AT5G13100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014177
Physical Location & Seq
Forward (+)
4156501 .. 4158554
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13100.1

Sequence Viewer

Length: 1065 bp
ATGGGAAAGCTTTTGTGTGATTCAACGGCGACATTTCAATCTCCTTCACCAACGGTTCCTTGGAGAGAACCTTCTACAGTCGCCGTGTCTCTCGAAGATGTAGATCTTGTTGACCAATCCGCGGCTGCTGCGGCGGTGGACGCGGTTGAGAAGACAATGGCCGCCGCAACTACCACCGCTTGGGATGAGGTTTTTGGATTGGAGGAGGCGCAAAGACGGCATCTGAGCCGGCTACACGCGAGAGGTGTGTTGTGGAAACATCCTGGTAAAGATGAATCCTCTGCTTCCGTCGTTTTCCGTCTCTCTCACGGCGGAGAGGTTTCTTCCGACGGGAACTGTTTGTTCACCGCTTCTCAGAAGGCTATGGAGGCGCGTGGGATCGACGCGCGAGATTTACGGCGGCGGACGGTGAGGAGGTTTTTGGAGGATTTCAGATCTGCTAGCGAGGAAGAGAAGGAGGTTATTACGGATGCGATTAGGCATATGTATTCGCCGGATCTGAAGAGTGGTTGGGGGATTCATATTGTCCAGGAAGAGAAGTTGTTGGCGAAAAAAGATGAACGTGAGAGTCTTGATTCCGCCATTGAAGAGCTTTTACAGATTGGGATGCATAGAGAAACTGCTGCAGAGTCAATCTATAGAGAGAGGTGTCTTCCGGTGAATGATGGACTTAGTTGGTCTAAGTACATGTCGATTTCAGGCTCAACAGAGGATGAGTATGATATCATTACCTTGCAGTATACGGAAGATGGGTTGTTATCTGTAGATGAGAACCGAGAAGGACGTGCAGCTGCGTTTGGGGATGACATAGCAATCGAGTGTCTAGCCACTGAGTTCAAACGAGAAATCTATGTGGTGCAAGCGCATGGATCAGATGGGATGGTAGAGGAAGAGAACTGTGTGTTCTTTCTTCCTCACAAACCAAGAAGTGAAGTTCTTGAAGTCCCAGTCTTTCTATTCATGAAAGGCACTGGTTGGTGTGGTGGTGGAGCAGACCATTACGAGCCCTTGATAGCGAATCCATCTCCTCTGATATCTCATGAGAAAGTCGCCCTCGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.3

Weight (kDa)

4.86

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13100
fragaria_vesca FvH4_4g23370 FvH4_4g23370
malus_domestica MD16G1123300.v1.1
prunus_persica Prupe.1G222300_v2.0.a1 Prupe.1G222300_v2.0.a1
pyrus_communis pycom16g10550
rosa_chinensis RchiOBHm_Chr4g0429761
rosa_laevigata RLG00000007045
rosa_multiflora Rmu_sc0001935.1_g000009
rosa_roxburghii Rroxscaffold_5G00371530
rosa_rugosa Rorug04G0237900
rosa_samantha Rh4AG294300 Rh4BG300300 Rh4CG315900 Rh4DG297400
rosa_wichuraiana Rw4G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 180
AccI GTMKAC 1 cut(s) 740
AccII CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
AclWI GGATC 3 cut(s) 386, 504, 877
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 2 cut(s) 121, 180
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 5 cut(s) 24, 38, 587, 838, 941
AjiI CACGTC 1 cut(s) 785
AjnI CCWGG 2 cut(s) 262, 528
AluBI AGCT 3 cut(s) 10, 592, 791
AluI AGCT 3 cut(s) 10, 592, 791
Alw26I GTCTC 2 cut(s) 93, 305
AlwI GGATC 3 cut(s) 386, 504, 877
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 5 cut(s) 125, 128, 623, 788, 791
AspLEI GCGC 4 cut(s) 211, 373, 388, 865
AsuHPI GGTGA 4 cut(s) 39, 337, 421, 670
AsuNHI GCTAGC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 1008
BarI GAAGNNNNNNTAC 2 cut(s) 579, 611
BbsI GAAGAC 2 cut(s) 158, 644
BbvI GCAGC 5 cut(s) 112, 115, 610, 778, 800
BccI CCATC 5 cut(s) 659, 743, 869, 874, 1030
BceAI ACGGC 5 cut(s) 42, 68, 233, 325, 413
BciT130I CCWGG 2 cut(s) 264, 530
BcoDI GTCTC 2 cut(s) 93, 305
BfaI CTAG 2 cut(s) 441, 824
BfmI CTRYAG 4 cut(s) 75, 624, 637, 762
BglII AGATCT 2 cut(s) 103, 434
Bme1390I CCNGG 2 cut(s) 264, 530
BmgBI CACGTC 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 264, 530
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 229, 460, 597
BmtI GCTAGC 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 2 cut(s) 158, 644
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 59, 120
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 180
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 947, 976
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 264, 530
BseDI CCNNGG 2 cut(s) 59, 120
BseGI GGATG 7 cut(s) 190, 259, 475, 612, 718, 808, 885
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 121, 180
BseMII CTCAG 3 cut(s) 215, 368, 822
BseNI ACTGG 2 cut(s) 947, 976
BseRI GAGGAG 3 cut(s) 218, 427, 1017
BseXI GCAGC 5 cut(s) 112, 115, 610, 778, 800
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
BshFI GGCC 1 cut(s) 161
BsiSI CCGG 3 cut(s) 229, 494, 656
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 2 cut(s) 121, 180
BsmAI GTCTC 2 cut(s) 93, 305
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 929
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 1008
Bsp143I GATC 5 cut(s) 103, 378, 434, 496, 869
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 3 cut(s) 216, 367, 823
BspFNI CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
BspHI TCATGA 2 cut(s) 960, 1039
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 628
BspOI GCTAGC 1 cut(s) 444
BspPI GGATC 3 cut(s) 386, 504, 877
BspQI GCTCTTC 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 947, 976
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 59, 120
BssMI GATC 5 cut(s) 103, 378, 434, 496, 869
BssNAI GTATAC 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 264, 530
Bst4CI ACNGT 5 cut(s) 55, 79, 338, 409, 899
Bst6I CTCTTC 5 cut(s) 444, 497, 528, 582, 885
BstC8I GCNNGC 3 cut(s) 230, 442, 861
BstDEI CTNAG 5 cut(s) 224, 354, 671, 681, 831
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 7 cut(s) 190, 259, 475, 612, 718, 808, 885
BstFNI CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
BstHHI GCGC 4 cut(s) 211, 373, 388, 865
BstKTI GATC 5 cut(s) 106, 381, 437, 499, 872
BstMAI GTCTC 2 cut(s) 93, 305
BstMBI GATC 5 cut(s) 103, 378, 434, 496, 869
BstMWI GCNNNNNNNGC 5 cut(s) 128, 131, 140, 217, 368
BstNI CCWGG 2 cut(s) 264, 530
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 262, 528
BstSFI CTRYAG 4 cut(s) 75, 624, 637, 762
BstUI CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
BstV1I GCAGC 5 cut(s) 112, 115, 610, 778, 800
BstV2I GAAGAC 2 cut(s) 158, 644
BstX2I RGATCY 3 cut(s) 103, 434, 496
BstYI RGATCY 3 cut(s) 103, 434, 496
BstZ17I GTATAC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 785
BtsCI GGATG 7 cut(s) 190, 259, 475, 612, 718, 808, 885
BtsIMutI CAGTG 2 cut(s) 828, 969
Cac8I GCNNGC 3 cut(s) 230, 442, 861
CciI TCATGA 2 cut(s) 960, 1039
CfoI GCGC 4 cut(s) 211, 373, 388, 865
Cfr10I RCCGGY 1 cut(s) 228
Cfr42I CCGCGG 1 cut(s) 123
CseI GACGC 2 cut(s) 149, 392
Csp6I GTAC 1 cut(s) 685
CviAII CATG 4 cut(s) 688, 866, 961, 1040
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 5 cut(s) 224, 354, 671, 681, 831
DpnI GATC 5 cut(s) 105, 380, 436, 498, 871
DpnII GATC 5 cut(s) 103, 378, 434, 496, 869
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 5 cut(s) 444, 497, 528, 582, 885
EarI CTCTTC 5 cut(s) 444, 497, 528, 582, 885
EciI GGCGGA 3 cut(s) 327, 418, 568
Eco130I CCWWGG 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 1008
Eco32I GATATC 2 cut(s) 724, 1035
Eco57I CTGAAG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 262, 528
EcoRV GATATC 2 cut(s) 724, 1035
EcoT14I CCWWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 1008
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 4 cut(s) 691, 869, 964, 1043
FaqI GGGAC 1 cut(s) 929
FatI CATG 4 cut(s) 687, 865, 960, 1039
FauNDI CATATG 1 cut(s) 483
FblI GTMKAC 1 cut(s) 740
FokI GGATG 7 cut(s) 197, 246, 482, 619, 725, 815, 892
FriOI GRGCYC 1 cut(s) 1008
FspBI CTAG 2 cut(s) 441, 824
GlaI GCGC 4 cut(s) 210, 372, 387, 864
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 229, 494, 656
HgaI GACGC 2 cut(s) 149, 392
HhaI GCGC 4 cut(s) 211, 373, 388, 865
Hin1II CATG 4 cut(s) 691, 869, 964, 1043
Hin6I GCGC 4 cut(s) 209, 371, 386, 863
HinP1I GCGC 4 cut(s) 209, 371, 386, 863
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 7 cut(s) 20, 275, 517, 568, 575, 629, 1018
HpaII CCGG 3 cut(s) 229, 494, 656
HphI GGTGA 4 cut(s) 39, 337, 421, 670
Hpy166II GTNNAC 4 cut(s) 112, 139, 345, 741
Hpy188I TCNGA 8 cut(s) 225, 328, 357, 434, 501, 874, 1032, 1064
Hpy188III TCNNGA 5 cut(s) 92, 572, 938, 961, 1040
Hpy8I GTNNAC 4 cut(s) 112, 139, 345, 741
Hpy99I CGWCG 3 cut(s) 293, 332, 386
HpyAV CCTTC 5 cut(s) 54, 81, 352, 448, 773
HpyCH4III ACNGT 5 cut(s) 55, 79, 338, 409, 899
HpyCH4IV ACGT 2 cut(s) 562, 784
HpyCH4V TGCA 5 cut(s) 610, 626, 736, 788, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 131, 140, 217, 368
HpyF3I CTNAG 5 cut(s) 224, 354, 671, 681, 831
HpySE526I ACGT 2 cut(s) 562, 784
Hsp92II CATG 4 cut(s) 691, 869, 964, 1043
HspAI GCGC 4 cut(s) 209, 371, 386, 863
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 5 cut(s) 103, 378, 434, 496, 869
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 1 cut(s) 989
Lsp1109I GCAGC 5 cut(s) 112, 115, 610, 778, 800
LweI GCATC 3 cut(s) 229, 460, 597
MaeI CTAG 2 cut(s) 441, 824
MaeII ACGT 2 cut(s) 562, 784
MalI GATC 5 cut(s) 105, 380, 436, 498, 871
MboI GATC 5 cut(s) 103, 378, 434, 496, 869
MflI RGATCY 3 cut(s) 103, 434, 496
MhlI GDGCHC 1 cut(s) 1008
MlyI GAGTC 2 cut(s) 577, 638
MmeI TCCRAC 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 612
MroNI GCCGGC 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 122, 791
MspI CCGG 3 cut(s) 229, 494, 656
MspR9I CCNGG 2 cut(s) 264, 530
MvaI CCWGG 2 cut(s) 264, 530
MvnI CGCG 6 cut(s) 122, 143, 239, 373, 386, 388
MwoI GCNNNNNNNGC 5 cut(s) 128, 131, 140, 217, 368
NaeI GCCGGC 1 cut(s) 230
NdeI CATATG 1 cut(s) 483
NdeII GATC 5 cut(s) 103, 378, 434, 496, 869
NgoMIV GCCGGC 1 cut(s) 228
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 4 cut(s) 691, 869, 964, 1043
NlaIV GGNNCC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 1 cut(s) 691
PagI TCATGA 2 cut(s) 960, 1039
PciI ACATGT 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 582
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 5 cut(s) 20, 275, 517, 575, 1018
PflMI CCANNNNNTGG 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 528
PleI GAGTC 2 cut(s) 576, 637
PpsI GAGTC 2 cut(s) 576, 637
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 262, 528
PspGI CCWGG 2 cut(s) 262, 528
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 3 cut(s) 103, 434, 496
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
SacII CCGCGG 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 582
Sau3AI GATC 5 cut(s) 103, 378, 434, 496, 869
SchI GAGTC 2 cut(s) 577, 638
ScrFI CCNGG 2 cut(s) 264, 530
SduI GDGCHC 1 cut(s) 1008
SfaNI GCATC 3 cut(s) 229, 460, 597
SfcI CTRYAG 4 cut(s) 75, 624, 637, 762
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SspMI CTAG 2 cut(s) 441, 824
StyD4I CCNGG 2 cut(s) 262, 528
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 5 cut(s) 55, 79, 338, 409, 899
TaiI ACGT 2 cut(s) 565, 787
TaqI TCGA 4 cut(s) 93, 381, 692, 816
TatI WGTACW 1 cut(s) 684
TauI GCSGC 5 cut(s) 125, 134, 164, 167, 403
TfiI GAWTC 5 cut(s) 20, 275, 517, 575, 1018
TscAI CASTG 2 cut(s) 835, 976
TseI GCWGC 5 cut(s) 125, 128, 623, 788, 791
TspDTI ATGAA 5 cut(s) 288, 509, 573, 949, 977
TspGWI ACGGA 4 cut(s) 277, 287, 482, 758
TspRI CASTG 2 cut(s) 835, 976
Van91I CCANNNNNTGG 1 cut(s) 180
XceI RCATGY 1 cut(s) 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 740
XspI CTAG 2 cut(s) 441, 824
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.