Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004844.1

Orthogroup ID

OG0011196

Physical Location & Seq

Genomic Coordinates Forward (+)

4602 .. 5159

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004844.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggtgaaagcttatgcccaggagtacacatacaagcacccatgggagcgggtgacatctgcatcttggaaaaaatttgctgaccctgaaaataaacgcacattgtctcatatccttgaagttgacactctcaaccacaagctggatcctagttctggaaagctttacaccacgcgtgctatcactgtcaatgccccaggaccatggtttattcgcagaattattcgacaggatgtctgtcattgtgttgaatcaacagttgtggatgcaaaagcacgatcaatgcaactcagcacccacaatatcagtctggaaaagttcattgaggtggaggagaagatcagatatgatcctcacccagacaatcctaaagggtggacaatctgccgacaagagactagtattcggatcaagccattatcagcattggcatcaatggcagaaaaggttgagcagaagtgtgctgagaagtttgtgcagaacagtgccaagggtagggaggttatggagagaatatgcaagtatcttgaagcagaatcgagggggatatctgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRELI

Protein Analysis

185

Amino Acids

21.29

Weight (kDa)

9.05

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13070
fragaria_vesca	FvH4_3g43090
malus_domestica	MD03G1024000.v1.1 MD11G1028900.v1.1
prunus_persica	Prupe.6G023200_v2.0.a1 Prupe.6G023200_v2.0.a1 Prupe.6G023200_v2.0.a1
pyrus_communis	pycom03g02070 pycom11g02240
rosa_chinensis	RchiOBHm_Chr5g0077191
rosa_laevigata	RLG00000036672
rosa_multiflora	Rmu_sc0004844.1_g000002 Rmu_sc0006334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004890
rosa_samantha	Rh5AG507500 Rh5BG528900 Rh5CG553300 Rh5DG541000 Rh5DG541200
rosa_wichuraiana	Rw5G046980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	4 cut(s)	140, 153, 344, 416
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	142, 155, 495
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	119, 251, 530
AhdI	GACNNNNNGTC	1 cut(s)	233
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	18, 196
AluBI	AGCT	3 cut(s)	11, 142, 163
AluI	AGCT	3 cut(s)	11, 142, 163
Alw26I	GTCTC	2 cut(s)	111, 389
AlwI	GGATC	4 cut(s)	140, 153, 344, 416
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	16, 64, 347
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	20, 198
BcoDI	GTCTC	2 cut(s)	111, 389
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	150, 399
Bme1390I	CCNGG	2 cut(s)	20, 198
Bme18I	GGWCC	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	20, 198
BmsI	GCATC	3 cut(s)	71, 256, 440
BsaJI	CCNNGG	5 cut(s)	18, 41, 196, 203, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 155, 495
BseBI	CCWGG	2 cut(s)	20, 198
BseDI	CCNNGG	5 cut(s)	18, 41, 196, 203, 489
BseGI	GGATG	2 cut(s)	238, 271
BseLI	CCNNNNNNNGG	3 cut(s)	142, 155, 495
BseMII	CTCAG	2 cut(s)	304, 456
BseRI	GAGGAG	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	142, 155, 495
BsmAI	GTCTC	2 cut(s)	111, 389
Bsp143I	GATC	5 cut(s)	145, 278, 339, 349, 408
Bsp19I	CCATGG	2 cut(s)	41, 203
BspACI	CCGC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	303, 457
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	140, 153, 344, 416
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	18, 41, 196, 203, 489
BssMI	GATC	5 cut(s)	145, 278, 339, 349, 408
BssT1I	CCWWGG	3 cut(s)	41, 203, 489
Bst2UI	CCWGG	2 cut(s)	20, 198
Bst4CI	ACNGT	3 cut(s)	187, 259, 485
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	290, 465
BstDSI	CCRYGG	2 cut(s)	41, 203
BstF5I	GGATG	2 cut(s)	238, 271
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	148, 281, 342, 352, 411
BstMAI	GTCTC	2 cut(s)	111, 389
BstMBI	GATC	5 cut(s)	145, 278, 339, 349, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	2 cut(s)	20, 198
BstSCI	CCNGG	2 cut(s)	18, 196
BstUI	CGCG	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	145
BtgI	CCRYGG	2 cut(s)	41, 203
BtsCI	GGATG	2 cut(s)	238, 271
BtsIMutI	CAGTG	2 cut(s)	183, 490
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	2 cut(s)	42, 204
CviJI	RGCY	4 cut(s)	11, 142, 163, 415
CviKI_1	RGCY	4 cut(s)	11, 142, 163, 415
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	290, 465
DpnI	GATC	5 cut(s)	147, 280, 341, 351, 410
DpnII	GATC	5 cut(s)	145, 278, 339, 349, 408
DriI	GACNNNNNGTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	233
Eco130I	CCWWGG	3 cut(s)	41, 203, 489
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	18, 196
EcoRV	GATATC	1 cut(s)	549
EcoT14I	CCWWGG	3 cut(s)	41, 203, 489
ErhI	CCWWGG	3 cut(s)	41, 203, 489
FaeI	CATG	2 cut(s)	45, 207
FaiI	YATR	8 cut(s)	15, 31, 43, 111, 205, 348, 506, 517
FatI	CATG	2 cut(s)	41, 203
FauI	CCCGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	245, 278
FspBI	CTAG	2 cut(s)	150, 399
Hin1II	CATG	2 cut(s)	45, 207
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	9, 161
HinfI	GANTC	2 cut(s)	251, 536
HphI	GGTGA	3 cut(s)	16, 64, 347
Hpy166II	GTNNAC	3 cut(s)	27, 124, 378
Hpy188I	TCNGA	2 cut(s)	344, 408
Hpy188III	TCNNGA	3 cut(s)	156, 311, 527
Hpy8I	GTNNAC	3 cut(s)	27, 124, 378
HpyCH4III	ACNGT	3 cut(s)	187, 259, 485
HpyCH4V	TGCA	5 cut(s)	62, 269, 286, 478, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	290, 465
Hsp92II	CATG	2 cut(s)	45, 207
Kzo9I	GATC	5 cut(s)	145, 278, 339, 349, 408
LmnI	GCTCC	1 cut(s)	46
LweI	GCATC	3 cut(s)	71, 256, 440
MaeI	CTAG	2 cut(s)	150, 399
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	5 cut(s)	147, 280, 341, 351, 410
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	5 cut(s)	145, 278, 339, 349, 408
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	2 cut(s)	74, 219
MluI	ACGCGT	1 cut(s)	173
MnlI	CCTC	5 cut(s)	319, 325, 363, 493, 534
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	20, 198
MvaI	CCWGG	2 cut(s)	20, 198
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	437
NcoI	CCATGG	2 cut(s)	41, 203
NdeII	GATC	5 cut(s)	145, 278, 339, 349, 408
NlaIII	CATG	2 cut(s)	45, 207
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	251, 536
PflMI	CCANNNNNTGG	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	18, 196
PspGI	CCWGG	2 cut(s)	18, 196
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	326
Sau3AI	GATC	5 cut(s)	145, 278, 339, 349, 408
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	20, 198
SetI	ASST	6 cut(s)	13, 144, 165, 330, 450, 504
SfaNI	GCATC	3 cut(s)	71, 256, 440
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	326
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	2 cut(s)	74, 219
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	150, 399
StyD4I	CCNGG	2 cut(s)	18, 196
StyI	CCWWGG	3 cut(s)	41, 203, 489
TaaI	ACNGT	3 cut(s)	187, 259, 485
TaqI	TCGA	2 cut(s)	226, 539
TasI	AATT	2 cut(s)	74, 219
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	251, 536
TscAI	CASTG	2 cut(s)	190, 490
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	190, 490
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	2 cut(s)	150, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.