Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035049.1

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 294

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

tcttcagggtttgattgcctgagtacacttggcagtgcagaaaatccattccaggttgttgttttggatcttcacatgcctcaaatggatgggtttgaagtggcaatgagaatcaggaaattccacaaccctaactggccgctgatcatagccctgacagcaagtgcggaggaagctgtgtgggagaaatgtctacagatgggaatgaacggactgatccgaaaacctgttattttgaaagggatgtcggatgagcttcggagagtactgcaacgagccggtgaaggtctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

6.06

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	2 cut(s)	140, 167
AclWI	GGATC	2 cut(s)	75, 211
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	2 cut(s)	25, 267
AgsI	TTSAA	2 cut(s)	98, 238
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	176, 256
AluI	AGCT	2 cut(s)	176, 256
AlwI	GGATC	2 cut(s)	75, 211
AoxI	GGCC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	293
BccI	CCATC	2 cut(s)	83, 193
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	94, 249, 256
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	279
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	67, 144, 216
BspACI	CCGC	2 cut(s)	140, 167
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	75, 211
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	3 cut(s)	67, 144, 216
Bst2UI	CCWGG	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	94, 249, 256
BstKTI	GATC	3 cut(s)	70, 147, 219
BstMBI	GATC	3 cut(s)	67, 144, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 173
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	94, 249, 256
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	24, 266
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	139, 152, 176, 256, 278
CviKI_1	RGCY	5 cut(s)	139, 152, 176, 256, 278
CviQI	GTAC	2 cut(s)	24, 266
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	69, 146, 218
DpnII	GATC	3 cut(s)	67, 144, 216
EaeI	YGGCCR	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 149
FatI	CATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	3 cut(s)	101, 256, 263
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	26, 194
Hpy188I	TCNGA	3 cut(s)	221, 250, 261
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	2 cut(s)	26, 194
HpyAV	CCTTC	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	38, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 173
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	67, 144, 216
LpnPI	CCDG	7 cut(s)	32, 38, 65, 100, 121, 167, 240
MalI	GATC	3 cut(s)	69, 146, 218
MboI	GATC	3 cut(s)	67, 144, 216
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	90, 163
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	158, 173
NdeII	GATC	3 cut(s)	67, 144, 216
NlaIII	CATG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	25, 267
RsaNI	GTAC	2 cut(s)	24, 266
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	3 cut(s)	67, 144, 216
ScaI	AGTACT	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	5 cut(s)	57, 178, 229, 258, 289
SfcI	CTRYAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	140, 167
StyD4I	CCNGG	1 cut(s)	51
TasI	AATT	1 cut(s)	119
TatI	WGTACW	2 cut(s)	23, 265
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	193
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.