FvH4_3g43090

Protein slowmo homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011196
Physical Location & Seq
Reverse (-)
35988222 .. 35990779
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43090.t1

Sequence Viewer

Length: 558 bp
ATGGTGAAAGCATATGCCCAAGAGTACACATACAAGCACCCATGGGAGCGGGTAACTTCAGCATCATGGAAAAAATTTGCTGACCCTGAAAATAAACGCACATTGTCTCATATCCTTGAAGTCGACACTCTCAACCACAAGCTGGATCCTAGTTCTGGAAAGCTTTACACCACGCGTGCTATCACTGTCAATACCCCAGGACCATGGTTCATTCGCAGAATTGTTCGCCAGGATGTATGCCATTGTGTTGAATCAACAGTTGTGGATGCAAAAGCGCGATCAATGCAACTCAGCACCCACAATATCAGTCTTGAAAAGTTCATTGAGGTGGATGAGAAGATCAGATATGATCCTCACCCAGCAAATCCTGATGAATGGACAATCTGCCGCCAAGAGACTAGTATCCGGATCAAGCCATTATCAGCATTGGCGTCAATGGCAGAAAAGGTTGAGCAAAAGTGTGCTGAAAAGTTTGTGCAGAACAGTGCCAAGGGTAGGGAGGTTATGGAGAGAATATGCAAGTATCTTGAAGCAGAATCGAGGGGGATGTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRELI

Protein Analysis

186

Amino Acids

21.33

Weight (kDa)

8.76

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRELI PF04707 16 - 178 7.7e-48 PRELI-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 123
AccII CGCG 2 cut(s) 175, 277
AccIII TCCGGA 1 cut(s) 405
AciI CCGC 2 cut(s) 49, 388
AclWI GGATC 4 cut(s) 140, 153, 344, 416
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 3 cut(s) 142, 155, 495
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 4 cut(s) 119, 251, 314, 530
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 196, 228
AluBI AGCT 2 cut(s) 142, 163
AluI AGCT 2 cut(s) 142, 163
Alw26I GTCTC 2 cut(s) 111, 389
AlwI GGATC 4 cut(s) 140, 153, 344, 416
Aor13HI TCCGGA 1 cut(s) 405
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 16, 347
AvaII GGWCC 1 cut(s) 200
BamHI GGATCC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 198, 230
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 111, 389
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 2 cut(s) 150, 399
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 388
BlsI GCNGC 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 198, 230
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 198, 230
BmsI GCATC 2 cut(s) 71, 256
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 41, 196, 203, 489
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 155, 495
BseAI TCCGGA 1 cut(s) 405
BseBI CCWGG 2 cut(s) 198, 230
BseDI CCNNGG 4 cut(s) 41, 196, 203, 489
BseGI GGATG 4 cut(s) 238, 271, 337, 552
BseLI CCNNNNNNNGG 3 cut(s) 142, 155, 495
BseMII CTCAG 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 175, 277
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 142, 155, 495
BsmAI GTCTC 2 cut(s) 111, 389
Bsp13I TCCGGA 1 cut(s) 405
Bsp143I GATC 5 cut(s) 145, 278, 339, 349, 408
Bsp19I CCATGG 2 cut(s) 41, 203
BspACI CCGC 2 cut(s) 49, 388
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 405
BspFNI CGCG 2 cut(s) 175, 277
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 4 cut(s) 140, 153, 344, 416
BsrBI CCGCTC 1 cut(s) 49
BssECI CCNNGG 4 cut(s) 41, 196, 203, 489
BssMI GATC 5 cut(s) 145, 278, 339, 349, 408
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 3 cut(s) 41, 203, 489
Bst2UI CCWGG 2 cut(s) 198, 230
Bst4CI ACNGT 3 cut(s) 187, 259, 485
BstACI GRCGYC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 2 cut(s) 41, 203
BstF5I GGATG 4 cut(s) 238, 271, 337, 552
BstFNI CGCG 2 cut(s) 175, 277
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 5 cut(s) 148, 281, 342, 352, 411
BstMAI GTCTC 2 cut(s) 111, 389
BstMBI GATC 5 cut(s) 145, 278, 339, 349, 408
BstMWI GCNNNNNNNGC 2 cut(s) 283, 437
BstNI CCWGG 2 cut(s) 198, 230
BstSCI CCNGG 2 cut(s) 196, 228
BstUI CGCG 2 cut(s) 175, 277
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 413
BtgI CCRYGG 2 cut(s) 41, 203
BtsCI GGATG 4 cut(s) 238, 271, 337, 552
BtsIMutI CAGTG 2 cut(s) 183, 490
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 42, 66, 204
CviJI RGCY 3 cut(s) 142, 163, 415
CviKI_1 RGCY 3 cut(s) 142, 163, 415
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 290
DpnI GATC 5 cut(s) 147, 280, 341, 351, 410
DpnII GATC 5 cut(s) 145, 278, 339, 349, 408
Eco130I CCWWGG 3 cut(s) 41, 203, 489
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 196, 228
EcoT14I CCWWGG 3 cut(s) 41, 203, 489
ErhI CCWWGG 3 cut(s) 41, 203, 489
FaeI CATG 3 cut(s) 45, 69, 207
FatI CATG 3 cut(s) 41, 65, 203
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 388
FokI GGATG 3 cut(s) 245, 278, 344
Fsp4HI GCNGC 1 cut(s) 388
FspBI CTAG 2 cut(s) 150, 399
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 388
GsaI CCCAGC 1 cut(s) 362
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 3 cut(s) 45, 69, 207
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 251, 536
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 16, 347
Hpy166II GTNNAC 2 cut(s) 27, 124
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 5 cut(s) 156, 311, 368, 406, 527
Hpy8I GTNNAC 2 cut(s) 27, 124
HpyCH4III ACNGT 3 cut(s) 187, 259, 485
HpyCH4V TGCA 4 cut(s) 269, 286, 478, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 437
HpyF3I CTNAG 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 3 cut(s) 45, 69, 207
HspAI GCGC 1 cut(s) 275
Kpn2I TCCGGA 1 cut(s) 405
Kzo9I GATC 5 cut(s) 145, 278, 339, 349, 408
LmnI GCTCC 1 cut(s) 46
LweI GCATC 2 cut(s) 71, 256
MaeI CTAG 2 cut(s) 150, 399
MaeIII GTNAC 1 cut(s) 52
MalI GATC 5 cut(s) 147, 280, 341, 351, 410
MbiI CCGCTC 1 cut(s) 49
MboI GATC 5 cut(s) 145, 278, 339, 349, 408
MboII GAAGA 1 cut(s) 349
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 74, 219
MluI ACGCGT 1 cut(s) 173
MnlI CCTC 4 cut(s) 319, 363, 493, 534
MroI TCCGGA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 2 cut(s) 198, 230
MvaI CCWGG 2 cut(s) 198, 230
MvnI CGCG 2 cut(s) 175, 277
MwoI GCNNNNNNNGC 2 cut(s) 283, 437
NcoI CCATGG 2 cut(s) 41, 203
NdeI CATATG 1 cut(s) 13
NdeII GATC 5 cut(s) 145, 278, 339, 349, 408
NlaIII CATG 3 cut(s) 45, 69, 207
NlaIV GGNNCC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 251, 536
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 196, 228
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 196, 228
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 122
SatI GCNGC 1 cut(s) 388
Sau3AI GATC 5 cut(s) 145, 278, 339, 349, 408
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 198, 230
SetI ASST 5 cut(s) 144, 165, 330, 450, 504
SfaNI GCATC 2 cut(s) 71, 256
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 2 cut(s) 74, 219
SsiI CCGC 2 cut(s) 49, 388
SspMI CTAG 2 cut(s) 150, 399
StyD4I CCNGG 2 cut(s) 196, 228
StyI CCWWGG 3 cut(s) 41, 203, 489
TaaI ACNGT 3 cut(s) 187, 259, 485
TaqI TCGA 2 cut(s) 123, 539
TasI AATT 2 cut(s) 74, 219
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 2 cut(s) 251, 536
TscAI CASTG 2 cut(s) 190, 490
TspDTI ATGAA 3 cut(s) 199, 310, 387
TspRI CASTG 2 cut(s) 190, 490
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 150, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.