Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

4062666 .. 4065075

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACCAAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAATACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAAGATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCTTCGTCCTGACCTCAAGCGTGGCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACAGGTGGTCTCAGATTGCAGCACGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCTGGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAACTTAATCAACAACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTGGATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGAACAAGGCTTCGTCAACCCTTCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCGTGCAATGACGATTTTACCCCTTATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAAGGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATAAACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGACCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACACTGAGGTTCCTTCGTTTTACTTCAACTTCAAACAAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.54

Weight (kDa)

5.78

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 67	5.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	23 - 82	1.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	73 - 116	2.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 124	8.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	734
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	4 cut(s)	197, 252, 726, 739
AcsI	RAATTY	2 cut(s)	334, 770
AfaI	GTAC	3 cut(s)	34, 636, 686
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	4 cut(s)	158, 721, 823, 829
AjnI	CCWGG	1 cut(s)	307
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	4 cut(s)	29, 91, 174, 483
AluI	AGCT	4 cut(s)	29, 91, 174, 483
Alw26I	GTCTC	3 cut(s)	75, 291, 751
AlwI	GGATC	4 cut(s)	197, 252, 726, 739
Aor13HI	TCCGGA	1 cut(s)	734
ApeKI	GCWGC	3 cut(s)	26, 174, 296
ApoI	RAATTY	2 cut(s)	334, 770
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	315, 778
AsuHPI	GGTGA	3 cut(s)	29, 405, 689
AvaII	GGWCC	2 cut(s)	315, 778
AxyI	CCTNAGG	2 cut(s)	75, 747
BamHI	GGATCC	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	87, 173
BbvI	GCAGC	3 cut(s)	38, 161, 308
BccI	CCATC	2 cut(s)	275, 602
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	75, 291, 751
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	3 cut(s)	27, 175, 297
BlsI	GCNGC	3 cut(s)	28, 176, 298
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	315, 778
BmgT120I	GGNCC	2 cut(s)	315, 778
BmiI	GGNNCC	3 cut(s)	733, 779, 807
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	84, 458
BoxI	GACNNNNGTC	1 cut(s)	67
BpiI	GAAGAC	2 cut(s)	87, 173
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	2 cut(s)	197, 219
BsaI	GGTCTC	3 cut(s)	75, 291, 751
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	761, 787
Bse21I	CCTNAGG	2 cut(s)	75, 747
Bse3DI	GCAATG	3 cut(s)	21, 118, 589
BseAI	TCCGGA	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	128, 267, 404
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	3 cut(s)	21, 118, 589
BseMII	CTCAG	4 cut(s)	66, 302, 738, 792
BseNI	ACTGG	2 cut(s)	761, 787
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	38, 161, 308
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	2 cut(s)	75, 791
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	3 cut(s)	75, 291, 751
BsmFI	GGGAC	2 cut(s)	75, 791
Bso31I	GGTCTC	3 cut(s)	75, 291, 751
Bsp13I	TCCGGA	1 cut(s)	734
Bsp143I	GATC	5 cut(s)	189, 244, 327, 567, 731
BspACI	CCGC	1 cut(s)	447
BspCNI	CTCAG	4 cut(s)	67, 301, 739, 793
BspEI	TCCGGA	1 cut(s)	734
BspLI	GGNNCC	3 cut(s)	733, 779, 807
BspPI	GGATC	4 cut(s)	197, 252, 726, 739
BspTNI	GGTCTC	3 cut(s)	75, 291, 751
BsrDI	GCAATG	3 cut(s)	21, 118, 589
BsrI	ACTGG	2 cut(s)	761, 787
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	189, 244, 327, 567, 731
Bst2UI	CCWGG	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	234, 442
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	5 cut(s)	75, 288, 709, 747, 801
BstF5I	GGATG	3 cut(s)	128, 267, 404
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	192, 247, 330, 570, 734
BstMAI	GTCTC	3 cut(s)	75, 291, 751
BstMBI	GATC	5 cut(s)	189, 244, 327, 567, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 146, 174, 579
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	38, 161, 308
BstV2I	GAAGAC	2 cut(s)	87, 173
BstX2I	RGATCY	2 cut(s)	244, 731
BstYI	RGATCY	2 cut(s)	244, 731
Bsu36I	CCTNAGG	2 cut(s)	75, 747
BtsCI	GGATG	3 cut(s)	128, 267, 404
BtsIMutI	CAGTG	2 cut(s)	768, 798
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	315, 778
CpoI	CGGWCCG	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	33, 635, 685
CspI	CGGWCCG	1 cut(s)	315
CviAII	CATG	3 cut(s)	103, 487, 565
CviJI	RGCY	9 cut(s)	10, 20, 29, 91, 174, 364, 483, 507, 573
CviKI_1	RGCY	9 cut(s)	10, 20, 29, 91, 174, 364, 483, 507, 573
CviQI	GTAC	3 cut(s)	33, 635, 685
DdeI	CTNAG	5 cut(s)	75, 288, 709, 747, 801
DpnI	GATC	5 cut(s)	191, 246, 329, 569, 733
DpnII	GATC	5 cut(s)	189, 244, 327, 567, 731
Eam1104I	CTCTTC	2 cut(s)	234, 442
EarI	CTCTTC	2 cut(s)	234, 442
Eco31I	GGTCTC	3 cut(s)	75, 291, 751
Eco47I	GGWCC	2 cut(s)	315, 778
Eco81I	CCTNAGG	2 cut(s)	75, 747
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	106, 490, 568
FaqI	GGGAC	2 cut(s)	75, 791
FatI	CATG	3 cut(s)	102, 486, 564
FauNDI	CATATG	1 cut(s)	839
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	27, 175, 297
FokI	GGATG	3 cut(s)	135, 254, 391
Fsp4HI	GCNGC	3 cut(s)	27, 175, 297
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	27, 175, 297
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	1 cut(s)	735
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	106, 490, 568
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	2 cut(s)	83, 431
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	3 cut(s)	29, 405, 689
Hpy166II	GTNNAC	2 cut(s)	514, 625
Hpy188I	TCNGA	3 cut(s)	291, 315, 379
Hpy188III	TCNNGA	6 cut(s)	74, 206, 236, 331, 340, 735
Hpy8I	GTNNAC	2 cut(s)	514, 625
HpyAV	CCTTC	4 cut(s)	52, 528, 668, 819
HpyCH4V	TGCA	5 cut(s)	26, 97, 296, 582, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 146, 174, 579
HpyF3I	CTNAG	5 cut(s)	75, 288, 709, 747, 801
Hsp92II	CATG	3 cut(s)	106, 490, 568
HspAI	GCGC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	734
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	5 cut(s)	189, 244, 327, 567, 731
Lsp1109I	GCAGC	3 cut(s)	38, 161, 308
LweI	GCATC	2 cut(s)	84, 458
MaeI	CTAG	1 cut(s)	30
MalI	GATC	5 cut(s)	191, 246, 329, 569, 733
MboI	GATC	5 cut(s)	189, 244, 327, 567, 731
MflI	RGATCY	2 cut(s)	244, 731
MluCI	AATT	3 cut(s)	334, 442, 770
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	5 cut(s)	107, 167, 293, 411, 578
MroI	TCCGGA	1 cut(s)	734
MseI	TTAA	3 cut(s)	107, 392, 465
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	26, 146, 174, 579
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	5 cut(s)	189, 244, 327, 567, 731
NlaIII	CATG	3 cut(s)	106, 490, 568
NlaIV	GGNNCC	3 cut(s)	733, 779, 807
NmeAIII	GCCGAG	1 cut(s)	252
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	28, 176, 298
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	778
PscI	ACATGT	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	733, 779, 807
PspPI	GGNCC	2 cut(s)	315, 778
PspPPI	RGGWCCY	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	244, 731
RsaI	GTAC	3 cut(s)	34, 636, 686
RsaNI	GTAC	3 cut(s)	33, 635, 685
Rsr2I	CGGWCCG	1 cut(s)	315
RsrII	CGGWCCG	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	107, 392, 465
SatI	GCNGC	3 cut(s)	27, 175, 297
Sau3AI	GATC	5 cut(s)	189, 244, 327, 567, 731
Sau96I	GGNCC	2 cut(s)	315, 778
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	84, 458
SinI	GGWCC	2 cut(s)	315, 778
SmlI	CTYRAG	2 cut(s)	212, 234
SmoI	CTYRAG	2 cut(s)	212, 234
Sse9I	AATT	3 cut(s)	334, 442, 770
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	307
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	334, 442, 770
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	3 cut(s)	107, 392, 465
Tru9I	TTAA	3 cut(s)	107, 392, 465
TscAI	CASTG	2 cut(s)	768, 805
TseI	GCWGC	3 cut(s)	26, 174, 296
TspDTI	ATGAA	4 cut(s)	68, 251, 475, 809
TspRI	CASTG	2 cut(s)	768, 805
VpaK11BI	GGWCC	2 cut(s)	315, 778
XapI	RAATTY	2 cut(s)	334, 770
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.