Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

67620730 .. 67626788

Gene Structure 6059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTAGTACATTACGCTCCTTTGTGGACGTGACCAAGGCGTACTTGGAGACAATGCAGGGAGTACTCATGAATGAGCATGTAACATCCGAAAGAATAGGTAAGCTTGTGGAAGAGCTTATGAAAATTGAAGGCATAAATGACTATGATGTAATAGAAGCAGCTGCTGCAATTATTGGTGATGACTCCAAAATTGACCTCTTGTTCAGTTTGCCGACAACCTTAAAAGTCAATGGATTCATAAACTTCTTGGCCGTTAGAGAGATGGATGCCGGAGATTATTGTTGGCTTGAGCAATATATGGATGTCCATGAACCCAATCATTCTTGCAGAAAGCATGACACTTGTTCTCGTGTTTCAAATCCTTCATTCTTTAGGGAGAGCTATGTATGTCGCTGGAAGTCTATTGAGCAACCAGATTCCAACTTAGAGTTCGCAGAACTCCGTGTTGTAGTAGCAGATGATGATAATGTAAACAGGACTACGACCACTAAACTGCTCCGAAACTTGGTCGTCAAGTCGATCGTTTTTTCGAGACCCCAACAGATTACATCGACAAATTTGGAGACGAGAACCCAAATTGGAACGACCGGTTCCTCTTCAAGTGTCTTGTCCGATTTTCCTTGCCGGGGACCTTTGGGGATCACGACCGAGATCTACGTCATCGTTTGTTGCATCCATCAACCACCTCGTCCGGGGCCAAATTTGTTTGGTTCATCACCCACTCCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

244

Amino Acids

27.3

Weight (kDa)

5.09

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	559, 703
AfaI	GTAC	3 cut(s)	10, 44, 66
AfiI	CCNNNNNNNGG	3 cut(s)	508, 629, 695
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	131, 360, 603
AjiI	CACGTC	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	4 cut(s)	106, 118, 164, 384
AluI	AGCT	4 cut(s)	106, 118, 164, 384
Alw26I	GTCTC	3 cut(s)	44, 529, 560
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	252, 698
ApeKI	GCWGC	3 cut(s)	161, 164, 167
ApoI	RAATTY	2 cut(s)	559, 703
AsiGI	ACCGGT	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	632, 698
AsuC2I	CCSGG	2 cut(s)	629, 696
AsuHPI	GGTGA	2 cut(s)	191, 711
AvaII	GGWCC	1 cut(s)	632
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	151, 154, 173
BccI	CCATC	2 cut(s)	259, 687
BceAI	ACGGC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	629, 696
BcoDI	GTCTC	3 cut(s)	44, 529, 560
BfaI	CTAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	3 cut(s)	162, 165, 168
BlsI	GCNGC	3 cut(s)	163, 166, 169
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	629, 696
Bme18I	GGWCC	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	632, 698
BmiI	GGNNCC	3 cut(s)	595, 633, 699
BmrFI	CCNGG	2 cut(s)	629, 696
BmsI	GCATC	2 cut(s)	259, 684
BpmI	CTGGAG	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	629, 696
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	3 cut(s)	36, 628, 695
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 629, 695
Bse118I	RCCGGY	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	36, 628, 695
BseGI	GGATG	4 cut(s)	86, 274, 310, 675
BseLI	CCNNNNNNNGG	3 cut(s)	508, 629, 695
BseXI	GCAGC	3 cut(s)	151, 154, 173
Bsh1285I	CGRYCG	3 cut(s)	525, 591, 651
BshFI	GGCC	2 cut(s)	254, 700
BshTI	ACCGGT	1 cut(s)	590
BsiEI	CGRYCG	3 cut(s)	525, 591, 651
BsiSI	CCGG	4 cut(s)	273, 591, 628, 695
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	3 cut(s)	508, 629, 695
BsmAI	GTCTC	3 cut(s)	44, 529, 560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	254, 700
Bso31I	GGTCTC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	522, 642, 654
BspANI	GGCC	2 cut(s)	254, 700
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	595, 633, 699
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	3 cut(s)	36, 628, 695
BssMI	GATC	3 cut(s)	522, 642, 654
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	351
Bst6I	CTCTTC	2 cut(s)	108, 604
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	4 cut(s)	86, 274, 310, 675
BstKTI	GATC	3 cut(s)	525, 645, 657
BstMAI	GTCTC	3 cut(s)	44, 529, 560
BstMBI	GATC	3 cut(s)	522, 642, 654
BstMCI	CGRYCG	3 cut(s)	525, 591, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	627, 694
BstV1I	GCAGC	3 cut(s)	151, 154, 173
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	254, 700
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	4 cut(s)	86, 274, 310, 675
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	632, 698
Csp6I	GTAC	3 cut(s)	9, 43, 65
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	4 cut(s)	70, 80, 311, 338
CviJI	RGCY	8 cut(s)	5, 106, 118, 164, 254, 289, 384, 700
CviKI_1	RGCY	8 cut(s)	5, 106, 118, 164, 254, 289, 384, 700
CviQI	GTAC	3 cut(s)	9, 43, 65
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	3 cut(s)	524, 644, 656
DpnII	GATC	3 cut(s)	522, 642, 654
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	108, 604
EarI	CTCTTC	2 cut(s)	108, 604
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	4 cut(s)	73, 83, 314, 341
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	4 cut(s)	69, 79, 310, 337
Fnu4HI	GCNGC	3 cut(s)	162, 165, 168
FokI	GGATG	4 cut(s)	73, 281, 317, 662
Fsp4HI	GCNGC	3 cut(s)	162, 165, 168
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	162, 165, 168
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	254, 700
HapII	CCGG	4 cut(s)	273, 591, 628, 695
Hin1II	CATG	4 cut(s)	73, 83, 314, 341
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	185, 237, 419
HpaII	CCGG	4 cut(s)	273, 591, 628, 695
HphI	GGTGA	2 cut(s)	191, 711
Hpy166II	GTNNAC	2 cut(s)	28, 475
Hpy188I	TCNGA	3 cut(s)	91, 503, 616
Hpy188III	TCNNGA	4 cut(s)	70, 534, 646, 728
Hpy8I	GTNNAC	2 cut(s)	28, 475
HpyAV	CCTTC	2 cut(s)	125, 375
HpyCH4IV	ACGT	2 cut(s)	30, 660
HpyCH4V	TGCA	4 cut(s)	58, 170, 330, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	30, 660
Hsp92II	CATG	4 cut(s)	73, 83, 314, 341
Kzo9I	GATC	3 cut(s)	522, 642, 654
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	23, 504
LpnPI	CCDG	8 cut(s)	44, 286, 382, 429, 463, 604, 641, 708
Lsp1109I	GCAGC	3 cut(s)	151, 154, 173
LweI	GCATC	2 cut(s)	259, 684
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	30, 660
MaeIII	GTNAC	2 cut(s)	31, 82
MalI	GATC	3 cut(s)	524, 644, 656
MboI	GATC	3 cut(s)	522, 642, 654
MboII	GAAGA	2 cut(s)	125, 591
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	6 cut(s)	126, 171, 192, 559, 579, 703
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	3 cut(s)	209, 607, 699
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	4 cut(s)	273, 591, 628, 695
MspR9I	CCNGG	2 cut(s)	629, 696
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	629, 696
NdeII	GATC	3 cut(s)	522, 642, 654
NlaIII	CATG	4 cut(s)	73, 83, 314, 341
NlaIV	GGNNCC	3 cut(s)	595, 633, 699
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	83
PagI	TCATGA	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	237, 419
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	163, 166, 169
Ple19I	CGATCG	1 cut(s)	525
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
PspN4I	GGNNCC	3 cut(s)	595, 633, 699
PspPI	GGNCC	2 cut(s)	632, 698
PspPPI	RGGWCCY	1 cut(s)	632
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	654
PvuI	CGATCG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	3 cut(s)	10, 44, 66
RsaNI	GTAC	3 cut(s)	9, 43, 65
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	3 cut(s)	162, 165, 168
Sau3AI	GATC	3 cut(s)	522, 642, 654
Sau96I	GGNCC	2 cut(s)	632, 698
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	629, 696
SfaNI	GCATC	2 cut(s)	259, 684
SinI	GGWCC	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	6 cut(s)	126, 171, 192, 559, 579, 703
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	627, 694
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	2 cut(s)	33, 663
TaqI	TCGA	3 cut(s)	521, 533, 554
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	6 cut(s)	126, 171, 192, 559, 579, 703
TatI	WGTACW	2 cut(s)	8, 64
TfiI	GAWTC	2 cut(s)	237, 419
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	161, 164, 167
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	6 cut(s)	86, 137, 229, 327, 357, 705
TspGWI	ACGGA	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	2 cut(s)	559, 703
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.