Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013417

Physical Location & Seq

Genomic Coordinates Reverse (-)

21905795 .. 21908844

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGGAAGCCGGAACCCTATGCTGTAAGTAATACCGGCGGGAAGAATAACAAGAACAACAGCGGCATGAGTAGTAATAATAAGCTGAGGAAGGGTTTGTGGTCGCCGGAAGAAGACGAGAAGCTGATGAGGTACATGCTCAACAATGGCCAAGGCTGCTGGAGCGACGTGGCGAGAAATGCTGGCCTTGAGAGGTGCGGAAAGAGTTGCAGGCTTCGTTGGATCAATTACTTGAGACCTGACCTTAAGAGAGGTGCCTTTTCTCCCCAAGAAGAAGACCTCATCATCCATTTCCATTCCCTTCTTGGCAACAGGTGGTCTCAAATTGCAGCACGCTTGCCAGGACGAACTGATAACGAAATCAAGAACTTCTGGAATTCGACCATAAAGAAACGTCTAAAAATTCTGTCCTCCTCCTCCTCCACTGCCTCACCAAACGCGAGTGATTCTTCCTCGGAGCAGCCTAACAACAATGACTTCTTCGCCGCGGCCGGAGGAGGAGGAGGGTTCATGAACATCATTCCACCGTCAATGATGCCCATTTACCCTGATTCATCAATGCAAGCCACCTCCCTGATCAACCACATGTTTGATCCCTTTCCGATGGTCGAGCATGGCGGGTACTACAACAATGGAAACCCATGCACTGCTCAGATTGGTTCGGTCGGCAGTGGTAGCAGTACTGGTGATGATTGTGGCTTTGGACAAAATATTGACGTGTTTGGGAACGTCAATATGAGAGTAGAAGAAGACATCTATGTGCCTCCCCTAGAGAGCGTAAGCACCATTGACCACGATCAAAATAATCTCAAAACTGAAACGATCTTCTATGATCATAACAATTACTACAGTAACACTAACAATATCATCAAGGGTGAAAACATGATTGGGGTTGGGAATTACTTTGAAGATGATCATCAGGATCAAGGGTTAACAATGGGGGAGTGGGACTTGGAGGATCTGATGAAAGATGTTTCCTCCTTTCCTTTACTTGACTACCAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.35

Weight (kDa)

5.05

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 78	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	34 - 92	5.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	84 - 127	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	87 - 132	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12870
fragaria_vesca	FvH4_3g28890
malus_domestica	MD03G1176000.v1.1 MD11G1196500.v1.1
prunus_persica	Prupe.4G247800_v2.0.a1
pyrus_communis	pycom03g13330 pycom11g16920
rosa_chinensis	RchiOBHm_Chr5g0051961
rosa_laevigata	RLG00000034850
rosa_multiflora	Rmu_sc0005990.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027530 Rroxscaffold_1G00027670
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5AG348000 Rh5BG358700 Rh5CG384100 Rh5DG374100
rosa_wichuraiana	Rw0G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	2 cut(s)	440, 488
AciI	CCGC	6 cut(s)	39, 63, 198, 486, 488, 618
AclWI	GGATC	4 cut(s)	230, 587, 930, 966
AcoI	YGGCCR	2 cut(s)	148, 489
AcsI	RAATTY	2 cut(s)	376, 402
AfaI	GTAC	3 cut(s)	134, 623, 682
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	2 cut(s)	585, 717
AgsI	TTSAA	1 cut(s)	908
AjiI	CACGTC	2 cut(s)	169, 718
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AluBI	AGCT	2 cut(s)	85, 124
AluI	AGCT	2 cut(s)	85, 124
Alw26I	GTCTC	2 cut(s)	229, 324
AlwI	GGATC	4 cut(s)	230, 587, 930, 966
AoxI	GGCC	3 cut(s)	148, 184, 489
ApeKI	GCWGC	3 cut(s)	156, 329, 460
ApoI	RAATTY	2 cut(s)	376, 402
AsuHPI	GGTGA	3 cut(s)	423, 698, 887
BalI	TGGCCA	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	254
BbsI	GAAGAC	3 cut(s)	120, 282, 756
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	143, 341, 472
BccI	CCATC	1 cut(s)	598
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	3 cut(s)	576, 832, 913
BcoDI	GTCTC	2 cut(s)	229, 324
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	1 cut(s)	847
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	6 cut(s)	64, 157, 330, 461, 486, 489
BlsI	GCNGC	6 cut(s)	65, 158, 331, 462, 487, 490
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	342
BmgBI	CACGTC	2 cut(s)	169, 718
BmiI	GGNNCC	2 cut(s)	15, 256
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	3 cut(s)	120, 282, 756
BpmI	CTGGAG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	209, 253
BsaBI	GATNNNNATC	1 cut(s)	915
BsaI	GGTCTC	2 cut(s)	229, 324
BsaJI	CCNNGG	3 cut(s)	151, 453, 486
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	151, 453, 486
BseGI	GGATG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	915
BseMII	CTCAG	2 cut(s)	77, 665
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	6 cut(s)	403, 406, 409, 510, 513, 516
BseX3I	CGGCCG	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	143, 341, 472
Bsh1236I	CGCG	2 cut(s)	440, 488
Bsh1285I	CGRYCG	2 cut(s)	492, 666
BshFI	GGCC	3 cut(s)	150, 186, 491
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	2 cut(s)	492, 666
BsiSI	CCGG	4 cut(s)	11, 36, 107, 492
BslFI	GGGAC	1 cut(s)	962
BsmAI	GTCTC	2 cut(s)	229, 324
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	3 cut(s)	150, 186, 491
Bso31I	GGTCTC	2 cut(s)	229, 324
Bsp143I	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
BspACI	CCGC	6 cut(s)	39, 63, 198, 486, 488, 618
BspANI	GGCC	3 cut(s)	150, 186, 491
BspCNI	CTCAG	2 cut(s)	78, 664
BspFNI	CGCG	2 cut(s)	440, 488
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	15, 256
BspPI	GGATC	4 cut(s)	230, 587, 930, 966
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	2 cut(s)	229, 324
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	688
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	151, 453, 486
BssMI	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	528, 851
BstAFI	CTTAAG	1 cut(s)	245
BstC8I	GCNNGC	5 cut(s)	184, 212, 334, 338, 564
BstDEI	CTNAG	2 cut(s)	86, 651
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	2 cut(s)	440, 488
BstKTI	GATC	9 cut(s)	225, 579, 595, 799, 825, 835, 916, 925, 961
BstMAI	GTCTC	2 cut(s)	229, 324
BstMBI	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
BstMCI	CGRYCG	2 cut(s)	492, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 162, 179, 675
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	2 cut(s)	139, 589
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	847
BstUI	CGCG	2 cut(s)	440, 488
BstV1I	GCAGC	3 cut(s)	143, 341, 472
BstV2I	GAAGAC	3 cut(s)	120, 282, 756
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BstZI	CGGCCG	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	150, 186, 491
BtgI	CCRYGG	1 cut(s)	486
BtrI	CACGTC	2 cut(s)	169, 718
BtsCI	GGATG	1 cut(s)	285
BtsI	GCAGTG	3 cut(s)	423, 645, 676
BtsIMutI	CAGTG	3 cut(s)	423, 645, 676
Cac8I	GCNNGC	5 cut(s)	184, 212, 334, 338, 564
CciI	TCATGA	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	133, 622, 681
CviAII	CATG	7 cut(s)	67, 136, 511, 586, 614, 642, 883
CviQI	GTAC	3 cut(s)	133, 622, 681
DdeI	CTNAG	2 cut(s)	86, 651
DpnI	GATC	9 cut(s)	224, 578, 594, 798, 824, 834, 915, 924, 960
DpnII	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
EaeI	YGGCCR	2 cut(s)	148, 489
EagI	CGGCCG	1 cut(s)	489
EclXI	CGGCCG	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	2 cut(s)	229, 324
Eco52I	CGGCCG	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	7 cut(s)	70, 139, 514, 589, 617, 645, 886
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	7 cut(s)	66, 135, 510, 585, 613, 641, 882
FauI	CCCGC	2 cut(s)	32, 611
FbaI	TGATCA	3 cut(s)	576, 832, 913
Fnu4HI	GCNGC	6 cut(s)	64, 157, 330, 461, 486, 489
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	6 cut(s)	64, 157, 330, 461, 486, 489
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	6 cut(s)	64, 157, 330, 461, 486, 489
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	150, 186, 491
HapII	CCGG	4 cut(s)	11, 36, 107, 492
Hin1II	CATG	7 cut(s)	70, 139, 514, 589, 617, 645, 886
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	2 cut(s)	446, 551
HpaI	GTTAAC	1 cut(s)	933
HpaII	CCGG	4 cut(s)	11, 36, 107, 492
HphI	GGTGA	3 cut(s)	423, 698, 887
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	4 cut(s)	457, 603, 654, 963
Hpy188III	TCNNGA	4 cut(s)	364, 373, 511, 920
Hpy8I	GTNNAC	1 cut(s)	933
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	85, 311
HpyCH4III	ACNGT	2 cut(s)	528, 851
HpyCH4IV	ACGT	4 cut(s)	168, 394, 717, 729
HpyCH4V	TGCA	4 cut(s)	210, 329, 562, 645
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 162, 179, 675
HpyF3I	CTNAG	2 cut(s)	86, 651
HpySE526I	ACGT	4 cut(s)	168, 394, 717, 729
Hsp92II	CATG	7 cut(s)	70, 139, 514, 589, 617, 645, 886
Ksp22I	TGATCA	3 cut(s)	576, 832, 913
KspAI	GTTAAC	1 cut(s)	933
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
LmnI	GCTCC	2 cut(s)	162, 457
Lsp1109I	GCAGC	3 cut(s)	143, 341, 472
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	4 cut(s)	168, 394, 717, 729
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	9 cut(s)	224, 578, 594, 798, 824, 834, 915, 924, 960
MboI	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
MflI	RGATCY	1 cut(s)	958
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	6 cut(s)	226, 324, 376, 402, 841, 898
MluNI	TGGCCA	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	246, 932
MslI	CAYNNNNRTG	1 cut(s)	758
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	63, 488
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	4 cut(s)	11, 36, 107, 492
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	2 cut(s)	440, 488
MwoI	GCNNNNNNNGC	4 cut(s)	156, 162, 179, 675
NdeII	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
NlaIII	CATG	7 cut(s)	70, 139, 514, 589, 617, 645, 886
NlaIV	GGNNCC	2 cut(s)	15, 256
NspI	RCATGY	2 cut(s)	139, 589
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	446, 551
PkrI	GCNGC	6 cut(s)	65, 158, 331, 462, 487, 490
PscI	ACATGT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	15, 256
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	3 cut(s)	134, 623, 682
RsaNI	GTAC	3 cut(s)	133, 622, 681
RseI	CAYNNNNRTG	1 cut(s)	758
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	246, 932
SatI	GCNGC	6 cut(s)	64, 157, 330, 461, 486, 489
Sau3AI	GATC	9 cut(s)	222, 576, 592, 796, 822, 832, 913, 922, 958
ScaI	AGTACT	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	847
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	3 cut(s)	188, 232, 245
SmoI	CTYRAG	3 cut(s)	188, 232, 245
Sse9I	AATT	6 cut(s)	226, 324, 376, 402, 841, 898
SsiI	CCGC	6 cut(s)	39, 63, 198, 486, 488, 618
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	528, 851
TaiI	ACGT	4 cut(s)	171, 397, 720, 732
TaqI	TCGA	2 cut(s)	380, 609
TaqII	GACCGA	1 cut(s)	652
TasI	AATT	6 cut(s)	226, 324, 376, 402, 841, 898
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	3 cut(s)	66, 488, 491
TfiI	GAWTC	2 cut(s)	446, 551
Tru1I	TTAA	2 cut(s)	246, 932
Tru9I	TTAA	2 cut(s)	246, 932
TscAI	CASTG	3 cut(s)	430, 652, 676
TseI	GCWGC	3 cut(s)	156, 329, 460
TspDTI	ATGAA	4 cut(s)	499, 527, 543, 980
TspRI	CASTG	3 cut(s)	430, 652, 676
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	376, 402
XceI	RCATGY	2 cut(s)	139, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.