Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

21768088 .. 21768765

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTAAGAGCATTAGCAATTGGATTGTTGGTTTCGTGTTTCGTTACATTAGTGTCAGGCAGTGATCATGACTTTGCACATTGTAATTGTGATGAGGAGGGTTTTTGGAGCATTCCAAACATTATAGAGGGCCAAAGAGTGAGCGATTTCTTGATTGCAATTGCATATTTTTCAATCCCTATAGAACTCCTTTACTTTGTCAGCTGCTCGAATTTTCCGTTCAAATGGGTTCTCCTGCAGTTTATTGCATTCATTGTACTCTGTGGCTTGACACATTTGTTAAATGCTTGGACATATTATGGCCGTTACACGTTCCAACTGATGCTGTCCCTCACCATTGCCAAGTTCCTCATGGCCCTGGTCTCTTGCGCAACCGCAATAACCCTTTTAACTCTGTTCCCTATGATTCTCAAAGTAAAAGTGAGAGAATTGTTCTTGAGGCAAAATGTGATGGAATTAGACCAAGAGGTTGGGATGATGAAGATAAAGAAGGAAGAGAGTTGGCATGTTCGAATGCTGACGCAGGAAATTAGGAAGTCGCTTGACAAGCATACCATATTGTATACAACTCTGGTTGAGCTTTCAAAGACGTTAGACTTGCATAACTGTGCAGTTTGGATGCCAAATGAGAAAAGAGGAGAGATGAACCTGACCCATGAGTTGAAAGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

226

Amino Acids

25.91

Weight (kDa)

6.65

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	41 - 139	7.2e-41	Ethylene receptor 1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	174, 223, 585, 664
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	204, 580
AluI	AGCT	2 cut(s)	204, 580
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	3 cut(s)	130, 301, 354
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	130, 355
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	2 cut(s)	180, 236
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	130, 355
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	312, 609
Bpu14I	TTCGAA	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	480, 624
BseMI	GCAATG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	110, 651
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	132, 303, 356
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	3 cut(s)	111, 248, 519
BsnI	GGCC	3 cut(s)	132, 303, 356
Bso31I	GGTCTC	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	3 cut(s)	132, 303, 356
BspHI	TCATGA	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	564
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	489
BstBI	TTCGAA	1 cut(s)	511
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	2 cut(s)	480, 624
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	180, 236
BstV1I	GCAGC	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	132, 303, 356
BtsCI	GGATG	2 cut(s)	480, 624
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	130, 355
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	4 cut(s)	68, 352, 506, 656
CviJI	RGCY	6 cut(s)	132, 204, 267, 303, 356, 580
CviKI_1	RGCY	6 cut(s)	132, 204, 267, 303, 356, 580
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	71, 355, 509, 659
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	67, 351, 505, 655
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	2 cut(s)	487, 631
Fsp4HI	GCNGC	1 cut(s)	205
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	132, 303, 356
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	4 cut(s)	71, 355, 509, 659
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188III	TCNNGA	3 cut(s)	68, 151, 436
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	2 cut(s)	311, 590
HpyCH4V	TGCA	7 cut(s)	77, 158, 164, 238, 248, 601, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	2 cut(s)	311, 590
Hsp92II	CATG	4 cut(s)	71, 355, 509, 659
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	42, 248, 344, 371, 509, 557, 662
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	312, 609
MaeII	ACGT	2 cut(s)	311, 590
MaeIII	GTNAC	2 cut(s)	43, 305
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	493, 506
MfeI	CAATTG	2 cut(s)	18, 159
MluCI	AATT	7 cut(s)	18, 85, 159, 211, 428, 455, 528
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	88, 91, 121, 341, 359, 432, 460, 629
MseI	TTAA	3 cut(s)	5, 281, 389
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	2 cut(s)	18, 159
Mva1269I	GAATGC	3 cut(s)	111, 248, 519
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	547
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	71, 355, 509, 659
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	511
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	3 cut(s)	111, 248, 519
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	130, 355
PstI	CTGCAG	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	5, 281, 389
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	130, 355
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	6 cut(s)	206, 314, 471, 582, 593, 651
SfaNI	GCATC	2 cut(s)	312, 609
SfcI	CTRYAG	2 cut(s)	180, 236
SfuI	TTCGAA	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	7 cut(s)	18, 85, 159, 211, 428, 455, 528
SsiI	CCGC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	2 cut(s)	314, 593
TaqI	TCGA	2 cut(s)	209, 511
TasI	AATT	7 cut(s)	18, 85, 159, 211, 428, 455, 528
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	5, 281, 389
Tru9I	TTAA	3 cut(s)	5, 281, 389
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	241, 494, 659
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.