AT5G13910

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016682
Physical Location & Seq
Reverse (-)
4482128 .. 4483247
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13910.1

Sequence Viewer

Length: 636 bp
ATGAACACAACATCATCAAAGAGCAAGAAGAAGCAAGACGATCAGGTTGGTACAAGGTTTCTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATTAGAGACCCAACTACGAAGGAGCGTCACTGGCTTGGCACTTTCGATACGGCGGAAGAAGCTGCCTTGGCCTACGATAGAGCTGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATGCCTCCTTCCTCATCCGTCACCTCCATTGTTTCTCCTGACGATCCTCCTCCTCCTCCACCTCCTCCTGCTCCTCCTAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCATCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGACAGTTACATGTTTGGTGGCTCTCAATCTTCGAATTCTTATTGCTATTCTAATGACAGTAGTAATGAGCTGCCTCCTCTCCCGAGCGACTTGTCGAATTCGTGTTATAGCCAACCACAGTGGACCTGGACCGGTGACGACTACTCGTCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGACTCTTTCCCTCAAGGTTTCAACTACTTTGGCTCCTAA

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

4.98

Isoelectric Point (pI)

71.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 19 - 68 4.4e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016682)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13910
fragaria_vesca FvH4_4g22310
malus_domestica MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica Prupe.1G212700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0428551
rosa_laevigata RLG00000007143
rosa_roxburghii Rroxscaffold_5G00370260
rosa_rugosa Rorug04G0226200
rosa_samantha Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana Rw4G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 275, 317
AcsI RAATTY 2 cut(s) 436, 499
AcuI CTGAAG 1 cut(s) 365
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 52, 557, 561
AflIII ACRYGT 2 cut(s) 206, 411
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 1 cut(s) 619
AhdI GACNNNNNGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 527
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 4 cut(s) 98, 164, 185, 472
AluI AGCT 4 cut(s) 98, 164, 185, 472
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 275, 317
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 2 cut(s) 77, 171
ApeKI GCWGC 4 cut(s) 95, 164, 185, 472
ApoI RAATTY 2 cut(s) 436, 499
AsiGI ACCGGT 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 192, 525, 531
AsuHPI GGTGA 3 cut(s) 79, 250, 548
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 3 cut(s) 192, 525, 531
BbrPI CACGTG 1 cut(s) 209
BbvI GCAGC 4 cut(s) 107, 151, 172, 459
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 529
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 96, 165, 186, 473
BlsI GCNGC 4 cut(s) 97, 166, 187, 474
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 3 cut(s) 192, 525, 531
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 3 cut(s) 192, 525, 531
BmiI GGNNCC 1 cut(s) 631
BmrFI CCNGG 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 594
BsaAI YACGTR 2 cut(s) 209, 559
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 80, 168
BsaWI WCCGGW 2 cut(s) 533, 589
BsaXI ACNNNNNCTCC 1 cut(s) 614
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 2 cut(s) 80, 168
BseGI GGATG 2 cut(s) 251, 359
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 90, 246, 543
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 6 cut(s) 276, 279, 282, 291, 300, 468
BseXI GCAGC 4 cut(s) 107, 151, 172, 459
BshFI GGCC 2 cut(s) 79, 173
BshTI ACCGGT 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 2 cut(s) 534, 590
BsmAI GTCTC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 2 cut(s) 79, 173
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 434
Bsp143I GATC 4 cut(s) 40, 280, 322, 394
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 79, 173
BspCNI CTCAG 3 cut(s) 91, 245, 544
BspLI GGNNCC 1 cut(s) 631
BspPI GGATC 2 cut(s) 275, 317
BspT104I TTCGAA 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 80, 168
BssMI GATC 4 cut(s) 40, 280, 322, 394
BssT1I CCWWGG 2 cut(s) 80, 168
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 407, 461, 522
BstBAI YACGTR 2 cut(s) 209, 559
BstBI TTCGAA 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 99, 232, 552
BstF5I GGATG 2 cut(s) 251, 359
BstKTI GATC 4 cut(s) 43, 283, 325, 397
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 40, 280, 322, 394
BstMWI GCNNNNNNNGC 3 cut(s) 133, 161, 170
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 2 cut(s) 241, 415
BstSCI CCNGG 1 cut(s) 527
BstSNI TACGTA 1 cut(s) 559
BstV1I GCAGC 4 cut(s) 107, 151, 172, 459
BsuRI GGCC 2 cut(s) 79, 173
BtsCI GGATG 2 cut(s) 251, 359
BtsIMutI CAGTG 3 cut(s) 130, 363, 527
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 3 cut(s) 192, 525, 531
CseI GACGC 1 cut(s) 116
Csp6I GTAC 3 cut(s) 51, 556, 560
CspAI ACCGGT 1 cut(s) 533
CspCI CAANNNNNGTGG 2 cut(s) 503, 538
CviAII CATG 4 cut(s) 196, 238, 337, 412
CviQI GTAC 3 cut(s) 51, 556, 560
DdeI CTNAG 3 cut(s) 99, 232, 552
DpnI GATC 4 cut(s) 42, 282, 324, 396
DpnII GATC 4 cut(s) 40, 280, 322, 394
DriI GACNNNNNGTC 1 cut(s) 547
Eam1105I GACNNNNNGTC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 170
Eco105I TACGTA 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 80, 168
Eco147I AGGCCT 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 192, 525, 531
Eco57I CTGAAG 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 484
EcoRI GAATTC 2 cut(s) 436, 499
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 2 cut(s) 80, 168
ErhI CCWWGG 2 cut(s) 80, 168
FaeI CATG 4 cut(s) 199, 241, 340, 415
FaiI YATR 6 cut(s) 197, 239, 338, 413, 510, 564
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 4 cut(s) 195, 237, 336, 411
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 4 cut(s) 96, 165, 186, 473
FokI GGATG 2 cut(s) 238, 346
Fsp4HI GCNGC 4 cut(s) 96, 165, 186, 473
FspBI CTAG 1 cut(s) 315
GluI GCNGC 4 cut(s) 96, 165, 186, 473
HaeIII GGCC 2 cut(s) 79, 173
HapII CCGG 2 cut(s) 534, 590
HgaI GACGC 1 cut(s) 116
Hin1II CATG 4 cut(s) 199, 241, 340, 415
HinfI GANTC 2 cut(s) 368, 599
HpaII CCGG 2 cut(s) 534, 590
HphI GGTGA 3 cut(s) 79, 250, 548
Hpy166II GTNNAC 3 cut(s) 229, 403, 525
Hpy188I TCNGA 3 cut(s) 235, 553, 598
Hpy188III TCNNGA 2 cut(s) 275, 484
Hpy8I GTNNAC 3 cut(s) 229, 403, 525
HpyAV CCTTC 3 cut(s) 69, 115, 255
HpyCH4III ACNGT 3 cut(s) 407, 461, 522
HpyCH4IV ACGT 2 cut(s) 208, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 161, 170
HpyF3I CTNAG 3 cut(s) 99, 232, 552
HpySE526I ACGT 2 cut(s) 208, 558
Hsp92II CATG 4 cut(s) 199, 241, 340, 415
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 40, 280, 322, 394
LmnI GCTCC 3 cut(s) 124, 313, 635
Lsp1109I GCAGC 4 cut(s) 107, 151, 172, 459
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 208, 558
MaeIII GTNAC 4 cut(s) 128, 256, 407, 536
MalI GATC 4 cut(s) 42, 282, 324, 396
MboI GATC 4 cut(s) 40, 280, 322, 394
MboII GAAGA 5 cut(s) 40, 84, 99, 170, 423
MluCI AATT 2 cut(s) 436, 499
MlyI GAGTC 2 cut(s) 362, 593
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 534, 590
MspR9I CCNGG 1 cut(s) 529
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 133, 161, 170
NdeII GATC 4 cut(s) 40, 280, 322, 394
NlaIII CATG 4 cut(s) 199, 241, 340, 415
NlaIV GGNNCC 1 cut(s) 631
NmuCI GTSAC 3 cut(s) 128, 256, 536
NspI RCATGY 2 cut(s) 241, 415
NspV TTCGAA 1 cut(s) 434
PceI AGGCCT 1 cut(s) 79
PciI ACATGT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PctI GAATGC 1 cut(s) 588
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 4 cut(s) 97, 166, 187, 474
PleI GAGTC 2 cut(s) 362, 593
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 2 cut(s) 362, 593
Ppu21I YACGTR 2 cut(s) 209, 559
PscI ACATGT 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 527
PspCI CACGTG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 631
PspPI GGNCC 3 cut(s) 192, 525, 531
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 3 cut(s) 52, 557, 561
RsaNI GTAC 3 cut(s) 51, 556, 560
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 4 cut(s) 96, 165, 186, 473
Sau3AI GATC 4 cut(s) 40, 280, 322, 394
Sau96I GGNCC 3 cut(s) 192, 525, 531
SchI GAGTC 2 cut(s) 362, 593
ScrFI CCNGG 1 cut(s) 529
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 3 cut(s) 192, 525, 531
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
SnaBI TACGTA 1 cut(s) 559
Sse9I AATT 2 cut(s) 436, 499
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 315
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 2 cut(s) 80, 168
TaaI ACNGT 3 cut(s) 407, 461, 522
TaiI ACGT 2 cut(s) 211, 561
TaqI TCGA 4 cut(s) 147, 330, 434, 497
TaqII GACCGA 1 cut(s) 180
TasI AATT 2 cut(s) 436, 499
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 3 cut(s) 137, 370, 527
TseFI GTSAC 3 cut(s) 128, 256, 536
TseI GCWGC 4 cut(s) 95, 164, 185, 472
Tsp45I GTSAC 3 cut(s) 128, 256, 536
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 3 cut(s) 137, 370, 527
VpaK11BI GGWCC 3 cut(s) 192, 525, 531
XapI RAATTY 2 cut(s) 436, 499
XceI RCATGY 2 cut(s) 241, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.