Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

55924336 .. 55939953

Gene Structure 15618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG358700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGGAAGCCGGAACCCTCTGTTGTAAGTAGTACCGGGAAGAATAACAAGAACAACAGCATGAGTAACAAGCTAAGGAAGGGTTTGTGGTCGCCGGAAGAAGACGAGAAGCTGATGAGGTACATGCTCAACAATGGCCAAGGCTGCTGGAGCGACGTGGCAAGAAATGCTGGCCTCGAGAGGTGCGGCAAGAGTTGCAGGCTTCGTTGGATCAATTACTTGAGACCTGACCTTAAGAGAGGTGCCTTTTCTCCCCAAGAAGAAGACCTCATCATCCACTTCCATTCCCTTCTTGGTAACAGGTGGTCTCAAATTGCAGCACGCTTGCCAGGACGAACTGACAATGAAATCAAGAACTTCTGGAATTCGACCATAAAGAAACGTCTGAAGGTTCTGTCCTCCTCCTCCTCCTCCACTGCCTCACCAAACGCAAGTGATTCTTCCTCGGATCAGCCTAACAACAAAGACTTTTTCACCGCGGCCGGAGGAGGAGGAGGTTTCATGAACATCATTCCACCGTCAATGATGCCCATTTACGGGGATTCATCCATGCAATCAACCTCCCTCATCAACCACATGTTTGATCCCTTTCCAATGGTCGAGCATGGCGGGTACTACAACAATGGAAACCCATGCACTGCACAGATCGGATCATCAGTTGGTAGTGGTGCTGATGATTGTGGGTTTGAAGAAAATATTGAAGCGTTTGGGAACGTCAATATCGGGGTAGAAGAAGACATCTTTGTGCCTCCCCTAGAGAGTGTAAGCACCACTGACCAGGATCAAAATCTAAAAACGGAAACTATCTTCTATGATAATAATAATTACTACAGTAACAGTAACAATATCATCAAAGGTGAAAACATGATCGGGGTTGGGAATTACTTTGAAGATGATCAGGATCAAGGGCTAACAATGGGAGAGTGGGACTTGGAGGATCTGATGAAAGATGTTTCCTCCTTTCCTTTTCTTGACTACCAGATCAGATTACAGGGATCTCTCAAAATTTCGATCTTTCATTTCATAATCTTAAGCGCCGACTTACCCTATTTTTCTTGGCTTCTGTCCAAGAGCTTTAAAAGAAGGCCTGTATCTAGGATTACTTTAACAAGCAGAGTAGGCATTATTGAATGCTTCGAACCAAACGTTGGAGCAGTTGAACTTGCAGATGGATCAAGAAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

396

Amino Acids

44.12

Weight (kDa)

5.15

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 74	2.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	30 - 88	7.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	80 - 123	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	83 - 128	2.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	1148
AccII	CGCG	1 cut(s)	479
AciI	CCGC	4 cut(s)	186, 477, 479, 609
AclI	AACGTT	1 cut(s)	1146
AclWI	GGATC	9 cut(s)	218, 456, 578, 658, 789, 909, 945, 1003, 1180
AcoI	YGGCCR	2 cut(s)	136, 480
AcsI	RAATTY	2 cut(s)	364, 1005
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	34, 122, 614
AfiI	CCNNNNNNNGG	3 cut(s)	536, 537, 1148
AflII	CTTAAG	2 cut(s)	233, 1030
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	5 cut(s)	689, 701, 890, 1130, 1160
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	328, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	1131, 1163
AluBI	AGCT	3 cut(s)	73, 112, 1074
AluI	AGCT	3 cut(s)	73, 112, 1074
Alw26I	GTCTC	2 cut(s)	217, 312
AlwI	GGATC	9 cut(s)	218, 456, 578, 658, 789, 909, 945, 1003, 1180
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	136, 172, 480, 1085
ApeKI	GCWGC	2 cut(s)	144, 317
ApoI	RAATTY	2 cut(s)	364, 1005
Asp700I	GAANNNNTTC	1 cut(s)	1183
AspLEI	GCGC	1 cut(s)	1037
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	414, 466, 869
AsuII	TTCGAA	1 cut(s)	1137
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	3 cut(s)	108, 270, 741
BbvI	GCAGC	2 cut(s)	131, 329
BccI	CCATC	1 cut(s)	1163
BciT130I	CCWGG	2 cut(s)	330, 779
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	217, 312
BfaI	CTAG	2 cut(s)	755, 1095
BfmI	CTRYAG	1 cut(s)	829
BfoI	RGCGCY	1 cut(s)	1038
BfrI	CTTAAG	2 cut(s)	233, 1030
BisI	GCNGC	4 cut(s)	145, 187, 318, 480
BlsI	GCNGC	4 cut(s)	146, 188, 319, 481
Bme1390I	CCNGG	3 cut(s)	37, 330, 779
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	15, 244
BmrFI	CCNGG	3 cut(s)	37, 330, 779
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	3 cut(s)	108, 270, 741
BpmI	CTGGAG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	2 cut(s)	786, 900
BsaI	GGTCTC	2 cut(s)	217, 312
BsaJI	CCNNGG	3 cut(s)	139, 444, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 537, 1148
Bse8I	GATNNNNATC	2 cut(s)	786, 900
BseBI	CCWGG	2 cut(s)	330, 779
BseDI	CCNNGG	3 cut(s)	139, 444, 477
BseGI	GGATG	2 cut(s)	273, 545
BseJI	GATNNNNATC	2 cut(s)	786, 900
BseLI	CCNNNNNNNGG	3 cut(s)	536, 537, 1148
BseRI	GAGGAG	7 cut(s)	391, 394, 397, 400, 501, 504, 507
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	131, 329
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	4 cut(s)	138, 174, 482, 1087
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	11, 36, 95, 483
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	3 cut(s)	536, 537, 1148
BsmAI	GTCTC	2 cut(s)	217, 312
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	1136
BsnI	GGCC	4 cut(s)	138, 174, 482, 1087
Bso31I	GGTCTC	2 cut(s)	217, 312
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	1137
BspACI	CCGC	4 cut(s)	186, 477, 479, 609
BspANI	GGCC	4 cut(s)	138, 174, 482, 1087
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	15, 244
BspPI	GGATC	9 cut(s)	218, 456, 578, 658, 789, 909, 945, 1003, 1180
BspT104I	TTCGAA	1 cut(s)	1137
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	2 cut(s)	233, 1030
BspTNI	GGTCTC	2 cut(s)	217, 312
BssECI	CCNNGG	3 cut(s)	139, 444, 477
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	330, 779
Bst4CI	ACNGT	3 cut(s)	519, 833, 839
BstAFI	CTTAAG	2 cut(s)	233, 1030
BstAPI	GCANNNNNTGC	2 cut(s)	167, 195
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	4 cut(s)	172, 200, 322, 326
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	273, 545
BstFNI	CGCG	1 cut(s)	479
BstH2I	RGCGCY	1 cut(s)	1038
BstHHI	GCGC	1 cut(s)	1037
BstMAI	GTCTC	2 cut(s)	217, 312
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 150, 167, 195, 1119
BstNI	CCWGG	2 cut(s)	330, 779
BstNSI	RCATGY	2 cut(s)	127, 580
BstSCI	CCNGG	3 cut(s)	35, 328, 777
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	131, 329
BstV2I	GAAGAC	3 cut(s)	108, 270, 741
BstX2I	RGATCY	2 cut(s)	937, 995
BstYI	RGATCY	2 cut(s)	937, 995
BstZI	CGGCCG	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	138, 174, 482, 1087
BtgI	CCRYGG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	273, 545
BtsI	GCAGTG	2 cut(s)	414, 636
BtsIMutI	CAGTG	3 cut(s)	414, 636, 771
Cac8I	GCNNGC	4 cut(s)	172, 200, 322, 326
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	1037
Cfr42I	CCGCGG	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	33, 121, 613
CviAII	CATG	8 cut(s)	61, 124, 502, 550, 577, 605, 633, 865
CviQI	GTAC	3 cut(s)	33, 121, 613
DdeI	CTNAG	1 cut(s)	74
DraI	TTTAAA	1 cut(s)	1078
EaeI	YGGCCR	2 cut(s)	136, 480
EagI	CGGCCG	1 cut(s)	480
EclXI	CGGCCG	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	1087
Eco31I	GGTCTC	2 cut(s)	217, 312
Eco52I	CGGCCG	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	328, 777
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	8 cut(s)	64, 127, 505, 553, 580, 608, 636, 868
FalI	AAGNNNNNCTT	4 cut(s)	424, 456, 1168, 1171
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	8 cut(s)	60, 123, 501, 549, 576, 604, 632, 864
FauI	CCCGC	1 cut(s)	602
FbaI	TGATCA	1 cut(s)	895
Fnu4HI	GCNGC	4 cut(s)	145, 187, 318, 480
FokI	GGATG	2 cut(s)	260, 532
Fsp4HI	GCNGC	4 cut(s)	145, 187, 318, 480
FspBI	CTAG	2 cut(s)	755, 1095
GlaI	GCGC	1 cut(s)	1036
GluI	GCNGC	4 cut(s)	145, 187, 318, 480
GsuI	CTGGAG	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	1038
HaeIII	GGCC	4 cut(s)	138, 174, 482, 1087
HapII	CCGG	4 cut(s)	11, 36, 95, 483
HhaI	GCGC	1 cut(s)	1037
Hin1II	CATG	8 cut(s)	64, 127, 505, 553, 580, 608, 636, 868
Hin6I	GCGC	1 cut(s)	1035
HinP1I	GCGC	1 cut(s)	1035
HinfI	GANTC	2 cut(s)	437, 542
HpaII	CCGG	4 cut(s)	11, 36, 95, 483
HphI	GGTGA	3 cut(s)	414, 466, 869
Hpy188I	TCNGA	5 cut(s)	387, 448, 650, 942, 986
Hpy188III	TCNNGA	8 cut(s)	178, 352, 361, 502, 899, 971, 1176, 1188
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	73, 299, 382, 1077
HpyCH4III	ACNGT	3 cut(s)	519, 833, 839
HpyCH4IV	ACGT	4 cut(s)	156, 382, 714, 1146
HpyCH4V	TGCA	6 cut(s)	198, 317, 553, 636, 641, 1166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 150, 167, 195, 1119
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	4 cut(s)	156, 382, 714, 1146
Hsp92II	CATG	8 cut(s)	64, 127, 505, 553, 580, 608, 636, 868
HspAI	GCGC	1 cut(s)	1035
Ksp22I	TGATCA	1 cut(s)	895
KspI	CCGCGG	1 cut(s)	480
LmnI	GCTCC	2 cut(s)	150, 1151
Lsp1109I	GCAGC	2 cut(s)	131, 329
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	755, 1095
MaeII	ACGT	4 cut(s)	156, 382, 714, 1146
MaeIII	GTNAC	4 cut(s)	65, 296, 833, 839
MflI	RGATCY	2 cut(s)	937, 995
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	6 cut(s)	214, 312, 364, 823, 880, 1005
MluNI	TGGCCA	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	188, 1129
Mox20I	TGGCCA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	1183
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	4 cut(s)	234, 1031, 1077, 1106
MslI	CAYNNNNRTG	1 cut(s)	743
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	479
MspCI	CTTAAG	2 cut(s)	233, 1030
MspI	CCGG	4 cut(s)	11, 36, 95, 483
MspR9I	CCNGG	3 cut(s)	37, 330, 779
Mva1269I	GAATGC	1 cut(s)	1136
MvaI	CCWGG	2 cut(s)	330, 779
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	5 cut(s)	144, 150, 167, 195, 1119
NciI	CCSGG	1 cut(s)	37
NlaIII	CATG	8 cut(s)	64, 127, 505, 553, 580, 608, 636, 868
NlaIV	GGNNCC	2 cut(s)	15, 244
NspI	RCATGY	2 cut(s)	127, 580
NspV	TTCGAA	1 cut(s)	1137
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	1143
PctI	GAATGC	1 cut(s)	1136
PdmI	GAANNNNTTC	1 cut(s)	1183
PfeI	GAWTC	2 cut(s)	437, 542
PflMI	CCANNNNNTGG	1 cut(s)	1148
PkrI	GCNGC	4 cut(s)	146, 188, 319, 481
PscI	ACATGT	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	1146
Psp6I	CCWGG	2 cut(s)	328, 777
PspGI	CCWGG	2 cut(s)	328, 777
PspN4I	GGNNCC	2 cut(s)	15, 244
PsuI	RGATCY	2 cut(s)	937, 995
RsaI	GTAC	3 cut(s)	34, 122, 614
RsaNI	GTAC	3 cut(s)	33, 121, 613
RseI	CAYNNNNRTG	1 cut(s)	743
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	234, 1031, 1077, 1106
SatI	GCNGC	4 cut(s)	145, 187, 318, 480
ScrFI	CCNGG	3 cut(s)	37, 330, 779
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	1137
SgrBI	CCGCGG	1 cut(s)	480
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	4 cut(s)	176, 220, 233, 1030
SmoI	CTYRAG	4 cut(s)	176, 220, 233, 1030
Sse9I	AATT	6 cut(s)	214, 312, 364, 823, 880, 1005
SseBI	AGGCCT	1 cut(s)	1087
SsiI	CCGC	4 cut(s)	186, 477, 479, 609
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	755, 1095
StuI	AGGCCT	1 cut(s)	1087
StyD4I	CCNGG	3 cut(s)	35, 328, 777
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	519, 833, 839
TaiI	ACGT	4 cut(s)	159, 385, 717, 1149
TaqI	TCGA	5 cut(s)	177, 368, 600, 1010, 1137
TasI	AATT	6 cut(s)	214, 312, 364, 823, 880, 1005
TauI	GCSGC	2 cut(s)	189, 482
TfiI	GAWTC	2 cut(s)	437, 542
Tru1I	TTAA	4 cut(s)	234, 1031, 1077, 1106
Tru9I	TTAA	4 cut(s)	234, 1031, 1077, 1106
TscAI	CASTG	3 cut(s)	421, 643, 778
TseI	GCWGC	2 cut(s)	144, 317
TspDTI	ATGAA	7 cut(s)	360, 490, 518, 534, 959, 1007, 1012
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	3 cut(s)	421, 643, 778
Van91I	CCANNNNNTGG	1 cut(s)	1148
Vha464I	CTTAAG	2 cut(s)	233, 1030
XapI	RAATTY	2 cut(s)	364, 1005
XceI	RCATGY	2 cut(s)	127, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	1183
XspI	CTAG	2 cut(s)	755, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.