Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Reverse (-)

56674808 .. 56675885

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG305400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGTACTTCACCAACTCATCGTCAAAAGGCGGCAACTCTCCCTCCCCCACTTCCTCAAAGTCCAAGAAAAAACCGCAACAACAACAGAACCAGCAACCTCAGCAGCAACAACAGCAGGAGACGAGGTTCCTCGGAGTGAGGAGGAGGCCGTGGGGCCGATACGCCGCAGAAATAAGAGACCCTTCCACCAAGGAAAGGCATTGGCTCGGAACCTTCGACACAGCTGAGGAAGCTGCCTTGGCCTACGACCGAGCCGCCCGCTCCATGCGCGGCTCCAAAGCCAGAACCAACTTTGTCTACTCCGACATGCCTCACGGCTCGTCCGTCACCTCCATTATCTCACCGGACGAATCTCACCGTGACATGTCAGCCTTCTTCACCGCCCCTCCCCAACCCCAAACGCAGATGATCACCACCCACAACAACGGCCAGCAGCAGCAGCAGCAGCCATTTTTCACTCAGGACCCGTTTGATGCCTACCCATTTTCCGGCGGGTCGTATGGCTCTTACGGACCCGGTTCGGGTTGTGCTGTTGGTGATGGAGCCGGGTCTCATGACAATGAGCTGCCACCTTTGCCTCCAAGTGTTTCCTCCACTGGTTATGGGCCTGGGGAAATTATGGGCTCGGACTTTGATGGGTTCTCGGAGCCTACTACCACACATGGGTTTGATTCCTTGGCCAGTGGGTCATACATGGGTTTTGACTCGAATGAGTTTGTGCAGCACAGCCCACTCTTTGGGAGCATGCCACCGGTTTCGGATTCCGGTGTCGATGGGTTTGATCTAGGCTCATCCTCTGCCTATTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

271

Amino Acids

29.46

Weight (kDa)

5.17

Isoelectric Point (pI)

65.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	4.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	273
AciI	CCGC	8 cut(s)	33, 77, 168, 258, 262, 273, 384, 495
AcoI	YGGCCR	2 cut(s)	430, 681
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	5 cut(s)	198, 491, 524, 666, 740
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	610
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	227, 236, 568
AluI	AGCT	3 cut(s)	227, 236, 568
Alw26I	GTCTC	3 cut(s)	116, 174, 558
AoxI	GGCC	6 cut(s)	149, 157, 243, 430, 608, 681
ApeKI	GCWGC	9 cut(s)	106, 236, 436, 439, 442, 445, 448, 568, 724
AsiGI	ACCGGT	1 cut(s)	754
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	4 cut(s)	157, 466, 515, 608
AsuC2I	CCSGG	2 cut(s)	519, 550
AsuHPI	GGTGA	7 cut(s)	4, 322, 336, 350, 373, 406, 551
AvaII	GGWCC	2 cut(s)	466, 515
BalI	TGGCCA	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	629
BbvCI	CCTCAGC	2 cut(s)	102, 228
BbvI	GCAGC	9 cut(s)	118, 223, 448, 451, 454, 457, 460, 555, 736
BccI	CCATC	3 cut(s)	536, 632, 770
BceAI	ACGGC	3 cut(s)	136, 334, 445
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	519, 550
BcoDI	GTCTC	3 cut(s)	116, 174, 558
BfaI	CTAG	1 cut(s)	788
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	519, 550, 612
Bme18I	GGWCC	2 cut(s)	466, 515
BmgT120I	GGNCC	4 cut(s)	157, 466, 515, 608
BmiI	GGNNCC	8 cut(s)	131, 158, 214, 277, 468, 517, 547, 651
BmrFI	CCNGG	3 cut(s)	519, 550, 612
BmsI	GCATC	1 cut(s)	466
Bpu10I	CCTNAGC	2 cut(s)	102, 228
BpuMI	CCSGG	2 cut(s)	519, 550
BsaI	GGTCTC	2 cut(s)	174, 558
BsaJI	CCNNGG	6 cut(s)	133, 152, 192, 240, 611, 678
BsaWI	WCCGGW	3 cut(s)	346, 754, 767
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 113, 143, 373, 403
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 491, 524, 666, 740
Bse118I	RCCGGY	1 cut(s)	754
Bse1I	ACTGG	2 cut(s)	604, 684
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	6 cut(s)	133, 152, 192, 240, 611, 678
BseGI	GGATG	1 cut(s)	794
BseLI	CCNNNNNNNGG	5 cut(s)	198, 491, 524, 666, 740
BseMII	CTCAG	3 cut(s)	116, 219, 476
BseNI	ACTGG	2 cut(s)	604, 684
BseRI	GAGGAG	2 cut(s)	157, 160
BseXI	GCAGC	9 cut(s)	118, 223, 448, 451, 454, 457, 460, 555, 736
BsgI	GTGCAG	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	6 cut(s)	151, 159, 245, 432, 610, 683
BshTI	ACCGGT	1 cut(s)	754
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	6 cut(s)	347, 492, 519, 549, 755, 768
BslI	CCNNNNNNNGG	5 cut(s)	198, 491, 524, 666, 740
BsmAI	GTCTC	3 cut(s)	116, 174, 558
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	151, 159, 245, 432, 610, 683
Bso31I	GGTCTC	2 cut(s)	174, 558
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	411, 784
BspACI	CCGC	8 cut(s)	33, 77, 168, 258, 262, 273, 384, 495
BspANI	GGCC	6 cut(s)	151, 159, 245, 432, 610, 683
BspCNI	CTCAG	3 cut(s)	115, 220, 475
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	8 cut(s)	131, 158, 214, 277, 468, 517, 547, 651
BspTNI	GGTCTC	2 cut(s)	174, 558
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	604, 684
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	6 cut(s)	133, 152, 192, 240, 611, 678
BssMI	GATC	2 cut(s)	411, 784
BssT1I	CCWWGG	3 cut(s)	192, 240, 678
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	262, 434, 749
BstDEI	CTNAG	3 cut(s)	102, 228, 462
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	794
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	414, 787
BstMAI	GTCTC	3 cut(s)	116, 174, 558
BstMBI	GATC	2 cut(s)	411, 784
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	9 cut(s)	103, 115, 233, 242, 270, 442, 445, 448, 577
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	3 cut(s)	313, 370, 751
BstSCI	CCNGG	3 cut(s)	517, 548, 610
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	9 cut(s)	118, 223, 448, 451, 454, 457, 460, 555, 736
BsuRI	GGCC	6 cut(s)	151, 159, 245, 432, 610, 683
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	794
BtsIMutI	CAGTG	2 cut(s)	597, 691
Cac8I	GCNNGC	3 cut(s)	262, 434, 749
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	754
Cfr13I	GGNCC	4 cut(s)	157, 466, 515, 608
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	754
CviAII	CATG	7 cut(s)	268, 310, 367, 557, 665, 697, 748
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	102, 228, 462
DpnI	GATC	2 cut(s)	413, 786
DpnII	GATC	2 cut(s)	411, 784
EaeI	YGGCCR	2 cut(s)	430, 681
Eco130I	CCWWGG	3 cut(s)	192, 240, 678
Eco24I	GRGCYC	1 cut(s)	629
Eco31I	GGTCTC	2 cut(s)	174, 558
Eco47I	GGWCC	2 cut(s)	466, 515
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	192, 240, 678
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	3 cut(s)	192, 240, 678
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	7 cut(s)	271, 313, 370, 560, 668, 700, 751
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	7 cut(s)	267, 309, 366, 556, 664, 696, 747
FauI	CCCGC	2 cut(s)	269, 488
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	1 cut(s)	629
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	272
HaeIII	GGCC	6 cut(s)	151, 159, 245, 432, 610, 683
HapII	CCGG	6 cut(s)	347, 492, 519, 549, 755, 768
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	7 cut(s)	271, 313, 370, 560, 668, 700, 751
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	353, 674, 707, 764
HpaII	CCGG	6 cut(s)	347, 492, 519, 549, 755, 768
HphI	GGTGA	7 cut(s)	4, 322, 336, 350, 373, 406, 551
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	6 cut(s)	137, 212, 307, 631, 649, 763
Hpy188III	TCNNGA	2 cut(s)	464, 557
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	195, 226, 385
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	724
HpyF10VI	GCNNNNNNNGC	9 cut(s)	103, 115, 233, 242, 270, 442, 445, 448, 577
HpyF3I	CTNAG	3 cut(s)	102, 228, 462
Hsp92II	CATG	7 cut(s)	271, 313, 370, 560, 668, 700, 751
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	411, 784
LmnI	GCTCC	5 cut(s)	269, 281, 545, 649, 744
Lsp1109I	GCAGC	9 cut(s)	118, 223, 448, 451, 454, 457, 460, 555, 736
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	788
MaeIII	GTNAC	2 cut(s)	328, 362
MalI	GATC	2 cut(s)	413, 786
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	411, 784
MboII	GAAGA	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	1 cut(s)	618
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	814
MslI	CAYNNNNRTG	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	6 cut(s)	347, 492, 519, 549, 755, 768
MspR9I	CCNGG	3 cut(s)	519, 550, 612
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	9 cut(s)	103, 115, 233, 242, 270, 442, 445, 448, 577
NciI	CCSGG	2 cut(s)	519, 550
NdeII	GATC	2 cut(s)	411, 784
NlaIII	CATG	7 cut(s)	271, 313, 370, 560, 668, 700, 751
NlaIV	GGNNCC	8 cut(s)	131, 158, 214, 277, 468, 517, 547, 651
NmuCI	GTSAC	2 cut(s)	328, 362
NspI	RCATGY	3 cut(s)	313, 370, 751
PaeI	GCATGC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	556
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 324
PfeI	GAWTC	3 cut(s)	353, 674, 764
PflMI	CCANNNNNTGG	1 cut(s)	740
PinAI	ACCGGT	1 cut(s)	754
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
PpuMI	RGGWCCY	1 cut(s)	466
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	8 cut(s)	131, 158, 214, 277, 468, 517, 547, 651
PspPI	GGNCC	4 cut(s)	157, 466, 515, 608
PspPPI	RGGWCCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	814
Sau3AI	GATC	2 cut(s)	411, 784
Sau96I	GGNCC	4 cut(s)	157, 466, 515, 608
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	519, 550, 612
SduI	GDGCHC	1 cut(s)	629
SetI	ASST	8 cut(s)	103, 131, 218, 229, 238, 335, 570, 577
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	2 cut(s)	466, 515
SmiMI	CAYNNNNRTG	1 cut(s)	561
SphI	GCATGC	1 cut(s)	751
Sse9I	AATT	1 cut(s)	618
SsiI	CCGC	8 cut(s)	33, 77, 168, 258, 262, 273, 384, 495
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	3 cut(s)	517, 548, 610
StyI	CCWWGG	3 cut(s)	192, 240, 678
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	3 cut(s)	219, 710, 774
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	618
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	4 cut(s)	36, 170, 260, 276
TfiI	GAWTC	3 cut(s)	353, 674, 764
Tru1I	TTAA	1 cut(s)	814
Tru9I	TTAA	1 cut(s)	814
TscAI	CASTG	2 cut(s)	604, 691
TseFI	GTSAC	2 cut(s)	328, 362
TseI	GCWGC	9 cut(s)	106, 236, 436, 439, 442, 445, 448, 568, 724
Tsp45I	GTSAC	2 cut(s)	328, 362
TspGWI	ACGGA	2 cut(s)	316, 528
TspRI	CASTG	2 cut(s)	604, 691
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	466, 515
XceI	RCATGY	3 cut(s)	313, 370, 751
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	788
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.