Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005257

Physical Location & Seq

Genomic Coordinates Forward (+)

48096316 .. 48099679

Gene Structure 3364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGGTGAATAGTAGTCACTTGGCTGTAACGTTAAGAGCGGTAGCTCTTGGGTTTTTAGTTTCCTGTTTGGCTGTATCTGCCTCAGCCAGTGATAATGATTTTGTGAGTTGTAATTGTGATGATGAGGGTTCTTGGAGCATTCAGAGCATTTTAGAGTGTCAACGAGTGAGTGATTTCTTGATTGCAATAGCGTATTTTTCGATCCCTATAGAGCTCCTTTACTTTGTCAGCTGCTCAAACTTTCCATTCAAATGGGTCCTCCTTCAGTTCATCGCGTTTATAGTCCTTTGTGGATTGACCCATTTGCTCAATGCCTGGACTTATTATGGCCCTCATAGTGCTCACTCTTTCCAATTAATGCTTGCCCTCACCATTTCCAAATTCCTCACGGCCTTGGTCTCATGTGCAACTGCAATAACCCTTTTAACTCTTTTCCCTCTTATTCTGAAAGTCAAAGTAAGAGAGTTGTTCTTGAGGCAGAATGTGTTGGAATTAGATCAAGAGGTTGGGATGATGAAGATAAAGAAGGAAGCGAGTTGGCATGTCCGTATGCTGACCCAGGAAATTAGAAAGTCACTTGATAAGCATAACATATTGTATACAACGCTGGTTGAGCTTTCAAAGACATTGGACTTGCATAACTGTGCAGTTTGGATGCCGAATGAGAACAGGACAGAGATGAACCTGACTCATGAGTTGAAAGGGAGTTCTTCGAGAAATTATATTCGTACTATCCCAATTAATGATCCAAATGTGTTGGAGATAAGAGAGAGCAAGAGGGTAAGAATCCTGAGGCCTGATTCCGCACTTGGAGCTGCAAGTAGTGGTGAGTCTAGCGAATGTGGTGCTGTAGCAGCAATTCGGATGCCAATGCTTAGAGTTTCGAATTTTAAAGGGGGTACACCACAGTTAGTTGATACTCCTTATGCTATATTGGTTTTGGTTCTTCCAATGTCAGATTCTAGAGTTTGGAGCTATAATGAAATGGAGATAGTGGAAGTCGTGGCTGACCAGGTTGCGGTGGCTCTATCCCACGCTGCAGTGCTTGAAGAGTCTCAACTAATGAGAGAGAAACTGAGAGAACAAAATCGTGCACTACAACAGGCTCAGAAGAATGCAATGATGGCCAGCCAAGCAAGGTACTCATTTCAGAAGGTAATGAGTAATGGAATGAGAAGGCCAATGCATTCCATTTTGGGATTGCTGTCAACATTTGAGAATATGAGTTTGAAACAGAGGATTATTGTAGACACGATGGTAAAAACTAGCTATGTTCTCTCCACTTTGATAACTGATGTCATGGAGATGTCAGCAAAAGATAATGGAAGGTTCCCACTAGAGATGAGGCCTTTTCAGCTTCACTCTATGATCAAAGAAGCTTCTTGCCTTGCCAAGTGCTTGTGTGTGTACAAAGGCTTTAGGTTTGAAGTTGATGTTCAGAGCTCATTGCCTAATCAGGTGATGGGGGATGAAAGAAGGGCTTTCCAAGTAATCTTGCATATGGTTGGATCTCTTCTGAGCACCTATAAGGGAGAGGGAACTGTCATCTTTCGGGCTGTTCTAGAGAGTGGTTCTGAGAGCCAGGATGATAAATTGCAACAAATGTGGAGAACAGGTACACCAGATGAGTATGTATCTGTGAGGTTCGAATTTGAGATTAGTGACGGAACCTCTCATTCCAGTGGAGGATTATCAATGATTGATTATGCTGGTAGGAGGAACAACAGCAATGAAATTAAGAAGGGCCTGAGCTTCAGCATTTGCAAAAAGATTGTCCAGATGATGCAAGGAAATATCTGGATGTCCATGAATCCAATCAATCTTGCAGAAAGCATGACACTTGTTCTCAGGTTTCAAGTCCTTCATCCTGTTGGGAGAGCTATGTATGTCGCTGGAAATCTCTTGGAGCAACCAAATTCCAACTCAGAGTTCAGAGGACTCCGGGTTGTAGTAGCGGATGATGATAATGTAAATAGGACTGTGACCGCTAAACTGCTCCAGAAACTTGGCTGTCAAGTCAGTACTGTTTCTTCAGGGTTTGATTGCCTGAGTACCCTTGGCAGTGCAGAAAATCCATTCCAGGTTGTTGTTTTGGATCTTCACATGCCTGAAATGGATGGGTTTGAAGTGGCAATGCGAATCAGGAAATTCCACAACCCTAACTGGCCGCTGATCGTAGCCCTGACAGCAAGTGCGGAGGAAGCTGTGTGGGAGAAATGTCTACAGATGGGAATGAACGGACTGATCCGAAAACCTGTTATTTTGAAAGGGATGTCGGATGAGCTTCGGAGAGTACTGCAACGAGCCGGTGAAGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

774

Amino Acids

86.65

Weight (kDa)

7.54

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	50 - 151	1.7e-40	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	196 - 343	1.9e-09	GAF domain
Response_reg	PF00072	649 - 755	6.7e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04580 AT3G04580
fragaria_vesca	FvH4_3g14281 FvH4_5g22480 FvH4_6g02340
malus_domestica	MD00G1114300.v1.1 MD12G1245100.v1.1
prunus_persica	Prupe.6G348000_v2.0.a1
pyrus_communis	pycom04g20230 pycom04g20240 pycom12g22480
rosa_chinensis	RchiOBHm_Chr3g0450101 RchiOBHm_Chr6g0274471
rosa_laevigata	RLG00000008654 RLG00000025756
rosa_multiflora	Rmu_sc0018882.1_g000003 Rmu_sc0035048.1_g000001 Rmu_sc0035049.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117790 Rroxscaffold_3G00276360 Rroxscaffold_7G00200060
rosa_rugosa	Rorug02G0625400 Rorug02G0625500 Rorug04G0237900
rosa_samantha	Rh3AG024700 Rh3BG025300 Rh3CG024200 Rh3DG025300
rosa_wichuraiana	Rw3G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	3 cut(s)	599, 1248, 2221
AccII	CGCG	1 cut(s)	275
AciI	CCGC	7 cut(s)	38, 804, 1019, 1955, 1986, 2168, 2195
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
AcoI	YGGCCR	2 cut(s)	1125, 2165
AcsI	RAATTY	5 cut(s)	380, 886, 1649, 1915, 2147
AcuI	CTGAAG	3 cut(s)	248, 1738, 2016
AfaI	GTAC	8 cut(s)	730, 901, 1142, 1409, 1618, 2023, 2053, 2295
AfiI	CCNNNNNNNGG	1 cut(s)	1018
AgsI	TTSAA	9 cut(s)	250, 621, 700, 1049, 1231, 1427, 1856, 2126, 2266
AjnI	CCWGG	5 cut(s)	314, 558, 1011, 1581, 2079
AjuI	GAANNNNNNNTTGG	4 cut(s)	943, 975, 1913, 1945
Alw21I	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
Alw26I	GTCTC	2 cut(s)	403, 1059
Alw44I	GTGCAC	1 cut(s)	1092
AlwI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
AoxI	GGCC	8 cut(s)	328, 390, 794, 1125, 1178, 1346, 1744, 2165
ApaLI	GTGCAC	1 cut(s)	1092
ApeKI	GCWGC	4 cut(s)	231, 815, 854, 1037
ApoI	RAATTY	5 cut(s)	380, 886, 1649, 1915, 2147
ArsI	GACNNNNNNTTYG	2 cut(s)	1758, 1790
AseI	ATTAAT	2 cut(s)	356, 741
AspS9I	GGNCC	3 cut(s)	256, 329, 1744
AsuC2I	CCSGG	1 cut(s)	1943
AsuHPI	GGTGA	5 cut(s)	16, 361, 839, 1471, 2321
AsuII	TTCGAA	2 cut(s)	884, 1647
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	1096
BalI	TGGCCA	1 cut(s)	1127
BanII	GRGCYC	2 cut(s)	216, 1445
BarI	GAAGNNNNNNTAC	2 cut(s)	2014, 2046
Bbv12I	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	218, 802, 866, 1024
BccI	CCATC	5 cut(s)	1117, 1249, 1456, 2111, 2221
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	5 cut(s)	316, 560, 1013, 1583, 2081
BclI	TGATCA	1 cut(s)	1368
BcnI	CCSGG	1 cut(s)	1943
BcoDI	GTCTC	2 cut(s)	403, 1059
BfaI	CTAG	5 cut(s)	834, 963, 1266, 1337, 1562
BfmI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
BisI	GCNGC	5 cut(s)	232, 816, 855, 1038, 2168
BlsI	GCNGC	5 cut(s)	233, 817, 856, 1039, 2169
BmcAI	AGTACT	2 cut(s)	2023, 2295
Bme1390I	CCNGG	6 cut(s)	316, 560, 1013, 1583, 1943, 2081
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	256, 329, 1744
BmiI	GGNNCC	3 cut(s)	257, 1331, 1669
BmrFI	CCNGG	6 cut(s)	316, 560, 1013, 1583, 1943, 2081
BmsI	GCATC	3 cut(s)	645, 855, 1773
BpmI	CTGGAG	1 cut(s)	1982
Bpu10I	CCTNAGC	2 cut(s)	82, 1748
Bpu14I	TTCGAA	2 cut(s)	884, 1647
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	1943
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	393, 558, 2056
BsaXI	ACNNNNNCTCC	2 cut(s)	1600, 1630
Bsc4I	CCNNNNNNNGG	1 cut(s)	1018
Bse118I	RCCGGY	1 cut(s)	2306
Bse1I	ACTGG	3 cut(s)	87, 1680, 2168
Bse21I	CCTNAGG	1 cut(s)	791
Bse3DI	GCAATG	4 cut(s)	1125, 1445, 1735, 2139
BseBI	CCWGG	5 cut(s)	316, 560, 1013, 1583, 2081
BseDI	CCNNGG	3 cut(s)	393, 558, 2056
BseLI	CCNNNNNNNGG	1 cut(s)	1018
BseMI	GCAATG	4 cut(s)	1125, 1445, 1735, 2139
BseNI	ACTGG	3 cut(s)	87, 1680, 2168
BseSI	GKGCMC	1 cut(s)	1096
BseXI	GCAGC	4 cut(s)	218, 802, 866, 1024
BsgI	GTGCAG	2 cut(s)	666, 2085
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	8 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167
BsiHKAI	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
BsiSI	CCGG	2 cut(s)	1942, 2307
BslI	CCNNNNNNNGG	1 cut(s)	1018
BsmAI	GTCTC	2 cut(s)	403, 1059
BsmI	GAATGC	3 cut(s)	138, 1120, 1186
BsnI	GGCC	8 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	2 cut(s)	884, 1647
Bsp1286I	GDGCHC	5 cut(s)	216, 343, 1096, 1445, 1523
Bsp1407I	TGTACA	1 cut(s)	1407
Bsp143I	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
BspACI	CCGC	7 cut(s)	38, 804, 1019, 1955, 1986, 2168, 2195
BspANI	GGCC	8 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	257, 1331, 1669
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
BspT104I	TTCGAA	2 cut(s)	884, 1647
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	4 cut(s)	1125, 1445, 1735, 2139
BsrFI	RCCGGY	1 cut(s)	2306
BsrGI	TGTACA	1 cut(s)	1407
BsrI	ACTGG	3 cut(s)	87, 1680, 2168
BssAI	RCCGGY	1 cut(s)	2306
BssECI	CCNNGG	3 cut(s)	393, 558, 2056
BssMI	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
BssNAI	GTATAC	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	393, 2056
Bst1107I	GTATAC	1 cut(s)	600
Bst2UI	CCWGG	5 cut(s)	316, 560, 1013, 1583, 2081
Bst4CI	ACNGT	5 cut(s)	644, 909, 1543, 1981, 2026
Bst6I	CTCTTC	2 cut(s)	1044, 1518
BstAUI	TGTACA	1 cut(s)	1407
BstBI	TTCGAA	2 cut(s)	884, 1647
BstC8I	GCNNGC	2 cut(s)	363, 1129
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	8 cut(s)	204, 499, 748, 1371, 1511, 2098, 2175, 2247
BstMAI	GTCTC	2 cut(s)	403, 1059
BstMBI	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
BstNI	CCWGG	5 cut(s)	316, 560, 1013, 1583, 2081
BstNSI	RCATGY	2 cut(s)	545, 2107
BstSCI	CCNGG	6 cut(s)	314, 558, 1011, 1581, 1941, 2079
BstSFI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
BstSLI	GKGCMC	1 cut(s)	1096
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	218, 802, 866, 1024
BstX2I	RGATCY	2 cut(s)	1508, 2095
BstXI	CCANNNNNNTGG	2 cut(s)	252, 2006
BstYI	RGATCY	2 cut(s)	1508, 2095
BstZ17I	GTATAC	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	8 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167
BtgZI	GCGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	1047, 2068
BtsIMutI	CAGTG	4 cut(s)	94, 1047, 1687, 2068
Cac8I	GCNNGC	2 cut(s)	363, 1129
CciI	TCATGA	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	2306
Cfr13I	GGNCC	3 cut(s)	256, 329, 1744
CsiI	ACCWGGT	1 cut(s)	1011
Csp6I	GTAC	8 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294
CspCI	CAANNNNNGTGG	2 cut(s)	1586, 1621
CviAII	CATG	7 cut(s)	402, 542, 692, 1300, 1807, 1834, 2104
CviQI	GTAC	8 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294
DpnI	GATC	8 cut(s)	203, 498, 747, 1370, 1510, 2097, 2174, 2246
DpnII	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	2 cut(s)	1125, 2165
Eam1104I	CTCTTC	2 cut(s)	1044, 1518
EarI	CTCTTC	2 cut(s)	1044, 1518
Ecl136II	GAGCTC	2 cut(s)	214, 1443
Eco130I	CCWWGG	2 cut(s)	393, 2056
Eco147I	AGGCCT	2 cut(s)	796, 1348
Eco24I	GRGCYC	2 cut(s)	216, 1445
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	2 cut(s)	214, 1443
Eco57I	CTGAAG	3 cut(s)	248, 1738, 2016
Eco81I	CCTNAGG	1 cut(s)	791
EcoICRI	GAGCTC	2 cut(s)	214, 1443
EcoO109I	RGGNCCY	2 cut(s)	256, 1744
EcoRII	CCWGG	5 cut(s)	314, 558, 1011, 1581, 2079
EcoT14I	CCWWGG	2 cut(s)	393, 2056
EcoT22I	ATGCAT	1 cut(s)	1188
EcoT38I	GRGCYC	2 cut(s)	216, 1445
ErhI	CCWWGG	2 cut(s)	393, 2056
FaeI	CATG	7 cut(s)	405, 545, 695, 1303, 1810, 1837, 2107
FalI	AAGNNNNNCTT	2 cut(s)	1465, 1497
FatI	CATG	7 cut(s)	401, 541, 691, 1299, 1806, 1833, 2103
FauNDI	CATATG	1 cut(s)	1500
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	3 cut(s)	599, 1248, 2221
Fnu4HI	GCNGC	5 cut(s)	232, 816, 855, 1038, 2168
FriOI	GRGCYC	2 cut(s)	216, 1445
Fsp4HI	GCNGC	5 cut(s)	232, 816, 855, 1038, 2168
FspBI	CTAG	5 cut(s)	834, 963, 1266, 1337, 1562
GluI	GCNGC	5 cut(s)	232, 816, 855, 1038, 2168
GsuI	CTGGAG	1 cut(s)	1982
HaeIII	GGCC	8 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167
HapII	CCGG	2 cut(s)	1942, 2307
Hin1II	CATG	7 cut(s)	405, 545, 695, 1303, 1810, 1837, 2107
HincII	GTYRAC	2 cut(s)	161, 1209
HindII	GTYRAC	2 cut(s)	161, 1209
HindIII	AAGCTT	1 cut(s)	1377
HinfI	GANTC	9 cut(s)	688, 786, 800, 830, 959, 1052, 1810, 1938, 2139
HpaII	CCGG	2 cut(s)	1942, 2307
HphI	GGTGA	5 cut(s)	16, 361, 839, 1471, 2321
Hpy166II	GTNNAC	9 cut(s)	161, 600, 902, 1094, 1209, 1249, 1408, 1619, 2222
Hpy8I	GTNNAC	9 cut(s)	161, 600, 902, 1094, 1209, 1249, 1408, 1619, 2222
HpyAV	CCTTC	9 cut(s)	272, 520, 1147, 1170, 1320, 1470, 1735, 1871, 2306
HpyCH4III	ACNGT	5 cut(s)	644, 909, 1543, 1981, 2026
HpyCH4IV	ACGT	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	7 cut(s)	405, 545, 695, 1303, 1810, 1837, 2107
Ksp22I	TGATCA	1 cut(s)	1368
Kzo9I	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
LmnI	GCTCC	6 cut(s)	135, 219, 812, 972, 1906, 2001
Lsp1109I	GCAGC	4 cut(s)	218, 802, 866, 1024
LweI	GCATC	3 cut(s)	645, 855, 1773
MabI	ACCWGGT	1 cut(s)	1011
MaeI	CTAG	5 cut(s)	834, 963, 1266, 1337, 1562
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	5 cut(s)	14, 25, 573, 1661, 1981
MalI	GATC	8 cut(s)	203, 498, 747, 1370, 1510, 2097, 2174, 2246
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
MboII	GAAGA	8 cut(s)	529, 702, 938, 1061, 1123, 1505, 2022, 2090
MflI	RGATCY	2 cut(s)	1508, 2095
MhlI	GDGCHC	5 cut(s)	216, 343, 1096, 1445, 1523
MlsI	TGGCCA	1 cut(s)	1127
MluNI	TGGCCA	1 cut(s)	1127
MlyI	GAGTC	4 cut(s)	682, 839, 1061, 1932
MmeI	TCCRAC	5 cut(s)	468, 738, 1486, 1944, 2256
Mox20I	TGGCCA	1 cut(s)	1127
Mph1103I	ATGCAT	1 cut(s)	1188
MscI	TGGCCA	1 cut(s)	1127
MseI	TTAA	6 cut(s)	32, 356, 425, 741, 891, 1737
MslI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
Msp20I	TGGCCA	1 cut(s)	1127
MspA1I	CMGCKG	2 cut(s)	231, 2170
MspI	CCGG	2 cut(s)	1942, 2307
MspR9I	CCNGG	6 cut(s)	316, 560, 1013, 1583, 1943, 2081
Mva1269I	GAATGC	3 cut(s)	138, 1120, 1186
MvaI	CCWGG	5 cut(s)	316, 560, 1013, 1583, 2081
MvnI	CGCG	1 cut(s)	275
NciI	CCSGG	1 cut(s)	1943
NdeI	CATATG	1 cut(s)	1500
NdeII	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
NlaIII	CATG	7 cut(s)	405, 545, 695, 1303, 1810, 1837, 2107
NlaIV	GGNNCC	3 cut(s)	257, 1331, 1669
NmuCI	GTSAC	4 cut(s)	14, 573, 1661, 1981
NsiI	ATGCAT	1 cut(s)	1188
NspI	RCATGY	2 cut(s)	545, 2107
NspV	TTCGAA	2 cut(s)	884, 1647
PagI	TCATGA	1 cut(s)	691
PceI	AGGCCT	2 cut(s)	796, 1348
PctI	GAATGC	3 cut(s)	138, 1120, 1186
PfeI	GAWTC	5 cut(s)	786, 800, 959, 1810, 2139
PkrI	GCNGC	5 cut(s)	233, 817, 856, 1039, 2169
PleI	GAGTC	4 cut(s)	682, 838, 1060, 1932
PpsI	GAGTC	4 cut(s)	682, 838, 1060, 1932
PpuMI	RGGWCCY	1 cut(s)	256
PshBI	ATTAAT	2 cut(s)	356, 741
Psp124BI	GAGCTC	2 cut(s)	216, 1445
Psp1406I	AACGTT	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	5 cut(s)	314, 558, 1011, 1581, 2079
PspGI	CCWGG	5 cut(s)	314, 558, 1011, 1581, 2079
PspN4I	GGNNCC	3 cut(s)	257, 1331, 1669
PspPI	GGNCC	3 cut(s)	256, 329, 1744
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	1042
PsuI	RGATCY	2 cut(s)	1508, 2095
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	8 cut(s)	730, 901, 1142, 1409, 1618, 2023, 2053, 2295
RsaNI	GTAC	8 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294
RseI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
SacI	GAGCTC	2 cut(s)	216, 1445
SaqAI	TTAA	6 cut(s)	32, 356, 425, 741, 891, 1737
SatI	GCNGC	5 cut(s)	232, 816, 855, 1038, 2168
Sau3AI	GATC	8 cut(s)	201, 496, 745, 1368, 1508, 2095, 2172, 2244
Sau96I	GGNCC	3 cut(s)	256, 329, 1744
ScaI	AGTACT	2 cut(s)	2023, 2295
SchI	GAGTC	4 cut(s)	682, 839, 1061, 1932
ScrFI	CCNGG	6 cut(s)	316, 560, 1013, 1583, 1943, 2081
SduI	GDGCHC	5 cut(s)	216, 343, 1096, 1445, 1523
SexAI	ACCWGGT	1 cut(s)	1011
SfaNI	GCATC	3 cut(s)	645, 855, 1773
SfcI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
SfuI	TTCGAA	2 cut(s)	884, 1647
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SseBI	AGGCCT	2 cut(s)	796, 1348
SsiI	CCGC	7 cut(s)	38, 804, 1019, 1955, 1986, 2168, 2195
SspMI	CTAG	5 cut(s)	834, 963, 1266, 1337, 1562
SstI	GAGCTC	2 cut(s)	216, 1445
StuI	AGGCCT	2 cut(s)	796, 1348
StyD4I	CCNGG	6 cut(s)	314, 558, 1011, 1581, 1941, 2079
StyI	CCWWGG	2 cut(s)	393, 2056
TaaI	ACNGT	5 cut(s)	644, 909, 1543, 1981, 2026
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	200, 713, 884, 1647
TatI	WGTACW	3 cut(s)	1407, 2021, 2293
TauI	GCSGC	1 cut(s)	2170
TfiI	GAWTC	5 cut(s)	786, 800, 959, 1810, 2139
Tru1I	TTAA	6 cut(s)	32, 356, 425, 741, 891, 1737
Tru9I	TTAA	6 cut(s)	32, 356, 425, 741, 891, 1737
TscAI	CASTG	4 cut(s)	94, 1047, 1687, 2068
TseFI	GTSAC	4 cut(s)	14, 573, 1661, 1981
TseI	GCWGC	4 cut(s)	231, 815, 854, 1037
Tsp45I	GTSAC	4 cut(s)	14, 573, 1661, 1981
TspDTI	ATGAA	9 cut(s)	259, 530, 695, 996, 1485, 1746, 1823, 1853, 2249
TspGWI	ACGGA	3 cut(s)	536, 1680, 2253
TspRI	CASTG	4 cut(s)	94, 1047, 1687, 2068
VneI	GTGCAC	1 cut(s)	1092
VpaK11BI	GGWCC	1 cut(s)	256
VspI	ATTAAT	2 cut(s)	356, 741
XapI	RAATTY	5 cut(s)	380, 886, 1649, 1915, 2147
XbaI	TCTAGA	2 cut(s)	962, 1561
XceI	RCATGY	2 cut(s)	545, 2107
XmiI	GTMKAC	3 cut(s)	599, 1248, 2221
XspI	CTAG	5 cut(s)	834, 963, 1266, 1337, 1562
ZrmI	AGTACT	2 cut(s)	2023, 2295
Zsp2I	ATGCAT	1 cut(s)	1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.