Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Forward (+)

16495968 .. 16498953

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGGAAGCCAGATCCCTCACCAGCAGCAGCAGCAGCAAAGAACAACAACAATAATTCCAACAATACCAGTAAGCTGAGAAAGGGTTTGTGGTCACCAGAAGAGGATGACAAGCTGATGAGCTACATGATCAACAATGGCCAAGGCTGCTGGAGCGATGTAGCCAGAAATGCTGGCCTGCAGAGGTGTGGCAAGAGTTGCAGGCTGCGTTGGATCAACTACCTGCGGCCTGACCTGAAACGAGGCGCCTTTTCCCCCCAAGAAGAAGAACTCATCATCCATTTACATTCTCTCCTTGGAAACAGGTGGTCGCAAATTGCAGCACGCTTGCCAGGGAGAACTGACAATGAAATAAAGAACTTCTGGAATTCAACAATAAAGAAAAGGCTAAAGAATTTGTCATCCTCTAATGCCTCGCCAAACACAAGCGATTCATCCTCGGAGCCTAAAGATCATCATGCTATGCTGGCCGGAGGCTTCATTCCTGGGCAAGAACATGGCATGATGCCTCTTTACATGGATTCATCACCGTCGTTGATGCAGTCTACGGTCCTCAACCACATGTTCGATCCGTTGCCTATGCTCGATCACGCCGGCCTAACCTTGCCCGGCGGTGCAGGTGGATACTACAATGCCACCCAATGCACCACACAAATCAATGGAGTTGGAGGTGATTGCTGTTTTGGAGACAATGGAGTGTTTGAGGTTGGTGGGGGTGTTGATATTGGGGTAGAAGGAGAGATATTTGTTCCTGCCCTAGAGTGTGTGAGCACTGAAGATCAGAATCTTAAAACTGAACCCATCTATGATCATAGGAACACCACCAATAACAATTACTACAATAATATAAATAGTATCACCAACACTAATTACAATAATAATATTAAAGTTGAGAATATTGGGGTGGGAAATTACTATGATGACCAGGAAGAGCTAACAATGGGGGAGTGGGACTTGGAGGATCTGATGAAGGATGTTTCCTCTGCCTCCTTTCCTTTTCTTGACTATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.43

Weight (kDa)

5.05

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
Acc36I	ACCTGC	2 cut(s)	231, 608
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	2 cut(s)	226, 612
AclWI	GGATC	4 cut(s)	8, 221, 563, 969
AcoI	YGGCCR	2 cut(s)	139, 468
AcsI	RAATTY	2 cut(s)	367, 394
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	372
AjnI	CCWGG	3 cut(s)	331, 484, 924
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	4 cut(s)	76, 115, 123, 934
AluI	AGCT	4 cut(s)	76, 115, 123, 934
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	4 cut(s)	8, 221, 563, 969
AoxI	GGCC	5 cut(s)	139, 175, 227, 468, 595
ApeKI	GCWGC	7 cut(s)	26, 29, 32, 35, 147, 205, 320
ApoI	RAATTY	2 cut(s)	367, 394
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	5 cut(s)	12, 87, 519, 683, 850
AvaII	GGWCC	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	7 cut(s)	38, 41, 44, 47, 134, 192, 332
BccI	CCATC	1 cut(s)	809
BciT130I	CCWGG	3 cut(s)	333, 486, 926
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	2 cut(s)	129, 808
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	2 cut(s)	231, 608
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	8 cut(s)	27, 30, 33, 36, 148, 206, 227, 321
BlsI	GCNGC	8 cut(s)	28, 31, 34, 37, 149, 207, 228, 322
Bme1390I	CCNGG	4 cut(s)	333, 486, 609, 926
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	2 cut(s)	247, 444
BmrFI	CCNGG	4 cut(s)	333, 486, 609, 926
BmsI	GCATC	2 cut(s)	495, 528
BpmI	CTGGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	142, 295, 332, 438, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	3 cut(s)	333, 486, 926
BseDI	CCNNGG	5 cut(s)	142, 295, 332, 438, 485
BseGI	GGATG	5 cut(s)	112, 276, 401, 434, 979
BseJI	GATNNNNATC	1 cut(s)	783
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	7 cut(s)	38, 41, 44, 47, 134, 192, 332
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	5 cut(s)	141, 177, 229, 470, 597
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	3 cut(s)	471, 594, 609
BslFI	GGGAC	1 cut(s)	965
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	5 cut(s)	141, 177, 229, 470, 597
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp143I	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
BspACI	CCGC	2 cut(s)	226, 612
BspANI	GGCC	5 cut(s)	141, 177, 229, 470, 597
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	247, 444
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	2 cut(s)	231, 608
BspPI	GGATC	4 cut(s)	8, 221, 563, 969
BspQI	GCTCTTC	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	5 cut(s)	142, 295, 332, 438, 485
BssMI	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	142, 295
Bst2UI	CCWGG	3 cut(s)	333, 486, 926
Bst4CI	ACNGT	2 cut(s)	531, 550
Bst6I	CTCTTC	2 cut(s)	96, 924
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	7 cut(s)	175, 179, 203, 325, 329, 468, 595
BstDEI	CTNAG	1 cut(s)	77
BstEII	GGTNACC	1 cut(s)	93
BstF5I	GGATG	5 cut(s)	112, 276, 401, 434, 979
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	9 cut(s)	16, 132, 216, 454, 571, 589, 781, 811, 964
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 35, 147, 153, 170, 198, 467
BstNI	CCWGG	3 cut(s)	333, 486, 926
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	93
BstSCI	CCNGG	4 cut(s)	331, 484, 607, 924
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	7 cut(s)	38, 41, 44, 47, 134, 192, 332
BstX2I	RGATCY	2 cut(s)	13, 961
BstYI	RGATCY	2 cut(s)	13, 961
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	5 cut(s)	141, 177, 229, 470, 597
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	5 cut(s)	112, 276, 401, 434, 979
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	2 cut(s)	231, 608
Cac8I	GCNNGC	7 cut(s)	175, 179, 203, 325, 329, 468, 595
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	550
CviAII	CATG	6 cut(s)	127, 458, 497, 502, 517, 562
DdeI	CTNAG	1 cut(s)	77
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	9 cut(s)	15, 131, 215, 453, 570, 588, 780, 810, 963
DpnII	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
EaeI	YGGCCR	2 cut(s)	139, 468
Eam1104I	CTCTTC	2 cut(s)	96, 924
EarI	CTCTTC	2 cut(s)	96, 924
Eco130I	CCWWGG	2 cut(s)	142, 295
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	331, 484, 924
EcoT14I	CCWWGG	2 cut(s)	142, 295
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	142, 295
FaeI	CATG	6 cut(s)	130, 461, 500, 505, 520, 565
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	6 cut(s)	126, 457, 496, 501, 516, 561
FbaI	TGATCA	2 cut(s)	129, 808
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	8 cut(s)	27, 30, 33, 36, 148, 206, 227, 321
FokI	GGATG	5 cut(s)	119, 263, 388, 421, 986
Fsp4HI	GCNGC	8 cut(s)	27, 30, 33, 36, 148, 206, 227, 321
FspBI	CTAG	1 cut(s)	758
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	8 cut(s)	27, 30, 33, 36, 148, 206, 227, 321
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	5 cut(s)	141, 177, 229, 470, 597
HapII	CCGG	3 cut(s)	471, 594, 609
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	6 cut(s)	130, 461, 500, 505, 520, 565
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	431, 521, 784
HpaII	CCGG	3 cut(s)	471, 594, 609
HphI	GGTGA	5 cut(s)	12, 87, 519, 683, 850
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	3 cut(s)	442, 783, 966
Hpy188III	TCNNGA	2 cut(s)	364, 1001
Hpy8I	GTNNAC	1 cut(s)	546
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	2 cut(s)	728, 964
HpyCH4III	ACNGT	2 cut(s)	531, 550
HpyCH4V	TGCA	6 cut(s)	181, 201, 320, 541, 617, 645
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 35, 147, 153, 170, 198, 467
HpyF3I	CTNAG	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	6 cut(s)	130, 461, 500, 505, 520, 565
HspAI	GCGC	1 cut(s)	246
KasI	GGCGCC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	593
KroNI	GCCGGC	1 cut(s)	595
Ksp22I	TGATCA	2 cut(s)	129, 808
Kzo9I	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	2 cut(s)	153, 442
Lsp1109I	GCAGC	7 cut(s)	38, 41, 44, 47, 134, 192, 332
LweI	GCATC	2 cut(s)	495, 528
MaeI	CTAG	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	9 cut(s)	15, 131, 215, 453, 570, 588, 780, 810, 963
MboI	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
MboII	GAAGA	5 cut(s)	113, 275, 278, 788, 941
MflI	RGATCY	2 cut(s)	13, 961
MhlI	GDGCHC	1 cut(s)	773
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	7 cut(s)	55, 315, 367, 394, 832, 868, 910
MluNI	TGGCCA	1 cut(s)	141
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	3 cut(s)	84, 191, 646
Mox20I	TGGCCA	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	2 cut(s)	789, 885
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	3 cut(s)	471, 594, 609
MspR9I	CCNGG	4 cut(s)	333, 486, 609, 926
MvaI	CCWGG	3 cut(s)	333, 486, 926
MwoI	GCNNNNNNNGC	7 cut(s)	32, 35, 147, 153, 170, 198, 467
NaeI	GCCGGC	1 cut(s)	595
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
NgoMIV	GCCGGC	1 cut(s)	593
NlaIII	CATG	6 cut(s)	130, 461, 500, 505, 520, 565
NlaIV	GGNNCC	2 cut(s)	247, 444
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	565
PaqCI	CACCTGC	1 cut(s)	608
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	924
PdiI	GCCGGC	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	431, 521, 784
PkrI	GCNGC	8 cut(s)	28, 31, 34, 37, 149, 207, 228, 322
PluTI	GGCGCC	1 cut(s)	249
PscI	ACATGT	1 cut(s)	561
Psp6I	CCWGG	3 cut(s)	331, 484, 924
PspEI	GGTNACC	1 cut(s)	93
PspGI	CCWGG	3 cut(s)	331, 484, 924
PspN4I	GGNNCC	2 cut(s)	247, 444
PspPI	GGNCC	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	13, 961
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	789, 885
SatI	GCNGC	8 cut(s)	27, 30, 33, 36, 148, 206, 227, 321
Sau3AI	GATC	9 cut(s)	13, 129, 213, 451, 568, 586, 778, 808, 961
Sau96I	GGNCC	1 cut(s)	550
ScrFI	CCNGG	4 cut(s)	333, 486, 609, 926
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	495, 528
SfcI	CTRYAG	1 cut(s)	179
SfoI	GGCGCC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	550
Sse9I	AATT	7 cut(s)	55, 315, 367, 394, 832, 868, 910
SsiI	CCGC	2 cut(s)	226, 612
SspDI	GGCGCC	1 cut(s)	245
SspI	AATATT	2 cut(s)	883, 898
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	4 cut(s)	331, 484, 607, 924
StyI	CCWWGG	2 cut(s)	142, 295
TaaI	ACNGT	2 cut(s)	531, 550
TaqI	TCGA	2 cut(s)	567, 585
TasI	AATT	7 cut(s)	55, 315, 367, 394, 832, 868, 910
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	431, 521, 784
Tru1I	TTAA	2 cut(s)	789, 885
Tru9I	TTAA	2 cut(s)	789, 885
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	7 cut(s)	26, 29, 32, 35, 147, 205, 320
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	5 cut(s)	363, 423, 469, 513, 983
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	1 cut(s)	778
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	367, 394
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	545
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.