Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

40432415 .. 40440064

Gene Structure 7650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAGCTTCACGCATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAAACTTCACTCCCCTTCCTTCATTCAACAACAACAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAGTAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGACCCGAAAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGGCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGTATGGCTTTTGGCTCTAGTTGTTTTACCAGCAAGGTCACACATAATACTTCGTTTTGGATTAGTTATTTATTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACGGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACTGTCTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCAGAAGAACTTGCATTTGCCTTGCGATGGTTTATGCTCCCTTTGACAAATATTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCATTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTCCGTAGGATCTTCAAAAATATTTTTAGCCACGCAGAGCAGATTTCACAGGCGATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACGCATAAAATGTACCTGTTATCAGATCCATCCATTGGTATAGCAGATGTTGTTTCTTTGTTATGCCTGGCTGGTATTATAGGTGCTGCGGTTTGGTCGGACTTTCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

385

Amino Acids

42.31

Weight (kDa)

9.72

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiQ	PF02361	105 - 347	4e-19	Cobalt transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	2 cut(s)	235, 1079
AciI	CCGC	6 cut(s)	177, 180, 200, 225, 276, 1133
AclWI	GGATC	3 cut(s)	474, 974, 1064
AcoI	YGGCCR	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	296, 1058
AfiI	CCNNNNNNNGG	3 cut(s)	235, 768, 1079
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	103, 973
AjnI	CCWGG	1 cut(s)	1110
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
AluBI	AGCT	6 cut(s)	6, 159, 173, 233, 634, 683
AluI	AGCT	6 cut(s)	6, 159, 173, 233, 634, 683
Alw26I	GTCTC	2 cut(s)	445, 926
AlwI	GGATC	3 cut(s)	474, 974, 1064
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	683, 1130
Asp700I	GAANNNNTTC	2 cut(s)	249, 816
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	239, 638
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	239, 638
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	670, 1117
BccI	CCATC	5 cut(s)	29, 457, 524, 762, 1081
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	1112
BcoDI	GTCTC	2 cut(s)	445, 926
BfaI	CTAG	4 cut(s)	279, 365, 515, 635
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	3 cut(s)	180, 684, 1131
BlsI	GCNGC	3 cut(s)	181, 685, 1132
Bme1390I	CCNGG	1 cut(s)	1112
Bme18I	GGWCC	2 cut(s)	239, 638
BmgT120I	GGNCC	2 cut(s)	239, 638
BmiI	GGNNCC	4 cut(s)	240, 241, 271, 306
BmrFI	CCNGG	1 cut(s)	1112
BmsI	GCATC	2 cut(s)	22, 608
BmtI	GCTAGC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	697
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	4 cut(s)	550, 580, 789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 768, 1079
Bse1I	ACTGG	2 cut(s)	803, 914
BseBI	CCWGG	1 cut(s)	1112
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	468, 1073
BseLI	CCNNNNNNNGG	3 cut(s)	235, 768, 1079
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	2 cut(s)	803, 914
BseRI	GAGGAG	2 cut(s)	552, 555
BseXI	GCAGC	2 cut(s)	670, 1117
BseYI	CCCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	252, 1049
BslI	CCNNNNNNNGG	3 cut(s)	235, 768, 1079
BsmAI	GTCTC	2 cut(s)	445, 926
BsmFI	GGGAC	2 cut(s)	252, 1049
BsnI	GGCC	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	261, 466, 966, 1069
BspACI	CCGC	6 cut(s)	177, 180, 200, 225, 276, 1133
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	240, 241, 271, 306
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	474, 974, 1064
BspT107I	GGYRCC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	803, 914
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	4 cut(s)	261, 466, 966, 1069
Bst2UI	CCWGG	1 cut(s)	1112
Bst4CI	ACNGT	4 cut(s)	31, 648, 703, 918
Bst6I	CTCTTC	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	6 cut(s)	184, 225, 280, 610, 676, 718
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	468, 1073
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	4 cut(s)	264, 469, 969, 1072
BstMAI	GTCTC	2 cut(s)	445, 926
BstMBI	GATC	4 cut(s)	261, 466, 966, 1069
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 192, 533, 605, 680, 1016
BstNI	CCWGG	1 cut(s)	1112
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	1110
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	670, 1117
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	966, 1069
BstYI	RGATCY	2 cut(s)	966, 1069
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	3 cut(s)	7, 781, 1025
BtsCI	GGATG	2 cut(s)	468, 1073
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	6 cut(s)	184, 225, 280, 610, 676, 718
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	239, 638
Csp6I	GTAC	2 cut(s)	295, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	2 cut(s)	455, 829
CviQI	GTAC	2 cut(s)	295, 1057
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	263, 468, 968, 1071
DpnII	GATC	4 cut(s)	261, 466, 966, 1069
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	239, 638
Eco57I	CTGAAG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	1110
FaeI	CATG	2 cut(s)	458, 832
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 804, 836
FaqI	GGGAC	2 cut(s)	252, 1049
FatI	CATG	2 cut(s)	454, 828
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	180, 684, 1131
FokI	GGATG	2 cut(s)	475, 1060
Fsp4HI	GCNGC	3 cut(s)	180, 684, 1131
FspBI	CTAG	4 cut(s)	279, 365, 515, 635
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	3 cut(s)	180, 684, 1131
GsaI	CCCAGC	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	2 cut(s)	458, 832
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	2 cut(s)	157, 231
HinfI	GANTC	1 cut(s)	339
HpaI	GTTAAC	1 cut(s)	921
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	3 cut(s)	145, 651, 921
Hpy188I	TCNGA	6 cut(s)	164, 257, 304, 1031, 1069, 1144
Hpy188III	TCNNGA	2 cut(s)	329, 495
Hpy8I	GTNNAC	3 cut(s)	145, 651, 921
HpyAV	CCTTC	3 cut(s)	101, 105, 652
HpyCH4III	ACNGT	4 cut(s)	31, 648, 703, 918
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	7 cut(s)	527, 572, 599, 755, 881, 1019, 1041
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 192, 533, 605, 680, 1016
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	458, 832
HspAI	GCGC	1 cut(s)	534
KflI	GGGWCCC	1 cut(s)	239
KspAI	GTTAAC	1 cut(s)	921
Kzo9I	GATC	4 cut(s)	261, 466, 966, 1069
LmnI	GCTCC	2 cut(s)	23, 783
Lsp1109I	GCAGC	2 cut(s)	670, 1117
LweI	GCATC	2 cut(s)	22, 608
MaeI	CTAG	4 cut(s)	279, 365, 515, 635
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	31, 310, 384
MalI	GATC	4 cut(s)	263, 468, 968, 1071
MboI	GATC	4 cut(s)	261, 466, 966, 1069
MboII	GAAGA	6 cut(s)	311, 489, 584, 697, 758, 961
MfeI	CAATTG	2 cut(s)	470, 936
MflI	RGATCY	2 cut(s)	966, 1069
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	6 cut(s)	165, 344, 470, 489, 624, 936
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	282, 1122
MnlI	CCTC	7 cut(s)	69, 573, 576, 834, 859, 1016, 1025
Mox20I	TGGCCA	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	249, 816
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	5 cut(s)	488, 623, 630, 692, 920
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	1112
MunI	CAATTG	2 cut(s)	470, 936
MvaI	CCWGG	1 cut(s)	1112
MwoI	GCNNNNNNNGC	6 cut(s)	179, 192, 533, 605, 680, 1016
NdeII	GATC	4 cut(s)	261, 466, 966, 1069
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	458, 832
NlaIV	GGNNCC	4 cut(s)	240, 241, 271, 306
NmeAIII	GCCGAG	1 cut(s)	474
NmuCI	GTSAC	2 cut(s)	310, 384
NspI	RCATGY	1 cut(s)	458
PdmI	GAANNNNTTC	2 cut(s)	249, 816
PflMI	CCANNNNNTGG	2 cut(s)	235, 1079
PkrI	GCNGC	3 cut(s)	181, 685, 1132
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	1110
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	1110
PspN4I	GGNNCC	4 cut(s)	240, 241, 271, 306
PspPI	GGNCC	2 cut(s)	239, 638
PspPPI	RGGWCCY	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	2 cut(s)	966, 1069
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	296, 1058
RsaNI	GTAC	2 cut(s)	295, 1057
SaqAI	TTAA	5 cut(s)	488, 623, 630, 692, 920
SatI	GCNGC	3 cut(s)	180, 684, 1131
Sau3AI	GATC	4 cut(s)	261, 466, 966, 1069
Sau96I	GGNCC	2 cut(s)	239, 638
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	1112
SfaNI	GCATC	2 cut(s)	22, 608
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	239, 638
Sse9I	AATT	6 cut(s)	165, 344, 470, 489, 624, 936
SsiI	CCGC	6 cut(s)	177, 180, 200, 225, 276, 1133
SspI	AATATT	2 cut(s)	793, 979
SspMI	CTAG	4 cut(s)	279, 365, 515, 635
StyD4I	CCNGG	1 cut(s)	1110
TaaI	ACNGT	4 cut(s)	31, 648, 703, 918
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	330
TasI	AATT	6 cut(s)	165, 344, 470, 489, 624, 936
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	5 cut(s)	488, 623, 630, 692, 920
Tru9I	TTAA	5 cut(s)	488, 623, 630, 692, 920
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	2 cut(s)	310, 384
TseI	GCWGC	2 cut(s)	683, 1130
Tsp45I	GTSAC	2 cut(s)	310, 384
TspDTI	ATGAA	5 cut(s)	87, 311, 496, 825, 835
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	1 cut(s)	810
Van91I	CCANNNNNTGG	2 cut(s)	235, 1079
VpaK11BI	GGWCC	2 cut(s)	239, 638
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	249, 816
XspI	CTAG	4 cut(s)	279, 365, 515, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.