Rw5G046980

Protein slowmo homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011196
Physical Location & Seq
Forward (+)
81407274 .. 81409617
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046980.1

Sequence Viewer

Length: 558 bp
ATGGTGAAAGCTTATGCCCAGGAGTACACATACAAGCACCCATGGGAGCGGGTGACATCTGCATCTTGGAAAAAATTTGCTGACCCTGAAAATAAACGCACATTGTCTCATATCCTTGAAGTTGACACTCTCAACCACAAGCTGGATCCTAGTTCTGGAAAGCTTTACACCACGCGTGCTATCACTGTCAATGCCCCAGGACCATGGTTTATTCGCAGAATTATTCGACAGGATGTCTGTCATTGTGTTGAATCAACAGTTGTGGATGCAAAAGCACGATCAATGCAACTCAGCACCCACAATATCAGTCTGGAAAAGTTCATTGAGGTGGAGGAGAAGATCAGATATGATCCTCACCCAGACAATCCTAAAGGGTGGACAATCTGCCGACAAGAGACTAGTATTCGGATCAAGCCATTATCAGCATTGGCATCAATGGCAGAAAAGGTTGAGCAGAAGTGTGCTGAGAAGTTTGTGCAGAACAGTGCCAAGGGTAGGGAGGTTATGGAGAGAATATGCAAGTATCTTGAAGCAGAATCGAGGGGGATATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRELI

Protein Analysis

185

Amino Acids

21.29

Weight (kDa)

9.05

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRELI PF04707 16 - 178 2.4e-48 PRELI-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 49
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 49
AclWI GGATC 4 cut(s) 140, 153, 344, 416
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 3 cut(s) 142, 155, 495
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 3 cut(s) 119, 251, 530
AhdI GACNNNNNGTC 1 cut(s) 233
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 18, 196
AluBI AGCT 3 cut(s) 11, 142, 163
AluI AGCT 3 cut(s) 11, 142, 163
Alw26I GTCTC 2 cut(s) 111, 389
AlwI GGATC 4 cut(s) 140, 153, 344, 416
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 16, 64, 347
AvaII GGWCC 1 cut(s) 200
BamHI GGATCC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 20, 198
BcoDI GTCTC 2 cut(s) 111, 389
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 2 cut(s) 150, 399
Bme1390I CCNGG 2 cut(s) 20, 198
Bme18I GGWCC 1 cut(s) 200
BmeRI GACNNNNNGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 20, 198
BmsI GCATC 3 cut(s) 71, 256, 440
BsaJI CCNNGG 5 cut(s) 18, 41, 196, 203, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 155, 495
BseBI CCWGG 2 cut(s) 20, 198
BseDI CCNNGG 5 cut(s) 18, 41, 196, 203, 489
BseGI GGATG 2 cut(s) 238, 271
BseLI CCNNNNNNNGG 3 cut(s) 142, 155, 495
BseMII CTCAG 2 cut(s) 304, 456
BseRI GAGGAG 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 142, 155, 495
BsmAI GTCTC 2 cut(s) 111, 389
Bsp143I GATC 5 cut(s) 145, 278, 339, 349, 408
Bsp19I CCATGG 2 cut(s) 41, 203
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 303, 457
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 4 cut(s) 140, 153, 344, 416
BsrBI CCGCTC 1 cut(s) 49
BssECI CCNNGG 5 cut(s) 18, 41, 196, 203, 489
BssMI GATC 5 cut(s) 145, 278, 339, 349, 408
BssT1I CCWWGG 3 cut(s) 41, 203, 489
Bst2UI CCWGG 2 cut(s) 20, 198
Bst4CI ACNGT 3 cut(s) 187, 259, 485
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 290, 465
BstDSI CCRYGG 2 cut(s) 41, 203
BstF5I GGATG 2 cut(s) 238, 271
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 5 cut(s) 148, 281, 342, 352, 411
BstMAI GTCTC 2 cut(s) 111, 389
BstMBI GATC 5 cut(s) 145, 278, 339, 349, 408
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 2 cut(s) 20, 198
BstSCI CCNGG 2 cut(s) 18, 196
BstUI CGCG 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 145
BtgI CCRYGG 2 cut(s) 41, 203
BtsCI GGATG 2 cut(s) 238, 271
BtsIMutI CAGTG 2 cut(s) 183, 490
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 2 cut(s) 42, 204
CviJI RGCY 4 cut(s) 11, 142, 163, 415
CviKI_1 RGCY 4 cut(s) 11, 142, 163, 415
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 290, 465
DpnI GATC 5 cut(s) 147, 280, 341, 351, 410
DpnII GATC 5 cut(s) 145, 278, 339, 349, 408
DriI GACNNNNNGTC 1 cut(s) 233
Eam1105I GACNNNNNGTC 1 cut(s) 233
Eco130I CCWWGG 3 cut(s) 41, 203, 489
Eco32I GATATC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 18, 196
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 3 cut(s) 41, 203, 489
ErhI CCWWGG 3 cut(s) 41, 203, 489
FaeI CATG 2 cut(s) 45, 207
FaiI YATR 8 cut(s) 15, 31, 43, 111, 205, 348, 506, 517
FatI CATG 2 cut(s) 41, 203
FauI CCCGC 1 cut(s) 42
FokI GGATG 2 cut(s) 245, 278
FspBI CTAG 2 cut(s) 150, 399
Hin1II CATG 2 cut(s) 45, 207
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 9, 161
HinfI GANTC 2 cut(s) 251, 536
HphI GGTGA 3 cut(s) 16, 64, 347
Hpy166II GTNNAC 3 cut(s) 27, 124, 378
Hpy188I TCNGA 2 cut(s) 344, 408
Hpy188III TCNNGA 3 cut(s) 156, 311, 527
Hpy8I GTNNAC 3 cut(s) 27, 124, 378
HpyCH4III ACNGT 3 cut(s) 187, 259, 485
HpyCH4V TGCA 5 cut(s) 62, 269, 286, 478, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 290, 465
Hsp92II CATG 2 cut(s) 45, 207
Kzo9I GATC 5 cut(s) 145, 278, 339, 349, 408
LmnI GCTCC 1 cut(s) 46
LweI GCATC 3 cut(s) 71, 256, 440
MaeI CTAG 2 cut(s) 150, 399
MaeIII GTNAC 1 cut(s) 52
MalI GATC 5 cut(s) 147, 280, 341, 351, 410
MbiI CCGCTC 1 cut(s) 49
MboI GATC 5 cut(s) 145, 278, 339, 349, 408
MboII GAAGA 1 cut(s) 349
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 74, 219
MluI ACGCGT 1 cut(s) 173
MnlI CCTC 5 cut(s) 319, 325, 363, 493, 534
MslI CAYNNNNRTG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 20, 198
MvaI CCWGG 2 cut(s) 20, 198
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 437
NcoI CCATGG 2 cut(s) 41, 203
NdeII GATC 5 cut(s) 145, 278, 339, 349, 408
NlaIII CATG 2 cut(s) 45, 207
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 251, 536
PflMI CCANNNNNTGG 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 18, 196
PspGI CCWGG 2 cut(s) 18, 196
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 326
Sau3AI GATC 5 cut(s) 145, 278, 339, 349, 408
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 20, 198
SetI ASST 6 cut(s) 13, 144, 165, 330, 450, 504
SfaNI GCATC 3 cut(s) 71, 256, 440
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 2 cut(s) 74, 219
SsiI CCGC 1 cut(s) 49
SspMI CTAG 2 cut(s) 150, 399
StyD4I CCNGG 2 cut(s) 18, 196
StyI CCWWGG 3 cut(s) 41, 203, 489
TaaI ACNGT 3 cut(s) 187, 259, 485
TaqI TCGA 2 cut(s) 226, 539
TasI AATT 2 cut(s) 74, 219
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 2 cut(s) 251, 536
TscAI CASTG 2 cut(s) 190, 490
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 2 cut(s) 190, 490
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 74
XspI CTAG 2 cut(s) 150, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.