Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Reverse (-)

50482282 .. 50483094

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGTACTTCACCAACTCATCGTCAAAAGGGGGCAACTCTCCCTCCCCCACTTCCTCAAAGTCCAAGAAAAAACCGCAACAACAACAGAACCAGCAACCTCAGCAGCAACAACAGCAGGAGACGAGGTTCCTCGGAGTGAGGAGGAGGCCGTGGGGCCGATACGCCGCCGAAATAAGAGACCCTTCCACCAAGGAAAGGCATTGGCTCGGAACCTTCGACACAGCTGAGGAAGCTGCCTTGGCCTACGACCGAGCCGCCCGCTCCATGCGCGGCTCCAAAGCCAGAACCAACTTTGTCTACTCCGACATGCCTCACGGCTCGTCCGTCACCTCCATTATCTCACCGGACGAATCTCACCGCGACATGTCAGCCTTCTTCACCGTCCCTCCCCAACCCCAAACGCAGATGATCACCACCCACAACAACGGCCAGCAGCAGCAGCAGCCATTTTTCACTCAGGACCCGTTTGATGCCTACCCATTTTCCGGCGGGTCGTATGGCTCTTACGGACCCGGTTCGGGTTGTGCTGTTGGTGATGGAGCCGGGTCTCATGACAATGAGCTGCCACCTTTGCCTCCAAGTGTTTCCTCCACTGGTTATGGGCCTGGGGAAATTATGGGCTCGGACTTTGATGGGTTCTCGGAGCCTACTACCACACATGGGTTTGATTCCTTGGCCAGTGGGTCATACATGGGTTTTGACTCGAATGAGTTTGTGCAGCATAGCCCACTCTTTGGGAGCATGCCACCGGTTTCGGATTCCGGTGTCGATGGGTTTGATCTAGGCTCATCCTCTGCCTATTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

29.36

Weight (kDa)

5.17

Isoelectric Point (pI)

65.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	4.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	2 cut(s)	273, 363
AciI	CCGC	7 cut(s)	77, 168, 258, 262, 273, 361, 492
AcoI	YGGCCR	2 cut(s)	430, 678
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 663, 737
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	751
AjnI	CCWGG	1 cut(s)	607
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	227, 236, 565
AluI	AGCT	3 cut(s)	227, 236, 565
Alw26I	GTCTC	3 cut(s)	116, 174, 555
AoxI	GGCC	6 cut(s)	149, 157, 243, 430, 605, 678
ApeKI	GCWGC	8 cut(s)	106, 236, 436, 439, 442, 445, 565, 721
AsiGI	ACCGGT	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	4 cut(s)	157, 463, 512, 605
AsuC2I	CCSGG	2 cut(s)	516, 547
AsuHPI	GGTGA	7 cut(s)	4, 322, 336, 350, 373, 406, 548
AvaII	GGWCC	2 cut(s)	463, 512
BalI	TGGCCA	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	626
BbvCI	CCTCAGC	2 cut(s)	102, 228
BbvI	GCAGC	8 cut(s)	118, 223, 448, 451, 454, 457, 552, 733
BccI	CCATC	3 cut(s)	533, 629, 767
BceAI	ACGGC	3 cut(s)	136, 334, 445
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	516, 547
BcoDI	GTCTC	3 cut(s)	116, 174, 555
BfaI	CTAG	1 cut(s)	785
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	516, 547, 609
Bme18I	GGWCC	2 cut(s)	463, 512
BmgT120I	GGNCC	4 cut(s)	157, 463, 512, 605
BmiI	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 544, 648
BmrFI	CCNGG	3 cut(s)	516, 547, 609
BmsI	GCATC	1 cut(s)	463
Bpu10I	CCTNAGC	2 cut(s)	102, 228
BpuMI	CCSGG	2 cut(s)	516, 547
BsaI	GGTCTC	2 cut(s)	174, 555
BsaJI	CCNNGG	6 cut(s)	133, 152, 192, 240, 608, 675
BsaWI	WCCGGW	3 cut(s)	346, 751, 764
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 113, 143, 373, 403
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 663, 737
Bse118I	RCCGGY	1 cut(s)	751
Bse1I	ACTGG	2 cut(s)	601, 681
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	6 cut(s)	133, 152, 192, 240, 608, 675
BseGI	GGATG	1 cut(s)	791
BseLI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 663, 737
BseMII	CTCAG	3 cut(s)	116, 219, 473
BseNI	ACTGG	2 cut(s)	601, 681
BseRI	GAGGAG	2 cut(s)	157, 160
BseXI	GCAGC	8 cut(s)	118, 223, 448, 451, 454, 457, 552, 733
BsgI	GTGCAG	1 cut(s)	740
Bsh1236I	CGCG	2 cut(s)	273, 363
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	6 cut(s)	151, 159, 245, 432, 607, 680
BshTI	ACCGGT	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	6 cut(s)	347, 489, 516, 546, 752, 765
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 663, 737
BsmAI	GTCTC	3 cut(s)	116, 174, 555
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	6 cut(s)	151, 159, 245, 432, 607, 680
Bso31I	GGTCTC	2 cut(s)	174, 555
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	2 cut(s)	411, 781
BspACI	CCGC	7 cut(s)	77, 168, 258, 262, 273, 361, 492
BspANI	GGCC	6 cut(s)	151, 159, 245, 432, 607, 680
BspCNI	CTCAG	3 cut(s)	115, 220, 472
BspFNI	CGCG	2 cut(s)	273, 363
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 544, 648
BspTNI	GGTCTC	2 cut(s)	174, 555
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	601, 681
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	6 cut(s)	133, 152, 192, 240, 608, 675
BssMI	GATC	2 cut(s)	411, 781
BssT1I	CCWWGG	3 cut(s)	192, 240, 675
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	262, 434, 746
BstDEI	CTNAG	3 cut(s)	102, 228, 459
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	791
BstFNI	CGCG	2 cut(s)	273, 363
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	414, 784
BstMAI	GTCTC	3 cut(s)	116, 174, 555
BstMBI	GATC	2 cut(s)	411, 781
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 574
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	3 cut(s)	313, 370, 748
BstSCI	CCNGG	3 cut(s)	514, 545, 607
BstUI	CGCG	2 cut(s)	273, 363
BstV1I	GCAGC	8 cut(s)	118, 223, 448, 451, 454, 457, 552, 733
BsuRI	GGCC	6 cut(s)	151, 159, 245, 432, 607, 680
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	594, 688
Cac8I	GCNNGC	3 cut(s)	262, 434, 746
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	4 cut(s)	157, 463, 512, 605
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	751
CviAII	CATG	7 cut(s)	268, 310, 367, 554, 662, 694, 745
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	102, 228, 459
DpnI	GATC	2 cut(s)	413, 783
DpnII	GATC	2 cut(s)	411, 781
EaeI	YGGCCR	2 cut(s)	430, 678
Eco130I	CCWWGG	3 cut(s)	192, 240, 675
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	2 cut(s)	174, 555
Eco47I	GGWCC	2 cut(s)	463, 512
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	3 cut(s)	192, 240, 675
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	3 cut(s)	192, 240, 675
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	7 cut(s)	271, 313, 370, 557, 665, 697, 748
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	7 cut(s)	267, 309, 366, 553, 661, 693, 744
FauI	CCCGC	2 cut(s)	269, 485
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	1 cut(s)	778
FriOI	GRGCYC	1 cut(s)	626
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	272
HaeIII	GGCC	6 cut(s)	151, 159, 245, 432, 607, 680
HapII	CCGG	6 cut(s)	347, 489, 516, 546, 752, 765
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	7 cut(s)	271, 313, 370, 557, 665, 697, 748
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	353, 671, 704, 761
HpaII	CCGG	6 cut(s)	347, 489, 516, 546, 752, 765
HphI	GGTGA	7 cut(s)	4, 322, 336, 350, 373, 406, 548
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	6 cut(s)	137, 212, 307, 628, 646, 760
Hpy188III	TCNNGA	2 cut(s)	461, 554
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	195, 226, 385
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 574
HpyF3I	CTNAG	3 cut(s)	102, 228, 459
Hsp92II	CATG	7 cut(s)	271, 313, 370, 557, 665, 697, 748
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	411, 781
LmnI	GCTCC	5 cut(s)	269, 281, 542, 646, 741
Lsp1109I	GCAGC	8 cut(s)	118, 223, 448, 451, 454, 457, 552, 733
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	785
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	413, 783
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	411, 781
MboII	GAAGA	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	626
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	1 cut(s)	615
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	811
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	6 cut(s)	347, 489, 516, 546, 752, 765
MspR9I	CCNGG	3 cut(s)	516, 547, 609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	2 cut(s)	273, 363
MwoI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 574
NciI	CCSGG	2 cut(s)	516, 547
NdeII	GATC	2 cut(s)	411, 781
NlaIII	CATG	7 cut(s)	271, 313, 370, 557, 665, 697, 748
NlaIV	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 544, 648
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	3 cut(s)	313, 370, 748
PaeI	GCATGC	1 cut(s)	748
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 324
PfeI	GAWTC	3 cut(s)	353, 671, 761
PflMI	CCANNNNNTGG	1 cut(s)	737
PinAI	ACCGGT	1 cut(s)	751
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	463
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 544, 648
PspPI	GGNCC	4 cut(s)	157, 463, 512, 605
PspPPI	RGGWCCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	811
Sau3AI	GATC	2 cut(s)	411, 781
Sau96I	GGNCC	4 cut(s)	157, 463, 512, 605
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	3 cut(s)	516, 547, 609
SduI	GDGCHC	1 cut(s)	626
SetI	ASST	8 cut(s)	103, 131, 218, 229, 238, 335, 567, 574
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	2 cut(s)	463, 512
SmiMI	CAYNNNNRTG	1 cut(s)	558
SphI	GCATGC	1 cut(s)	748
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	7 cut(s)	77, 168, 258, 262, 273, 361, 492
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	3 cut(s)	514, 545, 607
StyI	CCWWGG	3 cut(s)	192, 240, 675
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	3 cut(s)	219, 707, 771
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	615
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	3 cut(s)	170, 260, 276
TfiI	GAWTC	3 cut(s)	353, 671, 761
Tru1I	TTAA	1 cut(s)	811
Tru9I	TTAA	1 cut(s)	811
TscAI	CASTG	2 cut(s)	601, 688
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	8 cut(s)	106, 236, 436, 439, 442, 445, 565, 721
Tsp45I	GTSAC	1 cut(s)	328
TspGWI	ACGGA	2 cut(s)	316, 525
TspRI	CASTG	2 cut(s)	601, 688
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	463, 512
XceI	RCATGY	3 cut(s)	313, 370, 748
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.