Rh4DG297400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014177
Physical Location & Seq
Reverse (-)
51919287 .. 51922787
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG297400.1

Sequence Viewer

Length: 1107 bp
ATGGGGAAACTACTATGTGATTCCACCACGGTTGCCGAGACATTCCAGACCTCCTCGCCCACCGTCGCCTGGAGGGACACGCCGGCCAAGTCGGCGCCGCTCCAGCAGGAGGAAGACCTGATCGAGGCCGTAGATCTCGTTGTTGACCAGTCAACGGCCGACGACGCGTGGGGTGCTGTCGTGGGCCTGGAGGAGCAGCAGCGGCGGCATCTCCAGCGGCTTCACGCCAAGGGCGTTCTCTGGAAGCATCCGGAGGCGGAGGACGGCGACTCCTCGGTCGTCTTCAGACTGTCGCACGGCGGAGAGGTGTCGTCCGACGGTAACTGCCTGTTCACGGCGTCGCACAAGGCGATGAAGGCGGCGCGTGAGGTCGACGCGCGGGAGTTGAGGCGGCGGACGGTGCGGAGGTTCTTGGAGGACTATGGATCTGCGAGCGCGGAGGAGAGGGAGGTCATAAACGACGTCATTCGGCATCTCTACGCGCCTGATCTGAGGGCCGGGTGGGGGATACACGTCATTCAGGAGGTCAAGCTTCTGGCCAAGAAGGACGAGCGCGTGAGTCTTGACTCCGCCATTGAAGAGCTTCTTCAGCTCGGAATGCAGAGGGAGCTGGCGGCAGAGTCTATTTACAAAGAGAGATGTATCTCAGTGAGTGATGGACCGAGTTGGGCCAAATACATGTTGATCTCTGGTTCCCTGGATGATGAATATGATATCATCACGTTGCAATACACGGAGGAAGGCTTATTAACAATCGATGAAAATAGAGAAGGTCATGCCGCGGCTTTTGGAGATGATATAGCAATCGAGTGTCTTGCAACAGAGTTTAAGCGAGAGATATATGTGGTTCAAGCACATGGATCAGATGCTATGGTCGATGAGGAAAATTGTGTTTTCTTCCTTCCACACCGACCAAGGACTCGGATTTGTGAACCACCCTTCTTTCTTTTCATGAAAGGAACAGGTAAGAAACAAAGTTCTTTTCCTCTGGAAATATACATGCCAGGCATTTGTGGATTTCTTTATTTTTTTCTCTTAGACTACATTTCTGAACATTTCCTCATACAGGTTGGTGTGGTGCTGGTGCTGATCACTATGAACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.42

Weight (kDa)

4.88

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13100
fragaria_vesca FvH4_4g23370 FvH4_4g23370
malus_domestica MD16G1123300.v1.1
prunus_persica Prupe.1G222300_v2.0.a1 Prupe.1G222300_v2.0.a1
pyrus_communis pycom16g10550
rosa_chinensis RchiOBHm_Chr4g0429761
rosa_laevigata RLG00000007045
rosa_multiflora Rmu_sc0001935.1_g000009
rosa_roxburghii Rroxscaffold_5G00371530
rosa_rugosa Rorug04G0237900
rosa_samantha Rh4AG294300 Rh4BG300300 Rh4CG315900 Rh4DG297400
rosa_wichuraiana Rw4G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 372
AccII CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 2 cut(s) 433, 868
AcoI YGGCCR 3 cut(s) 84, 156, 537
AcuI CTGAAG 2 cut(s) 268, 572
AcyI GRCGYC 3 cut(s) 95, 338, 462
AfiI CCNNNNNNNGG 7 cut(s) 69, 109, 124, 154, 334, 504, 1066
AflIII ACRYGT 3 cut(s) 165, 511, 678
AgsI TTSAA 2 cut(s) 578, 851
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 4 cut(s) 68, 186, 696, 1003
AluBI AGCT 4 cut(s) 532, 583, 592, 610
AluI AGCT 4 cut(s) 532, 583, 592, 610
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 433, 868
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 7 cut(s) 84, 126, 156, 184, 495, 537, 669
ApeKI GCWGC 2 cut(s) 196, 199
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 6 cut(s) 97, 364, 379, 437, 484, 555
AspS9I GGNCC 4 cut(s) 184, 495, 659, 669
AsuC2I CCSGG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 659
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 120, 274
BbvI GCAGC 2 cut(s) 208, 211
BccI CCATC 1 cut(s) 650
BceAI ACGGC 5 cut(s) 113, 171, 280, 313, 351
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 4 cut(s) 70, 188, 698, 1005
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 1 cut(s) 1089
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 98
BfuI GTATCC 1 cut(s) 501
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 133
Bme1390I CCNGG 5 cut(s) 70, 188, 499, 698, 1005
Bme18I GGWCC 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 4 cut(s) 184, 495, 659, 669
BmiI GGNNCC 2 cut(s) 96, 694
BmrFI CCNGG 5 cut(s) 70, 188, 499, 698, 1005
BmsI GCATC 4 cut(s) 217, 256, 481, 856
BpiI GAAGAC 2 cut(s) 120, 274
BpmI CTGGAG 4 cut(s) 86, 91, 197, 209
BpuMI CCSGG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 756
BsaHI GRCGYC 3 cut(s) 95, 338, 462
BsaJI CCNNGG 6 cut(s) 27, 228, 273, 696, 780, 914
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 7 cut(s) 69, 109, 124, 154, 334, 504, 1066
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 250
BseBI CCWGG 4 cut(s) 70, 188, 698, 1005
BseCI ATCGAT 1 cut(s) 756
BseDI CCNNGG 6 cut(s) 27, 228, 273, 696, 780, 914
BseGI GGATG 2 cut(s) 247, 706
BseLI CCNNNNNNNGG 7 cut(s) 69, 109, 124, 154, 334, 504, 1066
BseMII CTCAG 2 cut(s) 482, 660
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 4 cut(s) 43, 206, 262, 455
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 208, 211
Bsh1236I CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
Bsh1285I CGRYCG 2 cut(s) 159, 279
BshFI GGCC 7 cut(s) 86, 128, 158, 186, 497, 539, 671
BshNI GGYRCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 756
BsiEI CGRYCG 2 cut(s) 159, 279
BsiSI CCGG 3 cut(s) 83, 251, 498
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 7 cut(s) 69, 109, 124, 154, 334, 504, 1066
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 7 cut(s) 86, 128, 158, 186, 497, 539, 671
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
BspANI GGCC 7 cut(s) 86, 128, 158, 186, 497, 539, 671
BspCNI CTCAG 2 cut(s) 483, 659
BspDI ATCGAT 1 cut(s) 756
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
BspHI TCATGA 1 cut(s) 951
BspLI GGNNCC 2 cut(s) 96, 694
BspPI GGATC 2 cut(s) 433, 868
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 6 cut(s) 27, 228, 273, 696, 780, 914
BssMI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
BssNI GRCGYC 3 cut(s) 95, 338, 462
BssT1I CCWWGG 2 cut(s) 228, 914
Bst2UI CCWGG 4 cut(s) 70, 188, 698, 1005
Bst4CI ACNGT 5 cut(s) 31, 64, 291, 320, 400
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 3 cut(s) 95, 338, 462
BstC8I GCNNGC 3 cut(s) 84, 433, 612
BstDEI CTNAG 3 cut(s) 491, 646, 1036
BstDSI CCRYGG 2 cut(s) 27, 780
BstENI CCTNNNNNAGG 2 cut(s) 122, 1064
BstF5I GGATG 2 cut(s) 247, 706
BstFNI CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 6 cut(s) 97, 364, 379, 437, 484, 555
BstKTI GATC 7 cut(s) 123, 136, 428, 490, 687, 863, 1092
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
BstMCI CGRYCG 2 cut(s) 159, 279
BstNI CCWGG 4 cut(s) 70, 188, 698, 1005
BstNSI RCATGY 2 cut(s) 682, 1003
BstSCI CCNGG 5 cut(s) 68, 186, 497, 696, 1003
BstUI CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
BstV1I GCAGC 2 cut(s) 208, 211
BstV2I GAAGAC 2 cut(s) 120, 274
BstX2I RGATCY 2 cut(s) 133, 425
BstYI RGATCY 2 cut(s) 133, 425
BstZI CGGCCG 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 756
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 7 cut(s) 86, 128, 158, 186, 497, 539, 671
BsuTUI ATCGAT 1 cut(s) 756
BtgI CCRYGG 2 cut(s) 27, 780
BtgZI GCGATG 1 cut(s) 365
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 2 cut(s) 247, 706
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 3 cut(s) 84, 433, 612
CciI TCATGA 1 cut(s) 951
CfoI GCGC 6 cut(s) 97, 364, 379, 437, 484, 555
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 4 cut(s) 184, 495, 659, 669
Cfr42I CCGCGG 1 cut(s) 783
ClaI ATCGAT 1 cut(s) 756
CseI GACGC 3 cut(s) 173, 327, 383
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 5 cut(s) 679, 776, 857, 952, 1000
DdeI CTNAG 3 cut(s) 491, 646, 1036
DinI GGCGCC 1 cut(s) 96
DpnI GATC 7 cut(s) 122, 135, 427, 489, 686, 862, 1091
DpnII GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 3 cut(s) 84, 156, 537
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 4 cut(s) 272, 315, 409, 559
EclXI CGGCCG 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 228, 914
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 659
Eco52I CGGCCG 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 268, 572
EcoNI CCTNNNNNAGG 2 cut(s) 122, 1064
EcoRII CCWGG 4 cut(s) 68, 186, 696, 1003
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 2 cut(s) 228, 914
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 228, 914
FaeI CATG 5 cut(s) 682, 779, 860, 955, 1003
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 1 cut(s) 89
FatI CATG 5 cut(s) 678, 775, 856, 951, 999
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 1 cut(s) 1089
FblI GTMKAC 1 cut(s) 372
FokI GGATG 2 cut(s) 234, 713
GlaI GCGC 6 cut(s) 96, 363, 378, 436, 483, 554
GsuI CTGGAG 4 cut(s) 86, 91, 197, 209
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 7 cut(s) 86, 128, 158, 186, 497, 539, 671
HapII CCGG 3 cut(s) 83, 251, 498
HgaI GACGC 3 cut(s) 173, 327, 383
HhaI GCGC 6 cut(s) 97, 364, 379, 437, 484, 555
Hin1I GRCGYC 3 cut(s) 95, 338, 462
Hin1II CATG 5 cut(s) 682, 779, 860, 955, 1003
Hin6I GCGC 6 cut(s) 95, 362, 377, 435, 482, 553
HinP1I GCGC 6 cut(s) 95, 362, 377, 435, 482, 553
HincII GTYRAC 3 cut(s) 145, 153, 373
HindII GTYRAC 3 cut(s) 145, 153, 373
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 6 cut(s) 20, 269, 559, 566, 620, 919
HpaII CCGG 3 cut(s) 83, 251, 498
Hpy166II GTNNAC 5 cut(s) 145, 153, 333, 373, 932
Hpy188I TCNGA 7 cut(s) 287, 316, 492, 596, 865, 924, 1051
Hpy188III TCNNGA 7 cut(s) 46, 241, 251, 521, 563, 952, 989
Hpy8I GTNNAC 5 cut(s) 145, 153, 333, 373, 932
Hpy99I CGWCG 7 cut(s) 68, 164, 167, 320, 343, 377, 464
HpyAV CCTTC 6 cut(s) 349, 538, 734, 764, 911, 949
HpyCH4III ACNGT 5 cut(s) 31, 64, 291, 320, 400
HpyCH4IV ACGT 3 cut(s) 462, 513, 722
HpyCH4V TGCA 3 cut(s) 601, 727, 818
HpyF3I CTNAG 3 cut(s) 491, 646, 1036
HpySE526I ACGT 3 cut(s) 462, 513, 722
Hsp92I GRCGYC 3 cut(s) 95, 338, 462
Hsp92II CATG 5 cut(s) 682, 779, 860, 955, 1003
HspAI GCGC 6 cut(s) 95, 362, 377, 435, 482, 553
KasI GGCGCC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 250
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 1089
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 3 cut(s) 105, 193, 607
Lsp1109I GCAGC 2 cut(s) 208, 211
LweI GCATC 4 cut(s) 217, 256, 481, 856
MaeII ACGT 3 cut(s) 462, 513, 722
MaeIII GTNAC 1 cut(s) 320
MalI GATC 7 cut(s) 122, 135, 427, 489, 686, 862, 1091
MbiI CCGCTC 1 cut(s) 100
MboI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
MboII GAAGA 5 cut(s) 125, 274, 578, 590, 889
MflI RGATCY 2 cut(s) 133, 425
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 1 cut(s) 886
MluI ACGCGT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 539
Mly113I GGCGCC 1 cut(s) 95
MlyI GAGTC 5 cut(s) 263, 560, 568, 629, 913
MmeI TCCRAC 1 cut(s) 339
Mox20I TGGCCA 1 cut(s) 539
MroI TCCGGA 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 749, 828
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 3 cut(s) 202, 217, 782
MspI CCGG 3 cut(s) 83, 251, 498
MspR9I CCNGG 5 cut(s) 70, 188, 499, 698, 1005
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 4 cut(s) 70, 188, 698, 1005
MvnI CGCG 8 cut(s) 167, 364, 377, 379, 437, 482, 555, 782
NaeI GCCGGC 1 cut(s) 84
NarI GGCGCC 1 cut(s) 95
NciI CCSGG 1 cut(s) 499
NdeII GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 5 cut(s) 682, 779, 860, 955, 1003
NlaIV GGNNCC 2 cut(s) 96, 694
NmeAIII GCCGAG 1 cut(s) 61
NspI RCATGY 2 cut(s) 682, 1003
PagI TCATGA 1 cut(s) 951
PciI ACATGT 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 347
PctI GAATGC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 5 cut(s) 263, 560, 567, 628, 913
PluTI GGCGCC 1 cut(s) 98
PpsI GAGTC 5 cut(s) 263, 560, 567, 628, 913
PscI ACATGT 1 cut(s) 678
Psp6I CCWGG 4 cut(s) 68, 186, 696, 1003
PspGI CCWGG 4 cut(s) 68, 186, 696, 1003
PspN4I GGNNCC 2 cut(s) 96, 694
PspPI GGNCC 4 cut(s) 184, 495, 659, 669
PsuI RGATCY 2 cut(s) 133, 425
SacII CCGCGG 1 cut(s) 783
SalI GTCGAC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 749, 828
Sau3AI GATC 7 cut(s) 120, 133, 425, 487, 684, 860, 1089
Sau96I GGNCC 4 cut(s) 184, 495, 659, 669
SchI GAGTC 5 cut(s) 263, 560, 568, 629, 913
ScrFI CCNGG 5 cut(s) 70, 188, 499, 698, 1005
SfaNI GCATC 4 cut(s) 217, 256, 481, 856
SfoI GGCGCC 1 cut(s) 96
Sfr303I CCGCGG 1 cut(s) 783
SgrBI CCGCGG 1 cut(s) 783
SinI GGWCC 1 cut(s) 659
Sse9I AATT 1 cut(s) 886
SspDI GGCGCC 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 68, 186, 497, 696, 1003
StyI CCWWGG 2 cut(s) 228, 914
TaaI ACNGT 5 cut(s) 31, 64, 291, 320, 400
TaiI ACGT 3 cut(s) 465, 516, 725
TaqI TCGA 5 cut(s) 123, 372, 756, 807, 876
TaqII GACCGA 2 cut(s) 265, 676
TasI AATT 1 cut(s) 886
TauI GCSGC 9 cut(s) 100, 205, 208, 220, 362, 394, 617, 782, 785
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 749, 828
Tru9I TTAA 2 cut(s) 749, 828
TscAI CASTG 1 cut(s) 654
TseI GCWGC 2 cut(s) 196, 199
TspDTI ATGAA 5 cut(s) 368, 720, 774, 940, 968
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 659
XagI CCTNNNNNAGG 2 cut(s) 122, 1064
XceI RCATGY 2 cut(s) 682, 1003
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 582
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.