Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

14262867 .. 14263454

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGACCGGAGGGTTCATTAGTCCCGGGCAAGAACATGGCATGCTGCCACTTTACATGGACTCAACACCATCGTTCATGCAATCTACGATCCTCAACCACATGTTTGATCCATTGCCTATGCTCGATATAAATCATGGCGGCCTAACCTTTCCCGGCGCAGGTGGATACCACAATGCCAACCCATGCATAACACAAAGGGAGATTGAAGTTGTTGTTGGTGGTGTTGGTGATTGTTATAACTTTGGAGAAAATGGAGTGTTTGGGAGTGGTGATGTTGATATTGGGGTAGAAGGAGAGATATTTGTCCCTCCTCTTGAGAGTGTGAGCACTGAAGATCAAAATATTAAAACCGAAACCATCTATGGGGATCATAGAAACCCTACTAGTAGTAATAATAATAATTACTACAATAATATAAATAGCATCCTCACCTGCAATAAAAATATTAAAGGTGAGAGCATAACTGGGGTTGGGAATTACTTTGATGATGATCAGGAAGAGCTCACCATGGGGGACTGGGACTTGGAGGATTTGATTAAAGATGTTTCATCTTCCTCATTTCCTTATCTTGACTACCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

196

Amino Acids

21.34

Weight (kDa)

4.05

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AarI	CACCTGC	2 cut(s)	152, 443
Acc36I	ACCTGC	2 cut(s)	152, 443
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	85, 104, 378
AcuI	CTGAAG	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	161, 366
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	209
AhlI	ACTAGT	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
Alw21I	GWGCWC	2 cut(s)	332, 507
AlwI	GGATC	3 cut(s)	85, 104, 378
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	161
AsuC2I	CCSGG	3 cut(s)	27, 28, 156
AsuHPI	GGTGA	6 cut(s)	16, 242, 284, 424, 467, 499
AvaI	CYCGRG	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	332, 507
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	79, 368
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	3 cut(s)	27, 28, 156
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BfuAI	ACCTGC	2 cut(s)	152, 443
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	47, 142
BlsI	GCNGC	2 cut(s)	48, 143
Bme1390I	CCNGG	3 cut(s)	27, 28, 156
BmeT110I	CYCGRG	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	27, 28, 156
BmrI	ACTGGG	2 cut(s)	477, 529
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	2 cut(s)	477, 529
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	27, 28, 156
BsaBI	GATNNNNATC	2 cut(s)	132, 492
BsaJI	CCNNGG	2 cut(s)	26, 510
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 366
Bse1I	ACTGG	2 cut(s)	472, 524
Bse3DI	GCAATG	1 cut(s)	113
Bse8I	GATNNNNATC	2 cut(s)	132, 492
BseDI	CCNNGG	2 cut(s)	26, 510
BseGI	GGATG	1 cut(s)	426
BseJI	GATNNNNATC	2 cut(s)	132, 492
BseLI	CCNNNNNNNGG	2 cut(s)	161, 366
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	472, 524
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	332, 507
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	9, 27, 156
BslFI	GGGAC	4 cut(s)	9, 293, 530, 536
BslI	CCNNNNNNNGG	2 cut(s)	161, 366
BsmFI	GGGAC	4 cut(s)	9, 293, 530, 536
BsnI	GGCC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	332, 507
Bsp143I	GATC	5 cut(s)	90, 109, 337, 370, 493
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	144
BspMI	ACCTGC	2 cut(s)	152, 443
BspPI	GGATC	3 cut(s)	85, 104, 378
BspQI	GCTCTTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	472, 524
BssECI	CCNNGG	2 cut(s)	26, 510
BssMI	GATC	5 cut(s)	90, 109, 337, 370, 493
BssT1I	CCWWGG	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	510
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	5 cut(s)	93, 112, 340, 373, 496
BstMBI	GATC	5 cut(s)	90, 109, 337, 370, 493
BstNSI	RCATGY	2 cut(s)	46, 106
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	3 cut(s)	25, 26, 154
BstV1I	GCAGC	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	2 cut(s)	152, 443
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	161
Cfr9I	CCCGGG	1 cut(s)	26
CviAII	CATG	8 cut(s)	38, 43, 58, 79, 103, 137, 186, 511
CviJI	RGCY	2 cut(s)	144, 505
CviKI_1	RGCY	2 cut(s)	144, 505
DpnI	GATC	5 cut(s)	92, 111, 339, 372, 495
DpnII	GATC	5 cut(s)	90, 109, 337, 370, 493
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	8 cut(s)	41, 46, 61, 82, 106, 140, 189, 514
FaqI	GGGAC	4 cut(s)	9, 293, 530, 536
FatI	CATG	8 cut(s)	37, 42, 57, 78, 102, 136, 185, 510
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	47, 142
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	47, 142
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	47, 142
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	9, 27, 156
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	8 cut(s)	41, 46, 61, 82, 106, 140, 189, 514
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	9, 27, 156
HphI	GGTGA	6 cut(s)	16, 242, 284, 424, 467, 499
Hpy188III	TCNNGA	3 cut(s)	317, 497, 572
HpyAV	CCTTC	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	82, 189, 438
Hsp92II	CATG	8 cut(s)	41, 46, 61, 82, 106, 140, 189, 514
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	90, 109, 337, 370, 493
LguI	GCTCTTC	1 cut(s)	495
LpnPI	CCDG	8 cut(s)	22, 40, 147, 169, 448, 453, 482, 505
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	92, 111, 339, 372, 495
MboI	GATC	5 cut(s)	90, 109, 337, 370, 493
MboII	GAAGA	3 cut(s)	347, 512, 546
MhlI	GDGCHC	2 cut(s)	332, 507
MluCI	AATT	2 cut(s)	403, 478
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	5, 104, 321, 324, 440, 523, 568
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	3 cut(s)	348, 450, 540
MspI	CCGG	3 cut(s)	9, 27, 156
MspR9I	CCNGG	3 cut(s)	27, 28, 156
NciI	CCSGG	3 cut(s)	27, 28, 156
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	5 cut(s)	90, 109, 337, 370, 493
NlaIII	CATG	8 cut(s)	41, 46, 61, 82, 106, 140, 189, 514
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	191
NspI	RCATGY	2 cut(s)	46, 106
PaeI	GCATGC	1 cut(s)	46
PaqCI	CACCTGC	2 cut(s)	152, 443
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	48, 143
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PscI	ACATGT	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	507
PspEI	GGTNACC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	348, 450, 540
SatI	GCNGC	2 cut(s)	47, 142
Sau3AI	GATC	5 cut(s)	90, 109, 337, 370, 493
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	27, 28, 156
SduI	GDGCHC	2 cut(s)	332, 507
SetI	ASST	5 cut(s)	152, 166, 437, 457, 507
SfaNI	GCATC	1 cut(s)	435
SmaI	CCCGGG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	386
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	2 cut(s)	403, 478
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	2 cut(s)	346, 448
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	25, 26, 154
StyI	CCWWGG	1 cut(s)	510
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	403, 478
TauI	GCSGC	1 cut(s)	144
Tru1I	TTAA	3 cut(s)	348, 450, 540
Tru9I	TTAA	3 cut(s)	348, 450, 540
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	7, 67, 540
TspMI	CCCGGG	1 cut(s)	26
TspRI	CASTG	1 cut(s)	337
XceI	RCATGY	2 cut(s)	46, 106
XmaI	CCCGGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.