-07	EF hand
EF-hand_8	PF13833	71 - 120	4.8e-10	EF-hand domain pair
EF-hand_7	PF13499	131 - 193	8.2e-12	EF-hand domain pair
EF-hand_8	PF13833	145 - 193	1.9e-10	EF-hand domain pair
EF-hand_1	PF00036	168 - 193	1.3e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccI	GTMKAC	2 cut(s)	9, 83
AccII	CGCG	1 cut(s)	490
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	249, 274
AgsI	TTSAA	2 cut(s)	338, 460
AjnI	CCWGG	1 cut(s)	375
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	6 cut(s)	35, 97, 159, 175, 397, 456
AluI	AGCT	6 cut(s)	35, 97, 159, 175, 397, 456
Alw21I	GWGCWC	2 cut(s)	177, 399
Alw26I	GTCTC	2 cut(s)	258, 366
Ama87I	CYCGRG	2 cut(s)	176, 433
AoxI	GGCC	2 cut(s)	291, 360
ApeKI	GCWGC	8 cut(s)	32, 52, 61, 64, 67, 156, 165, 168
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	4 cut(s)	52, 135, 286, 492
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	176, 433
BanII	GRGCYC	3 cut(s)	177, 399, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
BauI	CACGAG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	177, 399
BbvI	GCAGC	8 cut(s)	44, 64, 73, 76, 79, 168, 177, 180
BccI	CCATC	5 cut(s)	308, 314, 349, 536, 571
BceAI	ACGGC	2 cut(s)	87, 278
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	258, 366
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	9 cut(s)	33, 53, 62, 65, 68, 157, 166, 169, 291
BlsI	GCNGC	9 cut(s)	34, 54, 63, 66, 69, 158, 167, 170, 292
Bme1390I	CCNGG	2 cut(s)	227, 377
BmeT110I	CYCGRG	2 cut(s)	176, 433
BmrFI	CCNGG	2 cut(s)	227, 377
BmsI	GCATC	4 cut(s)	315, 394, 428, 456
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	4 cut(s)	252, 284, 476, 508
BpuMI	CCSGG	1 cut(s)	227
BsaI	GGTCTC	2 cut(s)	258, 366
BsaJI	CCNNGG	4 cut(s)	87, 225, 273, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 274
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	4 cut(s)	87, 225, 273, 294
BseGI	GGATG	6 cut(s)	319, 325, 330, 420, 443, 471
BseLI	CCNNNNNNNGG	2 cut(s)	249, 274
BseMII	CTCAG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	276, 290
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	8 cut(s)	44, 64, 73, 76, 79, 168, 177, 180
BseYI	CCCAGC	2 cut(s)	328, 469
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	293, 362
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	177, 399
BsiHKCI	CYCGRG	2 cut(s)	176, 433
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	249, 274
BsmAI	GTCTC	2 cut(s)	258, 366
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	293, 362
Bso31I	GGTCTC	2 cut(s)	258, 366
BsoBI	CYCGRG	2 cut(s)	176, 433
Bsp1286I	GDGCHC	3 cut(s)	177, 399, 434
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	293, 362
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	465
BspTNI	GGTCTC	2 cut(s)	258, 366
BssECI	CCNNGG	4 cut(s)	87, 225, 273, 294
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	5 cut(s)	7, 111, 209, 215, 256
Bst6I	CTCTTC	2 cut(s)	333, 455
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	173, 288, 454
BstDEI	CTNAG	2 cut(s)	78, 398
BstDSI	CCRYGG	1 cut(s)	294
BstENI	CCTNNNNNAGG	2 cut(s)	247, 272
BstF5I	GGATG	6 cut(s)	319, 325, 330, 420, 443, 471
BstFNI	CGCG	1 cut(s)	490
BstHHI	GCGC	4 cut(s)	52, 135, 286, 492
BstMAI	GTCTC	2 cut(s)	258, 366
BstMCI	CGRYCG	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	225, 375
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	8 cut(s)	44, 64, 73, 76, 79, 168, 177, 180
BstV2I	GAAGAC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	293, 362
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	6 cut(s)	319, 325, 330, 420, 443, 471
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	173, 288, 454
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	4 cut(s)	52, 135, 286, 492
CseI	GACGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	514, 523, 574
DdeI	CTNAG	2 cut(s)	78, 398
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	333, 455
EarI	CTCTTC	2 cut(s)	333, 455
Ecl136II	GAGCTC	2 cut(s)	175, 397
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	3 cut(s)	177, 399, 434
Eco31I	GGTCTC	2 cut(s)	258, 366
Eco32I	GATATC	1 cut(s)	222
Eco52I	CGGCCG	1 cut(s)	291
Eco53kI	GAGCTC	2 cut(s)	175, 397
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	2 cut(s)	176, 433
EcoICRI	GAGCTC	2 cut(s)	175, 397
EcoNI	CCTNNNNNAGG	2 cut(s)	247, 272
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	3 cut(s)	177, 399, 434
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	517, 526, 577
FaiI	YATR	6 cut(s)	41, 420, 443, 515, 524, 575
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	3 cut(s)	513, 522, 573
FblI	GTMKAC	2 cut(s)	9, 83
Fnu4HI	GCNGC	9 cut(s)	33, 53, 62, 65, 68, 157, 166, 169, 291
FokI	GGATG	6 cut(s)	326, 332, 337, 427, 450, 478
FriOI	GRGCYC	3 cut(s)	177, 399, 434
Fsp4HI	GCNGC	9 cut(s)	33, 53, 62, 65, 68, 157, 166, 169, 291
GlaI	GCGC	4 cut(s)	51, 134, 285, 491
GluI	GCNGC	9 cut(s)	33, 53, 62, 65, 68, 157, 166, 169, 291
GsaI	CCCAGC	2 cut(s)	332, 473
HaeIII	GGCC	2 cut(s)	293, 362
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	4 cut(s)	52, 135, 286, 492
Hin1II	CATG	3 cut(s)	517, 526, 577
Hin6I	GCGC	4 cut(s)	50, 133, 284, 490
HinP1I	GCGC	4 cut(s)	50, 133, 284, 490
HincII	GTYRAC	2 cut(s)	10, 84
HindII	GTYRAC	2 cut(s)	10, 84
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	5 cut(s)	25, 145, 485, 517, 570
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	4 cut(s)	10, 84, 107, 298
Hpy188I	TCNGA	7 cut(s)	240, 260, 274, 307, 401, 414, 569
Hpy188III	TCNNGA	5 cut(s)	117, 178, 346, 435, 574
Hpy8I	GTNNAC	4 cut(s)	10, 84, 107, 298
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	40, 175
HpyCH4III	ACNGT	5 cut(s)	7, 111, 209, 215, 256
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	165, 441, 507
HpyF3I	CTNAG	2 cut(s)	78, 398
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	517, 526, 577
HspAI	GCGC	4 cut(s)	50, 133, 284, 490
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	8 cut(s)	44, 64, 73, 76, 79, 168, 177, 180
LweI	GCATC	4 cut(s)	315, 394, 428, 456
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	105, 350, 472
MhlI	GDGCHC	3 cut(s)	177, 399, 434
MlyI	GAGTC	3 cut(s)	34, 154, 494
MmeI	TCCRAC	2 cut(s)	173, 238
Mph1103I	ATGCAT	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	185
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	227, 377
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	490
NciI	CCSGG	1 cut(s)	227
NlaIII	CATG	3 cut(s)	517, 526, 577
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 158
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	517, 570
PkrI	GCNGC	9 cut(s)	34, 54, 63, 66, 69, 158, 167, 170, 292
PleI	GAGTC	3 cut(s)	33, 153, 493
PpsI	GAGTC	3 cut(s)	33, 153, 493
Psp124BI	GAGCTC	2 cut(s)	177, 399
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	2 cut(s)	328, 469
PspGI	CCWGG	1 cut(s)	375
SacI	GAGCTC	2 cut(s)	177, 399
SalI	GTCGAC	2 cut(s)	8, 82
SatI	GCNGC	9 cut(s)	33, 53, 62, 65, 68, 157, 166, 169, 291
SchI	GAGTC	3 cut(s)	34, 154, 494
ScrFI	CCNGG	2 cut(s)	227, 377
SduI	GDGCHC	3 cut(s)	177, 399, 434
SfaNI	GCATC	4 cut(s)	315, 394, 428, 456
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	290
SstI	GAGCTC	2 cut(s)	177, 399
StyD4I	CCNGG	2 cut(s)	225, 375
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	5 cut(s)	7, 111, 209, 215, 256
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	9, 83, 116, 143, 177, 528
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	517, 570
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	8 cut(s)	32, 52, 61, 64, 67, 156, 165, 168
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	435
XagI	CCTNNNNNAGG	2 cut(s)	247, 272
XceI	RCATGY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	9, 83
XmnI	GAANNNNTTC	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.