Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

35610928 .. 35611847

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACGGTCGACGTAGTTTCTTTGACTCCAGCAGCTTCCATGGAGAAGGCGCAGCAACAGCATTCTCCCAAGTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACTCTATCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGATGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGAGAGCTCTCCGAGGAGGAAGCGCAAGCGGCCGTGGACGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGAAGAGTTCCAGAAGTTGATGCAGGCCACAAATGGAGACGAGGAGAACAAGAGCAAAGAGCTCAGAGATGCCTTTCGGATGTATGAAATGGAGGGCTCAGGATGCATAACACCCGCAAGCTTGAAGAGGATGCTGGGCAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTTGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

191

Amino Acids

21.06

Weight (kDa)

4.74

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	54 - 117	2.3e-14	EF-hand domain pair
EF-hand_5	PF13202	56 - 80	6.7e-07	EF hand
EF-hand_8	PF13833	68 - 117	3.5e-10	EF-hand domain pair
EF-hand_7	PF13499	128 - 190	2.3e-10	EF-hand domain pair
EF-hand_8	PF13833	142 - 190	8.2e-09	EF-hand domain pair
EF-hand_1	PF00036	165 - 190	8.9e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	456
AccI	GTMKAC	2 cut(s)	9, 74
AccII	CGCG	1 cut(s)	481
AciI	CCGC	2 cut(s)	281, 441
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	329, 451
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	7 cut(s)	35, 88, 150, 166, 259, 388, 447
AluI	AGCT	7 cut(s)	35, 88, 150, 166, 259, 388, 447
Alw21I	GWGCWC	3 cut(s)	168, 261, 390
Alw26I	GTCTC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	282, 351
ApeKI	GCWGC	5 cut(s)	32, 52, 147, 156, 159
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	4 cut(s)	52, 126, 277, 483
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	167
BanII	GRGCYC	4 cut(s)	168, 261, 390, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	168, 261, 390
BbvI	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BccI	CCATC	4 cut(s)	299, 305, 527, 562
BceAI	ACGGC	2 cut(s)	78, 269
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
BlsI	GCNGC	6 cut(s)	34, 54, 149, 158, 161, 283
Bme1390I	CCNGG	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	5 cut(s)	306, 336, 385, 419, 447
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 467, 499
BpmI	CTGGAG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	39, 78, 216, 264, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseDI	CCNNGG	5 cut(s)	39, 78, 216, 264, 285
BseGI	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	403, 438
BseRI	GAGGAG	3 cut(s)	267, 281, 383
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BseYI	CCCAGC	2 cut(s)	319, 460
Bsh1236I	CGCG	1 cut(s)	481
Bsh1285I	CGRYCG	2 cut(s)	9, 285
BshFI	GGCC	2 cut(s)	284, 353
BsiEI	CGRYCG	2 cut(s)	9, 285
BsiHKAI	GWGCWC	3 cut(s)	168, 261, 390
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	284, 353
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	4 cut(s)	168, 261, 390, 425
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	281, 441
BspANI	GGCC	2 cut(s)	284, 353
BspCNI	CTCAG	2 cut(s)	402, 437
BspFNI	CGCG	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	456
BssECI	CCNNGG	5 cut(s)	39, 78, 216, 264, 285
BssT1I	CCWWGG	2 cut(s)	39, 78
Bst4CI	ACNGT	5 cut(s)	7, 102, 200, 206, 247
Bst6I	CTCTTC	2 cut(s)	324, 446
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	164, 279, 351, 445
BstDEI	CTNAG	2 cut(s)	389, 424
BstDSI	CCRYGG	2 cut(s)	39, 285
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	4 cut(s)	52, 126, 277, 483
BstMAI	GTCTC	1 cut(s)	357
BstMCI	CGRYCG	2 cut(s)	9, 285
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 153, 156, 281, 290, 429, 471, 480
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	5 cut(s)	44, 64, 159, 168, 171
BstV2I	GAAGAC	1 cut(s)	96
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	284, 353
BtgI	CCRYGG	2 cut(s)	39, 285
BtsCI	GGATG	6 cut(s)	310, 316, 321, 411, 434, 462
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	4 cut(s)	164, 279, 351, 445
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	4 cut(s)	52, 126, 277, 483
CseI	GACGC	1 cut(s)	299
CviAII	CATG	6 cut(s)	40, 153, 505, 514, 565, 573
DdeI	CTNAG	2 cut(s)	389, 424
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	324, 446
EarI	CTCTTC	2 cut(s)	324, 446
Ecl136II	GAGCTC	3 cut(s)	166, 259, 388
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	39, 78
Eco24I	GRGCYC	4 cut(s)	168, 261, 390, 425
Eco32I	GATATC	1 cut(s)	213
Eco52I	CGGCCG	1 cut(s)	282
Eco53kI	GAGCTC	3 cut(s)	166, 259, 388
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	3 cut(s)	166, 259, 388
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	39, 78
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	4 cut(s)	168, 261, 390, 425
ErhI	CCWWGG	2 cut(s)	39, 78
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	6 cut(s)	43, 156, 508, 517, 568, 576
FaiI	YATR	8 cut(s)	41, 154, 411, 434, 506, 515, 566, 574
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	6 cut(s)	39, 152, 504, 513, 564, 572
FauI	CCCGC	1 cut(s)	448
FblI	GTMKAC	2 cut(s)	9, 74
Fnu4HI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
FokI	GGATG	6 cut(s)	317, 323, 328, 418, 441, 469
FriOI	GRGCYC	4 cut(s)	168, 261, 390, 425
Fsp4HI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
GlaI	GCGC	4 cut(s)	51, 125, 276, 482
GluI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
GsaI	CCCAGC	2 cut(s)	323, 464
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	284, 353
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	4 cut(s)	52, 126, 277, 483
Hin1II	CATG	6 cut(s)	43, 156, 508, 517, 568, 576
Hin6I	GCGC	4 cut(s)	50, 124, 275, 481
HinP1I	GCGC	4 cut(s)	50, 124, 275, 481
HincII	GTYRAC	2 cut(s)	10, 75
HindII	GTYRAC	2 cut(s)	10, 75
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	4 cut(s)	25, 136, 476, 561
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	4 cut(s)	10, 75, 98, 289
Hpy188I	TCNGA	7 cut(s)	231, 251, 265, 298, 392, 405, 560
Hpy188III	TCNNGA	5 cut(s)	108, 169, 337, 426, 565
Hpy8I	GTNNAC	4 cut(s)	10, 75, 98, 289
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	40, 166
HpyCH4III	ACNGT	5 cut(s)	7, 102, 200, 206, 247
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	5 cut(s)	156, 349, 432, 498, 513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 153, 156, 281, 290, 429, 471, 480
HpyF3I	CTNAG	2 cut(s)	389, 424
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	6 cut(s)	43, 156, 508, 517, 568, 576
HspAI	GCGC	4 cut(s)	50, 124, 275, 481
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	9 cut(s)	42, 231, 247, 305, 335, 350, 411, 446, 451
Lsp1109I	GCAGC	5 cut(s)	44, 64, 159, 168, 171
LweI	GCATC	5 cut(s)	306, 336, 385, 419, 447
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	3 cut(s)	96, 341, 463
MhlI	GDGCHC	4 cut(s)	168, 261, 390, 425
MlyI	GAGTC	3 cut(s)	19, 145, 485
MmeI	TCCRAC	2 cut(s)	164, 229
MnlI	CCTC	9 cut(s)	234, 245, 259, 262, 361, 412, 447, 484, 533
Mph1103I	ATGCAT	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	176
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	61
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	8 cut(s)	58, 153, 156, 281, 290, 429, 471, 480
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	39
NlaIII	CATG	6 cut(s)	43, 156, 508, 517, 568, 576
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	561
PkrI	GCNGC	6 cut(s)	34, 54, 149, 158, 161, 283
PleI	GAGTC	3 cut(s)	19, 144, 484
PpsI	GAGTC	3 cut(s)	19, 144, 484
Psp124BI	GAGCTC	3 cut(s)	168, 261, 390
PspFI	CCCAGC	2 cut(s)	319, 460
SacI	GAGCTC	3 cut(s)	168, 261, 390
SalI	GTCGAC	2 cut(s)	8, 73
SatI	GCNGC	6 cut(s)	33, 53, 148, 157, 160, 282
SchI	GAGTC	3 cut(s)	19, 145, 485
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	4 cut(s)	168, 261, 390, 425
SfaNI	GCATC	5 cut(s)	306, 336, 385, 419, 447
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	2 cut(s)	281, 441
SstI	GAGCTC	3 cut(s)	168, 261, 390
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	39, 78
TaaI	ACNGT	5 cut(s)	7, 102, 200, 206, 247
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	9, 74, 107, 134, 168, 519
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	5 cut(s)	32, 52, 147, 156, 159
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	9, 74
XmnI	GAANNNNTTC	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.