Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

35943282 .. 35944214

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGCAAGGCAATATATGGATGTCCATGAACCCAATTAATCTTGCAGAAAGCGTGACACTTGTTCTCAGGTTTCAAATCCTTCATTCTTTAGGGAGAGCTATGTATGTCGCTGGAAGTCTATTGGAGCAACCAGATTCCAACTCAGAGTTCAGAGGACTCTGGGTTGTAGTAGCAAATGATGATAATGTAAACAGGACTACGACCACCAAACTTCTCCAGAAACTTGGCTGCATGTCAAGTCAGTACTGTTTCTTTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

88

Amino Acids

9.96

Weight (kDa)

5.62

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	231
AseI	ATTAAT	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	82, 159
BseXI	GCAGC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	81, 158
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	68, 145
BstF5I	GGATG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	28, 235
CviJI	RGCY	2 cut(s)	101, 231
CviKI_1	RGCY	2 cut(s)	101, 231
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	68, 145
FaeI	CATG	2 cut(s)	31, 238
FaiI	YATR	6 cut(s)	17, 19, 29, 104, 108, 236
FatI	CATG	2 cut(s)	27, 234
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	203
Hin1II	CATG	2 cut(s)	31, 238
HinfI	GANTC	2 cut(s)	137, 159
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	148, 155
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	7, 47, 234
HpyF3I	CTNAG	2 cut(s)	68, 145
Hsp92II	CATG	2 cut(s)	31, 238
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	55, 99, 147, 148, 181, 233
Lsp1109I	GCAGC	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	55
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	149, 253
MseI	TTAA	1 cut(s)	39
NlaIII	CATG	2 cut(s)	31, 238
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	39
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	153
SetI	ASST	3 cut(s)	74, 103, 264
Sse9I	AATT	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	251
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	44, 74
VspI	ATTAAT	1 cut(s)	39
XceI	RCATGY	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.