Rorug02G0581300

calcium-binding protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
70519119 .. 70519496
378 bp
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UTR
Exon/CDS
Intron
Rorug02G0581300.1

Sequence Viewer

Length: 234 bp
ATGGATGCACCAAAAGTTCCAACCTTAAAGGGTAATAGCGGATTGAGGGATCAGATCATCAAGTCTAGGAGGGGTTGGAAGAAGTTGAAGACCATGGAGGGCAACCAAGGTGCAAATGGAAGGGCTTCTAGTTCACAAGCAATGCATGAACCTCCAACTCAGAGTAGCCAAAACCCTGCAGCAAAAAAGGCACAACAGAAGGGCCAAACTGAATCTGAATGGGCAGGATTTTGA

Protein Analysis

77

Amino Acids

8.35

Weight (kDa)

10.28

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 88
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 191
BfaI CTAG 2 cut(s) 66, 129
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 93, 106
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 93, 106
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 204
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 49, 54
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 93, 106
BssMI GATC 2 cut(s) 49, 54
BssT1I CCWWGG 2 cut(s) 93, 106
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 52, 57
BstMBI GATC 2 cut(s) 49, 54
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 2 cut(s) 94, 146
CviJI RGCY 3 cut(s) 125, 168, 204
CviKI_1 RGCY 3 cut(s) 125, 168, 204
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 51, 56
DpnII GATC 2 cut(s) 49, 54
Eco130I CCWWGG 2 cut(s) 93, 106
EcoT14I CCWWGG 2 cut(s) 93, 106
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 93, 106
FaeI CATG 2 cut(s) 97, 149
FaiI YATR 2 cut(s) 95, 147
FatI CATG 2 cut(s) 93, 145
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 66, 129
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 97, 149
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 54, 162, 217
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 114, 193
HpyCH4V TGCA 4 cut(s) 8, 113, 145, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 97, 149
Kzo9I GATC 2 cut(s) 49, 54
LpnPI CCDG 2 cut(s) 189, 210
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 2 cut(s) 66, 129
MalI GATC 2 cut(s) 51, 56
MboI GATC 2 cut(s) 49, 54
MboII GAAGA 2 cut(s) 91, 100
MmeI TCCRAC 3 cut(s) 44, 56, 179
MnlI CCTC 4 cut(s) 39, 63, 91, 162
Mph1103I ATGCAT 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 49, 54
NlaIII CATG 2 cut(s) 97, 149
NsiI ATGCAT 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 181
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 49, 54
Sau96I GGNCC 1 cut(s) 202
SetI ASST 3 cut(s) 26, 112, 154
SfcI CTRYAG 1 cut(s) 177
SgeI CNNG 8 cut(s) 73, 78, 106, 119, 141, 149, 158, 188
SsiI CCGC 1 cut(s) 39
SspMI CTAG 2 cut(s) 66, 129
StyI CCWWGG 2 cut(s) 93, 106
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 2 cut(s) 66, 129
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.