Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011196

Physical Location & Seq

Genomic Coordinates Forward (+)

1878951 .. 1881877

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G023200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGAAAGCATACACGCAAGAGTACACATACAAGCACCCATGGGAGAGGGTGACTTCTGCATCTTGGAAAAAATTTGCTGATCCTGAAAACAAACGCACTTTGTCACATATCCTTGAAGTTGACACTCTGAACCACAAGCTTGATCCTAGTACTGGAAAGCTTTACACCACACGTGCAATCACTGTCCATTCCCCCGGACCATGGTTTGTTCGCAAAATTGTTCGCCAGGATGTCTGCCACTGTGTTGAATCAACGGTTGTGGATGCGAAAACACGATCAATGCAACTCACCACCAACAATATCAGCCTTGAAAAGTTTATAGAGGTGGAGGAGAAGATCAGGTATGATCCCCACCCAGAAAACCCAGATGGGTGGACAATCTGCCGACAGGAGACTAGTATCCGAATCAAACCATTATCCGCATTGGCATCTATGGCAGAAAAGGTTGAACAACGCTGTGCTGAGAGGTTTGTACAGAATAGTGCAAAGGGTAGAGAGGTTATGGAGAGGATATGCAAGTATCTTGAAGCTGAATCTAAAGGGCTTGCTAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRELI

Protein Analysis

187

Amino Acids

21.53

Weight (kDa)

8.93

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13070
fragaria_vesca	FvH4_3g43090
malus_domestica	MD03G1024000.v1.1 MD11G1028900.v1.1
prunus_persica	Prupe.6G023200_v2.0.a1 Prupe.6G023200_v2.0.a1 Prupe.6G023200_v2.0.a1
pyrus_communis	pycom03g02070 pycom11g02240
rosa_chinensis	RchiOBHm_Chr5g0077191
rosa_laevigata	RLG00000036672
rosa_multiflora	Rmu_sc0004844.1_g000002 Rmu_sc0006334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004890
rosa_samantha	Rh5AG507500 Rh5BG528900 Rh5CG553300 Rh5DG541000 Rh5DG541200
rosa_wichuraiana	Rw5G046980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	3 cut(s)	77, 140, 344
AcsI	RAATTY	1 cut(s)	74
AcvI	CACGTG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	26, 154, 477
AfiI	CCNNNNNNNGG	2 cut(s)	155, 204
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	119, 251, 314, 452, 530
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	142, 163, 533
AluI	AGCT	3 cut(s)	142, 163, 533
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	77, 140, 344
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	16, 64, 283
AvaII	GGWCC	1 cut(s)	200
BbrPI	CACGTG	1 cut(s)	176
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	150, 399, 552
BfuI	GTATCC	1 cut(s)	413
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	198, 230
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	198, 230
BmsI	GCATC	3 cut(s)	71, 256, 440
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	41, 196, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 204
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	41, 196, 203
BseGI	GGATG	2 cut(s)	238, 271
BseLI	CCNNNNNNNGG	2 cut(s)	155, 204
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	155, 204
BsmAI	GTCTC	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
Bsp19I	CCATGG	2 cut(s)	41, 203
BspACI	CCGC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	457
BspPI	GGATC	3 cut(s)	77, 140, 344
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	41, 196, 203
BssMI	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
BssT1I	CCWWGG	2 cut(s)	41, 203
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	187, 245, 259
BstAUI	TGTACA	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	41, 203
BstF5I	GGATG	2 cut(s)	238, 271
BstKTI	GATC	6 cut(s)	85, 148, 281, 342, 352, 557
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	196, 228
BstXI	CCANNNNNNTGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	413
BtgI	CCRYGG	2 cut(s)	41, 203
BtsCI	GGATG	2 cut(s)	238, 271
BtsIMutI	CAGTG	2 cut(s)	183, 241
Cac8I	GCNNGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	25, 153, 476
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	2 cut(s)	42, 204
CviJI	RGCY	5 cut(s)	142, 163, 309, 533, 547
CviKI_1	RGCY	5 cut(s)	142, 163, 309, 533, 547
CviQI	GTAC	3 cut(s)	25, 153, 476
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	6 cut(s)	84, 147, 280, 341, 351, 556
DpnII	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
Eco130I	CCWWGG	2 cut(s)	41, 203
Eco47I	GGWCC	1 cut(s)	200
Eco72I	CACGTG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	41, 203
ErhI	CCWWGG	2 cut(s)	41, 203
FaeI	CATG	2 cut(s)	45, 207
FatI	CATG	2 cut(s)	41, 203
FokI	GGATG	2 cut(s)	245, 278
FspBI	CTAG	3 cut(s)	150, 399, 552
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	2 cut(s)	45, 207
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	140, 161
HinfI	GANTC	3 cut(s)	251, 408, 536
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	3 cut(s)	16, 64, 283
Hpy166II	GTNNAC	3 cut(s)	27, 124, 378
Hpy188I	TCNGA	2 cut(s)	132, 407
Hpy188III	TCNNGA	2 cut(s)	86, 527
Hpy8I	GTNNAC	3 cut(s)	27, 124, 378
HpyCH4III	ACNGT	3 cut(s)	187, 245, 259
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	5 cut(s)	62, 179, 286, 488, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	45, 207
Kzo9I	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
LpnPI	CCDG	9 cut(s)	99, 141, 211, 215, 242, 328, 372, 377, 381
LweI	GCATC	3 cut(s)	71, 256, 440
MaeI	CTAG	3 cut(s)	150, 399, 552
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	52, 105
MalI	GATC	6 cut(s)	84, 147, 280, 341, 351, 556
MboI	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
MboII	GAAGA	1 cut(s)	349
MluCI	AATT	2 cut(s)	74, 219
MnlI	CCTC	6 cut(s)	42, 319, 325, 462, 493, 504
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	198, 230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	2 cut(s)	41, 203
NdeII	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
NlaIII	CATG	2 cut(s)	45, 207
NmuCI	GTSAC	2 cut(s)	52, 105
PfeI	GAWTC	3 cut(s)	251, 408, 536
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	3 cut(s)	26, 154, 477
RsaNI	GTAC	3 cut(s)	25, 153, 476
Sau3AI	GATC	6 cut(s)	82, 145, 278, 339, 349, 554
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	198, 230
SetI	ASST	9 cut(s)	144, 165, 178, 330, 347, 450, 473, 504, 535
SfaNI	GCATC	3 cut(s)	71, 256, 440
SinI	GGWCC	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	2 cut(s)	74, 219
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	3 cut(s)	150, 399, 552
StyD4I	CCNGG	2 cut(s)	196, 228
StyI	CCWWGG	2 cut(s)	41, 203
TaaI	ACNGT	3 cut(s)	187, 245, 259
TaiI	ACGT	1 cut(s)	178
TasI	AATT	2 cut(s)	74, 219
TatI	WGTACW	3 cut(s)	24, 152, 475
TfiI	GAWTC	3 cut(s)	251, 408, 536
TscAI	CASTG	2 cut(s)	190, 248
TseFI	GTSAC	2 cut(s)	52, 105
Tsp45I	GTSAC	2 cut(s)	52, 105
TspRI	CASTG	2 cut(s)	190, 248
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	3 cut(s)	150, 399, 552
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.