AT5G13070

Protein slowmo homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011196
Physical Location & Seq
Forward (+)
4147596 .. 4149391
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13070.1

Sequence Viewer

Length: 552 bp
ATGGTAAAAGCATACAGACAAGAGCATGTTTACAAGCATCCGTGGGAGCGGGTGAGTGCTGCTTCATGGAGGAAGTTTGCAGACCCTGAAAACAAACGCATCCTTTCTCACATCCTTGAAGTCGATACCTTGAACAGGAAACTCGACACTGAGACCGGGAAACTCCACACCACGCGTGCTCTCACCATCCATGCTCCTGGTCCATGGTTTCTCCATAGGATCATTGGTCAGGACATCTGTCACTGTGTTGAATCAACAGTTGTAGATGGCAAATCACGTTCTATGCAGCTAACAACAAAGAACATTAGTCTCAAAAAGTTCATTGAAGTGGAGGAGAGGATAAGATATGATCCGCATCCAGATAATCCATCAGCCTGGACTGTTTGTAGCCAGGAGACAAGCATTCGGATCAAACCCTTGTCGGCTCTGGCCTCAATGGCTGAGAAGGTTGAACAGAAGTGCGCAGAGAAATTCATGCAGAATAGCGCTAAAGGAAGAGAGGTTATGGAGAGGATTTGTAAGTATATGGAAGCAGAATCCGCTCGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRELI

Protein Analysis

183

Amino Acids

21.18

Weight (kDa)

9.1

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRELI PF04707 17 - 178 5.6e-52 PRELI-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 463
AccBSI CCGCTC 2 cut(s) 49, 542
AccII CGCG 1 cut(s) 175
AciI CCGC 3 cut(s) 49, 353, 540
AclWI GGATC 3 cut(s) 227, 344, 416
AcsI RAATTY 1 cut(s) 470
AfeI AGCGCT 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 5 cut(s) 119, 133, 251, 326, 452
AjnI CCWGG 3 cut(s) 196, 374, 390
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 3 cut(s) 146, 314, 389
AlwI GGATC 3 cut(s) 227, 344, 416
AlwNI CAGNNNCTG 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 487
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 59, 286
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 2 cut(s) 464, 488
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 64, 175
AvaII GGWCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 46, 298
BccI CCATC 3 cut(s) 194, 260, 376
BciT130I CCWGG 3 cut(s) 198, 376, 392
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 146, 314, 389
BfoI RGCGCY 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 2 cut(s) 60, 287
BlsI GCNGC 2 cut(s) 61, 288
Bme1390I CCNGG 4 cut(s) 157, 198, 376, 392
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 4 cut(s) 157, 198, 376, 392
BmsI GCATC 3 cut(s) 46, 108, 364
BoxI GACNNNNGTC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 41, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 3 cut(s) 198, 376, 392
BseDI CCNNGG 2 cut(s) 41, 203
BseGI GGATG 5 cut(s) 37, 99, 111, 186, 355
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 141, 432
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 46, 298
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 3 cut(s) 146, 314, 389
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 4 cut(s) 219, 349, 408, 546
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 49, 353, 540
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 142, 433
BspFNI CGCG 1 cut(s) 175
BspPI GGATC 3 cut(s) 227, 344, 416
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 2 cut(s) 49, 542
BssECI CCNNGG 2 cut(s) 41, 203
BssMI GATC 4 cut(s) 219, 349, 408, 546
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 3 cut(s) 198, 376, 392
Bst4CI ACNGT 3 cut(s) 245, 259, 382
Bst6I CTCTTC 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 150, 441
BstDSI CCRYGG 2 cut(s) 41, 203
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 5 cut(s) 37, 99, 111, 186, 355
BstFNI CGCG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 2 cut(s) 464, 488
BstKTI GATC 4 cut(s) 222, 352, 411, 549
BstMAI GTCTC 3 cut(s) 146, 314, 389
BstMBI GATC 4 cut(s) 219, 349, 408, 546
BstMWI GCNNNNNNNGC 2 cut(s) 437, 539
BstNI CCWGG 3 cut(s) 198, 376, 392
BstNSI RCATGY 1 cut(s) 29
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 4 cut(s) 155, 196, 374, 390
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 46, 298
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 2 cut(s) 197, 375
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 2 cut(s) 41, 203
BtsCI GGATG 5 cut(s) 37, 99, 111, 186, 355
BtsIMutI CAGTG 2 cut(s) 147, 241
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 2 cut(s) 464, 488
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 5 cut(s) 26, 66, 191, 204, 475
CviJI RGCY 6 cut(s) 289, 374, 390, 425, 431, 440
CviKI_1 RGCY 6 cut(s) 289, 374, 390, 425, 431, 440
DdeI CTNAG 2 cut(s) 150, 441
DpnI GATC 4 cut(s) 221, 351, 410, 548
DpnII GATC 4 cut(s) 219, 349, 408, 546
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 200
Eco47III AGCGCT 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 196, 374, 390
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 5 cut(s) 29, 69, 194, 207, 478
FatI CATG 5 cut(s) 25, 65, 190, 203, 474
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 60, 287
FokI GGATG 5 cut(s) 24, 86, 98, 173, 342
Fsp4HI GCNGC 2 cut(s) 60, 287
FspI TGCGCA 1 cut(s) 463
GlaI GCGC 2 cut(s) 463, 487
GluI GCNGC 2 cut(s) 60, 287
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 156
HhaI GCGC 2 cut(s) 464, 488
Hin1II CATG 5 cut(s) 29, 69, 194, 207, 478
Hin6I GCGC 2 cut(s) 462, 486
HinP1I GCGC 2 cut(s) 462, 486
HinfI GANTC 2 cut(s) 251, 536
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 64, 175
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 408, 546
Hpy188III TCNNGA 2 cut(s) 230, 359
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 3 cut(s) 245, 259, 382
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 80, 286, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 539
HpyF3I CTNAG 2 cut(s) 150, 441
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 5 cut(s) 29, 69, 194, 207, 478
HspAI GCGC 2 cut(s) 462, 486
Kzo9I GATC 4 cut(s) 219, 349, 408, 546
LmnI GCTCC 2 cut(s) 46, 199
Lsp1109I GCAGC 2 cut(s) 46, 298
LweI GCATC 3 cut(s) 46, 108, 364
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 221, 351, 410, 548
MbiI CCGCTC 2 cut(s) 49, 542
MboI GATC 4 cut(s) 219, 349, 408, 546
MboII GAAGA 1 cut(s) 507
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 470
MluI ACGCGT 1 cut(s) 173
MnlI CCTC 6 cut(s) 63, 325, 330, 442, 493, 504
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 4 cut(s) 157, 198, 376, 392
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 3 cut(s) 198, 376, 392
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 437, 539
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 203
NdeII GATC 4 cut(s) 219, 349, 408, 546
NlaIII CATG 5 cut(s) 29, 69, 194, 207, 478
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 463
NspI RCATGY 1 cut(s) 29
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 251, 536
PkrI GCNGC 2 cut(s) 61, 288
PshAI GACNNNNGTC 1 cut(s) 237
Psp6I CCWGG 3 cut(s) 196, 374, 390
PspGI CCWGG 3 cut(s) 196, 374, 390
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 546
RseI CAYNNNNRTG 1 cut(s) 326
SatI GCNGC 2 cut(s) 60, 287
Sau3AI GATC 4 cut(s) 219, 349, 408, 546
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 157, 198, 376, 392
SduI GDGCHC 1 cut(s) 181
SetI ASST 5 cut(s) 131, 280, 291, 450, 504
SfaNI GCATC 3 cut(s) 46, 108, 364
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 1 cut(s) 470
SsiI CCGC 3 cut(s) 49, 353, 540
StyD4I CCNGG 4 cut(s) 155, 196, 374, 390
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 245, 259, 382
TaiI ACGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 123, 144
TasI AATT 1 cut(s) 470
TfiI GAWTC 2 cut(s) 251, 536
TscAI CASTG 2 cut(s) 154, 248
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 59, 286
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 54, 310, 463
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 154, 248
VpaK11BI GGWCC 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 133
XapI RAATTY 1 cut(s) 470
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.