Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

47377306 .. 47378620

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAATTAAGAAGGCTTGAGCTTCAGCATTTGCAAAAAGATTGTCCAGATGATGCAAGGCAATATATGGATGTCCATGAACCCAATCAATCTTGCAGAAAGCATGACACTAGTTCTCGGGCTTCAAATCCTTCAATCTTTAGGGAGAGCTATGTATGTCGCTGGAAGCCTATTGGAGCAACCAGATTCCAACTCGAGTTCAGAGGACTCCGGGTTGTAGTAGCAGATGATGATAATGTAAACAGGACTACGACCACTAAATTGCTCCAGAAACTTGGCTGTCAAGTCGGTATTGTTTCTTTGAGGTTTGATTGCTTGCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

108

Amino Acids

12.63

Weight (kDa)

9.17

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	126, 135
AhlI	ACTAGT	1 cut(s)	110
AluBI	AGCT	2 cut(s)	22, 150
AluI	AGCT	2 cut(s)	22, 150
Ama87I	CYCGRG	2 cut(s)	117, 194
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AsuC2I	CCSGG	1 cut(s)	212
AvaI	CYCGRG	2 cut(s)	117, 194
BcnI	CCSGG	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	212
BmeT110I	CYCGRG	2 cut(s)	117, 194
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	117, 194
BsiSI	CCGG	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	117, 194
BstC8I	GCNNGC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	317
CviAII	CATG	2 cut(s)	77, 104
CviJI	RGCY	6 cut(s)	16, 22, 122, 150, 169, 279
CviKI_1	RGCY	6 cut(s)	16, 22, 122, 150, 169, 279
Eco57I	CTGAAG	1 cut(s)	8
Eco88I	CYCGRG	2 cut(s)	117, 194
FaeI	CATG	2 cut(s)	80, 107
FaiI	YATR	6 cut(s)	66, 68, 78, 105, 153, 157
FatI	CATG	2 cut(s)	76, 103
FokI	GGATG	1 cut(s)	83
FspBI	CTAG	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	251
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	80, 107
HinfI	GANTC	2 cut(s)	186, 207
HpaII	CCGG	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	203, 326
Hpy188III	TCNNGA	2 cut(s)	47, 268
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	6, 141
HpyCH4V	TGCA	4 cut(s)	34, 56, 96, 319
Hsp92II	CATG	2 cut(s)	80, 107
LmnI	GCTCC	2 cut(s)	176, 270
LpnPI	CCDG	6 cut(s)	60, 148, 196, 224, 229, 281
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	111
MluCI	AATT	2 cut(s)	5, 260
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	197, 297
MseI	TTAA	1 cut(s)	8
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	212
NciI	CCSGG	1 cut(s)	212
NlaIII	CATG	2 cut(s)	80, 107
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PspXI	VCTCGAGB	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	8
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	3 cut(s)	24, 152, 308
SfaNI	GCATC	1 cut(s)	43
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	17, 194
SmoI	CTYRAG	2 cut(s)	17, 194
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	2 cut(s)	5, 260
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	5, 260
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	17, 93
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.