MD11G1028900.v1.1

Protein slowmo homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011196
Physical Location & Seq
Forward (+)
2550997 .. 2553754
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1028900.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGTGAGGGCATACACACAAGAATACACATACAAGCACCCATGGGAGCGGGTGACTTCTGCATCGTGGAAAAAATTTGCTGATGCTGAAAACAAACGCACACTATCACATATCCTTGAAGTTGACACGCTGAACCACAAGCTTGATCCCAGCACAGGAAAGCTTTACACCACACGTGTTATCACTGTCCATGCGCCAGGACCATGGTTTGTCCGCAAAATTGTTCGCCAGGATGTCTGCCACTGCGTTGAGTCAACAGTTGTGGATGCGCAAGCACGATCAATGCAACTCGCCACCAATAATATTAGCCTCGAAAAGTTTATAGAGGTGGAGGAGAAGATCAGGTATGATCCCCACCCTGAGAACCCAAATGGCTGGACATTATGCCGACAGGAGACTAGCATTCGAATCAAGCCTTTATCAGCATTGGCATCAATGGCAGAAAAGGTTGAACAACGCTGCGCTGAGAAGTTTGTGCAGAACAGTGCCAAGGGTAGAGAGGTTATGGAGAAGATATGCAAGTATCTTGAAGCTGAATCTAAAGGGATTTCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRELI

Protein Analysis

186

Amino Acids

21.34

Weight (kDa)

8.76

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRELI PF04707 16 - 178 2.8e-47 PRELI-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 2 cut(s) 49, 214
AclWI GGATC 2 cut(s) 140, 344
AcsI RAATTY 1 cut(s) 74
AcvI CACGTG 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 2 cut(s) 173, 175
AgsI TTSAA 3 cut(s) 119, 452, 530
AjnI CCWGG 2 cut(s) 196, 228
AluBI AGCT 3 cut(s) 142, 163, 533
AluI AGCT 3 cut(s) 142, 163, 533
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 140, 344
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 3 cut(s) 196, 271, 464
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 16, 64
AsuII TTCGAA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 176
BbvI GCAGC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 198, 230
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 198, 230
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 198, 230
BmsI GCATC 4 cut(s) 71, 73, 256, 440
Bpu14I TTCGAA 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 41, 203, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 198, 230
BseDI CCNNGG 3 cut(s) 41, 203, 489
BseGI GGATG 2 cut(s) 238, 271
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 351, 456
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 446
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 406
Bsp143I GATC 4 cut(s) 145, 278, 339, 349
Bsp19I CCATGG 2 cut(s) 41, 203
BspACI CCGC 2 cut(s) 49, 214
BspCNI CTCAG 2 cut(s) 352, 457
BspPI GGATC 2 cut(s) 140, 344
BspT104I TTCGAA 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 41, 203, 489
BssMI GATC 4 cut(s) 145, 278, 339, 349
BssT1I CCWWGG 3 cut(s) 41, 203, 489
Bst2UI CCWGG 2 cut(s) 198, 230
Bst4CI ACNGT 3 cut(s) 187, 259, 485
BstBAI YACGTR 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 360, 465
BstDSI CCRYGG 2 cut(s) 41, 203
BstF5I GGATG 2 cut(s) 238, 271
BstHHI GCGC 3 cut(s) 196, 271, 464
BstKTI GATC 4 cut(s) 148, 281, 342, 352
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 145, 278, 339, 349
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 2 cut(s) 198, 230
BstSCI CCNGG 2 cut(s) 196, 228
BstV1I GCAGC 1 cut(s) 446
BstXI CCANNNNNNTGG 2 cut(s) 204, 375
BtgI CCRYGG 2 cut(s) 41, 203
BtsCI GGATG 2 cut(s) 238, 271
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 3 cut(s) 183, 241, 490
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 3 cut(s) 196, 271, 464
Cfr13I GGNCC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 42, 191, 204
CviJI RGCY 6 cut(s) 142, 163, 309, 375, 415, 533
CviKI_1 RGCY 6 cut(s) 142, 163, 309, 375, 415, 533
DdeI CTNAG 2 cut(s) 360, 465
DpnI GATC 4 cut(s) 147, 280, 341, 351
DpnII GATC 4 cut(s) 145, 278, 339, 349
Eco130I CCWWGG 3 cut(s) 41, 203, 489
Eco47I GGWCC 1 cut(s) 200
Eco72I CACGTG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 196, 228
EcoT14I CCWWGG 3 cut(s) 41, 203, 489
ErhI CCWWGG 3 cut(s) 41, 203, 489
FaeI CATG 3 cut(s) 45, 194, 207
FatI CATG 3 cut(s) 41, 190, 203
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 2 cut(s) 245, 278
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 1 cut(s) 399
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 3 cut(s) 195, 270, 463
GluI GCNGC 1 cut(s) 460
GsaI CCCAGC 1 cut(s) 153
HhaI GCGC 3 cut(s) 196, 271, 464
Hin1II CATG 3 cut(s) 45, 194, 207
Hin6I GCGC 3 cut(s) 194, 269, 462
HinP1I GCGC 3 cut(s) 194, 269, 462
HincII GTYRAC 2 cut(s) 124, 255
HindII GTYRAC 2 cut(s) 124, 255
HindIII AAGCTT 2 cut(s) 140, 161
HinfI GANTC 3 cut(s) 251, 408, 536
HphI GGTGA 2 cut(s) 16, 64
Hpy166II GTNNAC 2 cut(s) 124, 255
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 2 cut(s) 124, 255
HpyCH4III ACNGT 3 cut(s) 187, 259, 485
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 62, 286, 478, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 360, 465
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 45, 194, 207
HspAI GCGC 3 cut(s) 194, 269, 462
Kzo9I GATC 4 cut(s) 145, 278, 339, 349
LmnI GCTCC 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 4 cut(s) 71, 73, 256, 440
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 52
MalI GATC 4 cut(s) 147, 280, 341, 351
MbiI CCGCTC 1 cut(s) 49
MboI GATC 4 cut(s) 145, 278, 339, 349
MboII GAAGA 2 cut(s) 349, 523
MluCI AATT 2 cut(s) 74, 219
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 4 cut(s) 319, 320, 325, 493
MspR9I CCNGG 2 cut(s) 198, 230
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 2 cut(s) 198, 230
MwoI GCNNNNNNNGC 1 cut(s) 437
NcoI CCATGG 2 cut(s) 41, 203
NdeII GATC 4 cut(s) 145, 278, 339, 349
NlaIII CATG 3 cut(s) 45, 194, 207
NmuCI GTSAC 1 cut(s) 52
NsbI TGCGCA 1 cut(s) 270
NspV TTCGAA 1 cut(s) 406
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 408, 536
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 1 cut(s) 259
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 196, 228
PspCI CACGTG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 196, 228
PspPI GGNCC 1 cut(s) 200
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 4 cut(s) 145, 278, 339, 349
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 198, 230
SetI ASST 8 cut(s) 144, 165, 178, 330, 347, 450, 504, 535
SfaNI GCATC 4 cut(s) 71, 73, 256, 440
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 1 cut(s) 200
Sse9I AATT 2 cut(s) 74, 219
SsiI CCGC 2 cut(s) 49, 214
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 196, 228
StyI CCWWGG 3 cut(s) 41, 203, 489
TaaI ACNGT 3 cut(s) 187, 259, 485
TaiI ACGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 312, 406
TasI AATT 2 cut(s) 74, 219
TfiI GAWTC 2 cut(s) 408, 536
TscAI CASTG 3 cut(s) 190, 248, 490
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 3 cut(s) 190, 248, 490
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 74
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.