RchiOBHm_Chr4g0429761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014177
Physical Location & Seq
Reverse (-)
54478141 .. 54481264
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39853

Sequence Viewer

Length: 1056 bp
ATGGGGAAACTACTATGTGATTCCACCACGGTTGCCGAGACATTCCAGACCTCCTCGCCCACCGTCGCCTGGCGGGACCCGCCGGCCAAGTCGGCCCCGCTTCAGGAGGAGGAAGACCTGATCGAGGCCGTCGATCTCGTTGTTGACCAGTCAACGGCCGACGACGCCTGGGGTGCTGTCGTGGGCCTGGAGGAGCAGCAGCGGCGGCATCTCCAGCGGCTTCACGCCAAGGGCGTTCTCTGGAAGCATCCTGAGGCGGAGGACGGCGACTCCTCGGTCGTCTTCAGACTGTCGCACGGCGGAGAGGTGTCGTCCGACGGTAACTGCCTGTTCACGGCGTCGCACAAGGCGATGAAGGCGGCGCGTGAGGTCGACGCGCGGGAGCTGAGGAGGCGGACGGTGCGGAGGTTCTTGGAGGACTATGGATCTGCGAGCGCGGAGGAGAGGAACGTCATAAACGACGTCATTCGGCATCTCTACGCGCCTGATCTGAGGGCCGGGTGGGGGATACACGTCATTCAGGAGGTCAAACTTCTAGCTAAGAAGGACGAGCGCGTGCGTCTGGACTCCGCCATTGAAGAGCTTCTTCAGCTCGGAATGCAGAGGGAGCTGGCGGCAGAGTCTATTTACAAAGAGAGATGTATCTCAGTGAGTGATGGACCGAGTTGGGCCAAATACATGTTGATCTCTGGTTCCCTGGATGATGAATATGATATCATCACGTTGCAATACACGGAGGAAGGCTTATTAACAGTCGATGAAAATAGAGAAGGTCATGCCGCGGCTTTTGGAGATGATATAGCAATCGAGTGTCTTGCAACAGAGTTTAAGCGAGAGATATATGTGGTTCAAGCACATGGATCAGATGCTATGGTCGATGAGGAAAATTGTGTTTTCTTCCTTCCACACCGACCAAGGACTCGGATTTGTGAACCACCCTTCTTTCTTTTCATGAAAGGAACAGGTTGGTGTGGTGCTGGTGCTGATCACTATGAACCCCTGATTGCCCATCCCTTGTCCTTTGTTTCCCAGGAGAAGGTGGCTATGGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.3

Weight (kDa)

4.92

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13100
fragaria_vesca FvH4_4g23370 FvH4_4g23370
malus_domestica MD16G1123300.v1.1
prunus_persica Prupe.1G222300_v2.0.a1 Prupe.1G222300_v2.0.a1
pyrus_communis pycom16g10550
rosa_chinensis RchiOBHm_Chr4g0429761
rosa_laevigata RLG00000007045
rosa_multiflora Rmu_sc0001935.1_g000009
rosa_roxburghii Rroxscaffold_5G00371530
rosa_rugosa Rorug04G0237900
rosa_samantha Rh4AG294300 Rh4BG300300 Rh4CG315900 Rh4DG297400
rosa_wichuraiana Rw4G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 465
AccI GTMKAC 1 cut(s) 372
AccII CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
AclWI GGATC 2 cut(s) 433, 868
AcoI YGGCCR 2 cut(s) 84, 156
AcuI CTGAAG 3 cut(s) 86, 268, 572
AcyI GRCGYC 3 cut(s) 165, 338, 462
AfiI CCNNNNNNNGG 7 cut(s) 69, 103, 124, 154, 334, 504, 1036
AflIII ACRYGT 2 cut(s) 511, 678
AgsI TTSAA 2 cut(s) 578, 851
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 5 cut(s) 68, 167, 186, 696, 1029
AluBI AGCT 5 cut(s) 385, 539, 583, 592, 610
AluI AGCT 5 cut(s) 385, 539, 583, 592, 610
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 433, 868
AoxI GGCC 7 cut(s) 84, 93, 126, 156, 184, 495, 669
ApeKI GCWGC 2 cut(s) 196, 199
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 5 cut(s) 364, 379, 437, 484, 555
AspS9I GGNCC 6 cut(s) 76, 94, 184, 495, 659, 669
AsuC2I CCSGG 1 cut(s) 499
AvaII GGWCC 2 cut(s) 76, 659
AxyI CCTNAGG 1 cut(s) 252
BbsI GAAGAC 2 cut(s) 120, 274
BbvCI CCTCAGC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 208, 211
BccI CCATC 2 cut(s) 650, 1017
BceAI ACGGC 5 cut(s) 113, 171, 280, 313, 351
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 5 cut(s) 70, 169, 188, 698, 1031
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 536
BfuI GTATCC 1 cut(s) 501
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 9 cut(s) 197, 200, 203, 206, 218, 360, 615, 780, 783
BlsI GCNGC 9 cut(s) 198, 201, 204, 207, 219, 361, 616, 781, 784
Bme1390I CCNGG 6 cut(s) 70, 169, 188, 499, 698, 1031
Bme18I GGWCC 2 cut(s) 76, 659
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 6 cut(s) 76, 94, 184, 495, 659, 669
BmiI GGNNCC 4 cut(s) 77, 78, 96, 694
BmrFI CCNGG 6 cut(s) 70, 169, 188, 499, 698, 1031
BmsI GCATC 4 cut(s) 217, 256, 481, 856
BpiI GAAGAC 2 cut(s) 120, 274
BpmI CTGGAG 2 cut(s) 197, 209
Bpu10I CCTNAGC 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 499
BsaHI GRCGYC 3 cut(s) 165, 338, 462
BsaJI CCNNGG 8 cut(s) 27, 168, 228, 273, 696, 780, 914, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 7 cut(s) 69, 103, 124, 154, 334, 504, 1036
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 148
Bse21I CCTNAGG 1 cut(s) 252
BseBI CCWGG 5 cut(s) 70, 169, 188, 698, 1031
BseDI CCNNGG 8 cut(s) 27, 168, 228, 273, 696, 780, 914, 1029
BseGI GGATG 3 cut(s) 247, 706, 1009
BseLI CCNNNNNNNGG 7 cut(s) 69, 103, 124, 154, 334, 504, 1036
BseMII CTCAG 4 cut(s) 243, 377, 482, 660
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 6 cut(s) 43, 122, 206, 262, 403, 455
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 208, 211
Bsh1236I CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
Bsh1285I CGRYCG 2 cut(s) 159, 279
BshFI GGCC 7 cut(s) 86, 95, 128, 158, 186, 497, 671
BsiEI CGRYCG 2 cut(s) 159, 279
BsiSI CCGG 2 cut(s) 83, 498
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 7 cut(s) 69, 103, 124, 154, 334, 504, 1036
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 7 cut(s) 86, 95, 128, 158, 186, 497, 671
Bsp143I GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
BspANI GGCC 7 cut(s) 86, 95, 128, 158, 186, 497, 671
BspCNI CTCAG 4 cut(s) 244, 378, 483, 659
BspFNI CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
BspHI TCATGA 1 cut(s) 951
BspLI GGNNCC 4 cut(s) 77, 78, 96, 694
BspPI GGATC 2 cut(s) 433, 868
BspQI GCTCTTC 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 8 cut(s) 27, 168, 228, 273, 696, 780, 914, 1029
BssMI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
BssNI GRCGYC 3 cut(s) 165, 338, 462
BssT1I CCWWGG 2 cut(s) 228, 914
Bst2UI CCWGG 5 cut(s) 70, 169, 188, 698, 1031
Bst4CI ACNGT 6 cut(s) 31, 64, 291, 320, 400, 754
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 3 cut(s) 165, 338, 462
BstC8I GCNNGC 4 cut(s) 84, 433, 557, 612
BstDEI CTNAG 5 cut(s) 252, 386, 491, 540, 646
BstDSI CCRYGG 2 cut(s) 27, 780
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 3 cut(s) 247, 706, 1009
BstFNI CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
BstHHI GCGC 5 cut(s) 364, 379, 437, 484, 555
BstKTI GATC 7 cut(s) 123, 136, 428, 490, 687, 863, 988
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
BstMCI CGRYCG 2 cut(s) 159, 279
BstNI CCWGG 5 cut(s) 70, 169, 188, 698, 1031
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 6 cut(s) 68, 167, 186, 497, 696, 1029
BstUI CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
BstV1I GCAGC 2 cut(s) 208, 211
BstV2I GAAGAC 2 cut(s) 120, 274
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BstZI CGGCCG 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 7 cut(s) 86, 95, 128, 158, 186, 497, 671
BtgI CCRYGG 2 cut(s) 27, 780
BtgZI GCGATG 1 cut(s) 365
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 3 cut(s) 247, 706, 1009
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 4 cut(s) 84, 433, 557, 612
CciI TCATGA 1 cut(s) 951
CfoI GCGC 5 cut(s) 364, 379, 437, 484, 555
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 6 cut(s) 76, 94, 184, 495, 659, 669
Cfr42I CCGCGG 1 cut(s) 783
CseI GACGC 4 cut(s) 173, 327, 383, 548
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 4 cut(s) 679, 776, 857, 952
DdeI CTNAG 5 cut(s) 252, 386, 491, 540, 646
DpnI GATC 7 cut(s) 122, 135, 427, 489, 686, 862, 987
DpnII GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 2 cut(s) 84, 156
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 4 cut(s) 272, 315, 409, 559
EclXI CGGCCG 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 228, 914
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 2 cut(s) 76, 659
Eco52I CGGCCG 1 cut(s) 156
Eco57I CTGAAG 3 cut(s) 86, 268, 572
Eco81I CCTNAGG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 5 cut(s) 68, 167, 186, 696, 1029
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 2 cut(s) 228, 914
ErhI CCWWGG 2 cut(s) 228, 914
FaeI CATG 4 cut(s) 682, 779, 860, 955
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 1 cut(s) 89
FatI CATG 4 cut(s) 678, 775, 856, 951
FauI CCCGC 4 cut(s) 66, 87, 105, 372
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 9 cut(s) 197, 200, 203, 206, 218, 360, 615, 780, 783
FokI GGATG 3 cut(s) 234, 713, 996
Fsp4HI GCNGC 9 cut(s) 197, 200, 203, 206, 218, 360, 615, 780, 783
FspBI CTAG 1 cut(s) 536
GlaI GCGC 5 cut(s) 363, 378, 436, 483, 554
GluI GCNGC 9 cut(s) 197, 200, 203, 206, 218, 360, 615, 780, 783
GsuI CTGGAG 2 cut(s) 197, 209
HaeIII GGCC 7 cut(s) 86, 95, 128, 158, 186, 497, 671
HapII CCGG 2 cut(s) 83, 498
HgaI GACGC 4 cut(s) 173, 327, 383, 548
HhaI GCGC 5 cut(s) 364, 379, 437, 484, 555
Hin1I GRCGYC 3 cut(s) 165, 338, 462
Hin1II CATG 4 cut(s) 682, 779, 860, 955
Hin6I GCGC 5 cut(s) 362, 377, 435, 482, 553
HinP1I GCGC 5 cut(s) 362, 377, 435, 482, 553
HincII GTYRAC 3 cut(s) 145, 153, 373
HindII GTYRAC 3 cut(s) 145, 153, 373
HinfI GANTC 5 cut(s) 20, 269, 566, 620, 919
HpaII CCGG 2 cut(s) 83, 498
Hpy166II GTNNAC 5 cut(s) 145, 153, 333, 373, 932
Hpy188I TCNGA 7 cut(s) 287, 316, 492, 596, 865, 924, 1055
Hpy188III TCNNGA 7 cut(s) 46, 104, 241, 251, 521, 563, 952
Hpy8I GTNNAC 5 cut(s) 145, 153, 333, 373, 932
Hpy99I CGWCG 8 cut(s) 68, 134, 164, 167, 320, 343, 377, 464
HpyAV CCTTC 7 cut(s) 349, 538, 734, 764, 911, 949, 1030
HpyCH4III ACNGT 6 cut(s) 31, 64, 291, 320, 400, 754
HpyCH4IV ACGT 4 cut(s) 450, 462, 513, 722
HpyCH4V TGCA 3 cut(s) 601, 727, 818
HpyF3I CTNAG 5 cut(s) 252, 386, 491, 540, 646
HpySE526I ACGT 4 cut(s) 450, 462, 513, 722
Hsp92I GRCGYC 3 cut(s) 165, 338, 462
Hsp92II CATG 4 cut(s) 682, 779, 860, 955
HspAI GCGC 5 cut(s) 362, 377, 435, 482, 553
KflI GGGWCCC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 985
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 3 cut(s) 193, 382, 607
Lsp1109I GCAGC 2 cut(s) 208, 211
LweI GCATC 4 cut(s) 217, 256, 481, 856
MaeI CTAG 1 cut(s) 536
MaeII ACGT 4 cut(s) 450, 462, 513, 722
MaeIII GTNAC 1 cut(s) 320
MalI GATC 7 cut(s) 122, 135, 427, 489, 686, 862, 987
MboI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
MboII GAAGA 5 cut(s) 125, 274, 578, 590, 889
MflI RGATCY 1 cut(s) 425
MluCI AATT 1 cut(s) 886
MlyI GAGTC 4 cut(s) 263, 560, 629, 913
MmeI TCCRAC 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 2 cut(s) 749, 828
MspA1I CMGCKG 3 cut(s) 202, 217, 782
MspI CCGG 2 cut(s) 83, 498
MspR9I CCNGG 6 cut(s) 70, 169, 188, 499, 698, 1031
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 5 cut(s) 70, 169, 188, 698, 1031
MvnI CGCG 7 cut(s) 364, 377, 379, 437, 482, 555, 782
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 499
NdeII GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 4 cut(s) 682, 779, 860, 955
NlaIV GGNNCC 4 cut(s) 77, 78, 96, 694
NmeAIII GCCGAG 1 cut(s) 61
NspI RCATGY 1 cut(s) 682
PagI TCATGA 1 cut(s) 951
PciI ACATGT 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 231, 347, 456
PctI GAATGC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 9 cut(s) 198, 201, 204, 207, 219, 361, 616, 781, 784
PleI GAGTC 4 cut(s) 263, 560, 628, 913
PpsI GAGTC 4 cut(s) 263, 560, 628, 913
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 5 cut(s) 68, 167, 186, 696, 1029
PspGI CCWGG 5 cut(s) 68, 167, 186, 696, 1029
PspN4I GGNNCC 4 cut(s) 77, 78, 96, 694
PspPI GGNCC 6 cut(s) 76, 94, 184, 495, 659, 669
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 1 cut(s) 425
SacII CCGCGG 1 cut(s) 783
SalI GTCGAC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 749, 828
SatI GCNGC 9 cut(s) 197, 200, 203, 206, 218, 360, 615, 780, 783
Sau3AI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 985
Sau96I GGNCC 6 cut(s) 76, 94, 184, 495, 659, 669
SchI GAGTC 4 cut(s) 263, 560, 629, 913
ScrFI CCNGG 6 cut(s) 70, 169, 188, 499, 698, 1031
SfaNI GCATC 4 cut(s) 217, 256, 481, 856
SfiI GGCCNNNNNGGCC 1 cut(s) 92
Sfr303I CCGCGG 1 cut(s) 783
SgrBI CCGCGG 1 cut(s) 783
SinI GGWCC 2 cut(s) 76, 659
Sse9I AATT 1 cut(s) 886
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 6 cut(s) 68, 167, 186, 497, 696, 1029
StyI CCWWGG 2 cut(s) 228, 914
TaaI ACNGT 6 cut(s) 31, 64, 291, 320, 400, 754
TaiI ACGT 4 cut(s) 453, 465, 516, 725
TaqI TCGA 6 cut(s) 123, 132, 372, 756, 807, 876
TaqII GACCGA 2 cut(s) 265, 676
TasI AATT 1 cut(s) 886
TauI GCSGC 7 cut(s) 205, 208, 220, 362, 617, 782, 785
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 749, 828
Tru9I TTAA 2 cut(s) 749, 828
TscAI CASTG 1 cut(s) 654
TseI GCWGC 2 cut(s) 196, 199
TspDTI ATGAA 6 cut(s) 368, 720, 774, 940, 968, 1008
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 76, 659
XagI CCTNNNNNAGG 1 cut(s) 122
XceI RCATGY 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 1 cut(s) 536
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.