Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

28181040 .. 28184672

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1196500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGGAAGCCAGAGCCCTCCTCTGCAGCAGCAGGCAAGAACAACAAAGAGAACAACTCCAACAGTAAGCTCCGAAAGGGTTTGTGGTCGCCGGAGGAGGACGACAAGCTGATGAGGTATATGATCAACAATGGCCAAGGTTGTTGGAGCGATGTGGCAAGAAACGCTGGCCTGCAGAGGTGCGGCAAGAGTTGCAGATTGCGCTGGATCAATTACTTGAGGCCCGACCTTAAGCGAGGTGCCTTTTTGCCCCAAGAAGAAGAGCTCATTATCCATTTGCATTCTCTCCTTGGAAACAGGTGGTCACAAATTGCAGCCCGGCTGCCAGGAAGAACTGACAATGAAATAAAGAATTTCTGGAACTCAACAATAAAGAAAAGGTTAAAGAATTTGTCATCCTCCAATGGCTCACCAAACACAAGCGACTCATCCCCAGAGGCTAAAGATCATCGTGTGGTGGCAGCCAGTAGGTTCATTATTCCCGGCCAAGAACATGGCATGGTGCCAATTTACATGGACTCAACATCTTCATTCATGCAATCTGCGGTCCTCAGCCACATGTTCGATCCATTTCCTGCACTCGATATTGATCAGGGTGGCCTAACCTTGCCCGGTGCAGGTGGATACTACAACGCCAACCCATGCATAACACAAAGGGAGATTGGAGTCGGTGGTGGTGATGATTGTTATAATTTTGGAGGAAACGGAGGGTTTGGGAGTGGGGATGTTGATATTGGGGTAGAAGGAGAGATATTTGTCCCTCCCCTTGAGAGTGTCAGCATTGAAGACCAAAATATTAAAACTGAAACCACCTATGGGGATAGTAAAAATAATAACATTTACTACAATAATATAAATAGCATCCTCACCTGCAATAAAACTAATAAAAATATTAAAGGTGAGAGCATAATTGGGGTTGGGAATTACTTTGACGATGATCAGGAAGAGTTAACAATGGGGGACTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTCCTCCTTTCCTTTTCTTGACTACCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

344

Amino Acids

37.97

Weight (kDa)

5.11

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 73	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	29 - 88	4.7e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	79 - 122	7.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	84 - 129	3.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AarI	CACCTGC	2 cut(s)	608, 878
Acc36I	ACCTGC	2 cut(s)	608, 878
AccB1I	GGYRCC	2 cut(s)	239, 502
AciI	CCGC	2 cut(s)	183, 545
AclWI	GGATC	2 cut(s)	215, 560
AcoI	YGGCCR	2 cut(s)	133, 484
AcsI	RAATTY	2 cut(s)	352, 388
AfiI	CCNNNNNNNGG	2 cut(s)	617, 816
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	70, 109, 265
AluI	AGCT	3 cut(s)	70, 109, 265
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	215, 560
AoxI	GGCC	5 cut(s)	133, 169, 221, 484, 598
ApeKI	GCWGC	5 cut(s)	26, 29, 314, 322, 461
ApoI	RAATTY	2 cut(s)	352, 388
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	222, 547
AsuC2I	CCSGG	3 cut(s)	319, 483, 612
AsuHPI	GGTGA	4 cut(s)	402, 689, 859, 911
AvaII	GGWCC	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	239, 502
BanII	GRGCYC	2 cut(s)	18, 267
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	3 cut(s)	123, 589, 937
BcnI	CCSGG	3 cut(s)	319, 483, 612
BfmI	CTRYAG	2 cut(s)	24, 173
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	608, 878
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	6 cut(s)	27, 30, 184, 315, 323, 462
BlsI	GCNGC	6 cut(s)	28, 31, 185, 316, 324, 463
Bme1390I	CCNGG	4 cut(s)	319, 327, 483, 612
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	222, 547
BmiI	GGNNCC	2 cut(s)	241, 504
BmrFI	CCNGG	4 cut(s)	319, 327, 483, 612
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	1 cut(s)	870
BmuI	ACTGGG	1 cut(s)	973
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	3 cut(s)	37, 41, 73
Bpu10I	CCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	238, 788
BpuMI	CCSGG	3 cut(s)	319, 483, 612
BsaBI	GATNNNNATC	1 cut(s)	588
BsaJI	CCNNGG	2 cut(s)	136, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 816
Bse1I	ACTGG	2 cut(s)	465, 968
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	136, 289
BseGI	GGATG	4 cut(s)	395, 428, 730, 861
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	617, 816
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	2 cut(s)	465, 968
BseRI	GAGGAG	2 cut(s)	10, 110
BseXI	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BsgI	GTGCAG	2 cut(s)	561, 636
BshFI	GGCC	5 cut(s)	135, 171, 223, 486, 600
BshNI	GGYRCC	2 cut(s)	239, 502
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	4 cut(s)	92, 319, 483, 612
BslFI	GGGAC	3 cut(s)	743, 974, 980
BslI	CCNNNNNNNGG	2 cut(s)	617, 816
BsmFI	GGGAC	3 cut(s)	743, 974, 980
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	5 cut(s)	135, 171, 223, 486, 600
Bsp1286I	GDGCHC	2 cut(s)	18, 267
Bsp143I	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
BspACI	CCGC	2 cut(s)	183, 545
BspANI	GGCC	5 cut(s)	135, 171, 223, 486, 600
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	241, 504
BspMAI	CTGCAG	2 cut(s)	28, 177
BspMI	ACCTGC	2 cut(s)	608, 878
BspPI	GGATC	2 cut(s)	215, 560
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	2 cut(s)	239, 502
BspTI	CTTAAG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	465, 968
BssECI	CCNNGG	2 cut(s)	136, 289
BssMI	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
BssT1I	CCWWGG	2 cut(s)	136, 289
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	255, 939
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	34, 169, 173
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	4 cut(s)	395, 428, 730, 861
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	6 cut(s)	126, 210, 448, 568, 592, 940
BstMBI	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	4 cut(s)	317, 325, 481, 610
BstSFI	CTRYAG	2 cut(s)	24, 173
BstV1I	GCAGC	5 cut(s)	38, 41, 309, 326, 473
BstV2I	GAAGAC	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	5 cut(s)	135, 171, 223, 486, 600
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	395, 428, 730, 861
BveI	ACCTGC	2 cut(s)	608, 878
Cac8I	GCNNGC	3 cut(s)	34, 169, 173
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	222, 547
CviAII	CATG	6 cut(s)	494, 499, 514, 535, 559, 642
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	6 cut(s)	125, 209, 447, 567, 591, 939
DpnII	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
EaeI	YGGCCR	2 cut(s)	133, 484
Eam1104I	CTCTTC	2 cut(s)	255, 939
EarI	CTCTTC	2 cut(s)	255, 939
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	136, 289
Eco24I	GRGCYC	2 cut(s)	18, 267
Eco47I	GGWCC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	136, 289
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	2 cut(s)	18, 267
ErhI	CCWWGG	2 cut(s)	136, 289
FaeI	CATG	6 cut(s)	497, 502, 517, 538, 562, 645
FaqI	GGGAC	3 cut(s)	743, 974, 980
FatI	CATG	6 cut(s)	493, 498, 513, 534, 558, 641
FbaI	TGATCA	3 cut(s)	123, 589, 937
Fnu4HI	GCNGC	6 cut(s)	27, 30, 184, 315, 323, 462
FokI	GGATG	4 cut(s)	382, 415, 737, 848
FriOI	GRGCYC	2 cut(s)	18, 267
Fsp4HI	GCNGC	6 cut(s)	27, 30, 184, 315, 323, 462
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	27, 30, 184, 315, 323, 462
HaeIII	GGCC	5 cut(s)	135, 171, 223, 486, 600
HapII	CCGG	4 cut(s)	92, 319, 483, 612
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	6 cut(s)	497, 502, 517, 538, 562, 645
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HinfI	GANTC	3 cut(s)	425, 518, 666
HpaI	GTTAAC	1 cut(s)	951
HpaII	CCGG	4 cut(s)	92, 319, 483, 612
HphI	GGTGA	4 cut(s)	402, 689, 859, 911
Hpy166II	GTNNAC	1 cut(s)	951
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	3 cut(s)	358, 941, 1016
Hpy8I	GTNNAC	1 cut(s)	951
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
HpyF3I	CTNAG	1 cut(s)	551
Hsp92II	CATG	6 cut(s)	497, 502, 517, 538, 562, 645
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	123, 589, 937
KspAI	GTTAAC	1 cut(s)	951
Kzo9I	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	75, 147
Lsp1109I	GCAGC	5 cut(s)	38, 41, 309, 326, 473
LweI	GCATC	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	6 cut(s)	125, 209, 447, 567, 591, 939
MboI	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
MboII	GAAGA	7 cut(s)	269, 272, 342, 519, 797, 956, 990
MhlI	GDGCHC	2 cut(s)	18, 267
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	8 cut(s)	211, 309, 352, 388, 507, 691, 909, 922
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	419, 512, 675
MmeI	TCCRAC	2 cut(s)	84, 125
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	5 cut(s)	231, 383, 798, 894, 950
Msp20I	TGGCCA	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	4 cut(s)	92, 319, 483, 612
MspR9I	CCNGG	4 cut(s)	319, 327, 483, 612
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	164, 192, 201
NciI	CCSGG	3 cut(s)	319, 483, 612
NdeII	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
NlaIII	CATG	6 cut(s)	497, 502, 517, 538, 562, 645
NlaIV	GGNNCC	2 cut(s)	241, 504
NmuCI	GTSAC	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	1 cut(s)	562
PaqCI	CACCTGC	2 cut(s)	608, 878
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	280
PkrI	GCNGC	6 cut(s)	28, 31, 185, 316, 324, 463
PleI	GAGTC	3 cut(s)	419, 512, 674
PpsI	GAGTC	3 cut(s)	419, 512, 674
PscI	ACATGT	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	241, 504
PspPI	GGNCC	2 cut(s)	222, 547
PstI	CTGCAG	2 cut(s)	28, 177
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	5 cut(s)	231, 383, 798, 894, 950
SatI	GCNGC	6 cut(s)	27, 30, 184, 315, 323, 462
Sau3AI	GATC	6 cut(s)	123, 207, 445, 565, 589, 937
Sau96I	GGNCC	2 cut(s)	222, 547
SchI	GAGTC	3 cut(s)	419, 512, 675
ScrFI	CCNGG	4 cut(s)	319, 327, 483, 612
SduI	GDGCHC	2 cut(s)	18, 267
SfaNI	GCATC	1 cut(s)	870
SfcI	CTRYAG	2 cut(s)	24, 173
SinI	GGWCC	1 cut(s)	547
SmlI	CTYRAG	3 cut(s)	217, 230, 767
SmoI	CTYRAG	3 cut(s)	217, 230, 767
Sse9I	AATT	8 cut(s)	211, 309, 352, 388, 507, 691, 909, 922
SsiI	CCGC	2 cut(s)	183, 545
SspI	AATATT	2 cut(s)	796, 892
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	4 cut(s)	317, 325, 481, 610
StyI	CCWWGG	2 cut(s)	136, 289
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	564, 582
TasI	AATT	8 cut(s)	211, 309, 352, 388, 507, 691, 909, 922
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	5 cut(s)	231, 383, 798, 894, 950
Tru9I	TTAA	5 cut(s)	231, 383, 798, 894, 950
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	5 cut(s)	26, 29, 314, 322, 461
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	6 cut(s)	357, 463, 519, 523, 984, 998
TspGWI	ACGGA	1 cut(s)	720
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	352, 388
XceI	RCATGY	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.