Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Forward (+)

11016774 .. 11017610

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1143300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGACTTCTTCACCAACTCACCTTCTAAATCAAACAACTCGCCACCTTCTTCAACCAAAACCAAAAGAAAGCAACAACGGCAGCAAACCCAGCAACCACAACAAACCCAGCAGGAGACTAGGTTTCTTGGAGTGAGGAGAAGGCCGTGGGGCAGATATGCGGCCGAGATACGAGACCCTTCGACCAAAGAGAGGCATTGGCTCGGAACCTTTGACACGGCGGAGGAGGCCGCCTTGGCCTACGACCGATCCGCTCGCTCCATGCGCGGTTCCAAGGCTCGAACCAACTTTGTCTACTCGGACATGCCACATGGCTCGTCTGTCACCTCCATTATCTCACCCGAGGAAGACATGTCAGCGTTCTTCACCACCCCACTTCCCCAAACCCACGCCCAATCCCAAACACACACTCAGCAGTCCTTCTTCACTCATCAGGACCCATTTGATGCCTACTCATTCTCTGGAAGTTCATCAGCAGAGTATGAAAGCGGGTCTTACGTGCCCGCTTTTGGTGTTGTTGCTGATGAATCCGGGTTACAGTCTCAATCTCACACTCACGAGCTACCACCTTTGCCTGCTTGTGTCTCCTCCTCCACTTGTTATGGGCCCGAAGGCGGCATTATGAGCTCGGACGGAGTTTGGAATGAGTCAGGCTTTTACGAGTTTTCAGACCCCACGACGAACAATGGACTGGACTCATTGGTGAGTGGGTCCTATGTGGGCTTTGACTCGAACGAGTTTGTGCAGCACAGCCCATTGTTTGGGAGCATGCCACCTGTCTCCGAAGCGGGTATCGATGGGTTTGATTTGGGTTCATCCTCTGCCTATTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

279

Amino Acids

30.54

Weight (kDa)

5.03

Isoelectric Point (pI)

73.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	41 - 90	8.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	267
AciI	CCGC	9 cut(s)	161, 221, 231, 252, 267, 489, 504, 615, 788
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	162
AfiI	CCNNNNNNNGG	4 cut(s)	192, 509, 614, 761
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	54, 832
AluBI	AGCT	2 cut(s)	562, 627
AluI	AGCT	2 cut(s)	562, 627
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	5 cut(s)	110, 168, 546, 589, 784
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	5 cut(s)	143, 162, 228, 237, 605
ApaI	GGGCCC	1 cut(s)	609
ApeKI	GCWGC	2 cut(s)	82, 745
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	436, 605, 606, 711
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	6 cut(s)	4, 12, 316, 330, 358, 715
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	436, 711
BaeGI	GKGCMC	2 cut(s)	504, 609
BanII	GRGCYC	2 cut(s)	609, 629
BauI	CACGAG	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	2 cut(s)	94, 757
BccI	CCATC	1 cut(s)	791
BceAI	ACGGC	3 cut(s)	95, 130, 234
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	5 cut(s)	110, 168, 546, 589, 784
BfaI	CTAG	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	5 cut(s)	83, 162, 231, 616, 746
BlsI	GCNGC	5 cut(s)	84, 163, 232, 617, 747
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	2 cut(s)	436, 711
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	4 cut(s)	436, 605, 606, 711
BmiI	GGNNCC	5 cut(s)	208, 271, 438, 607, 712
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	4 cut(s)	146, 234, 273, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 509, 614, 761
Bse1I	ACTGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	4 cut(s)	146, 234, 273, 342
BseGI	GGATG	1 cut(s)	815
BseLI	CCNNNNNNNGG	4 cut(s)	192, 509, 614, 761
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	4 cut(s)	151, 239, 577, 580
BseSI	GKGCMC	2 cut(s)	504, 609
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	94, 757
BseYI	CCCAGC	2 cut(s)	90, 108
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	2 cut(s)	165, 247
BshFI	GGCC	5 cut(s)	145, 164, 230, 239, 607
BshVI	ATCGAT	1 cut(s)	795
BsiEI	CGRYCG	2 cut(s)	165, 247
BsiHKAI	GWGCWC	1 cut(s)	629
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	4 cut(s)	192, 509, 614, 761
BsmAI	GTCTC	5 cut(s)	110, 168, 546, 589, 784
BsnI	GGCC	5 cut(s)	145, 164, 230, 239, 607
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	341
Bsp120I	GGGCCC	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	504, 609, 629
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	9 cut(s)	161, 221, 231, 252, 267, 489, 504, 615, 788
BspANI	GGCC	5 cut(s)	145, 164, 230, 239, 607
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	795
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	208, 271, 438, 607, 712
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	4 cut(s)	146, 234, 273, 342
BssMI	GATC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	2 cut(s)	234, 273
Bst2BI	CACGAG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	4 cut(s)	256, 504, 576, 770
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	815
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	5 cut(s)	110, 168, 546, 589, 784
BstMBI	GATC	1 cut(s)	248
BstMCI	CGRYCG	2 cut(s)	165, 247
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 91, 227, 236, 264, 624
BstNSI	RCATGY	3 cut(s)	307, 355, 772
BstSCI	CCNGG	1 cut(s)	530
BstSLI	GKGCMC	2 cut(s)	504, 609
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	94, 757
BstV2I	GAAGAC	1 cut(s)	354
BstZI	CGGCCG	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	145, 164, 230, 239, 607
BsuTUI	ATCGAT	1 cut(s)	795
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	815
Cac8I	GCNNGC	4 cut(s)	256, 504, 576, 770
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	4 cut(s)	436, 605, 606, 711
ClaI	ATCGAT	1 cut(s)	795
CviAII	CATG	5 cut(s)	262, 304, 311, 352, 769
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	627
EclXI	CGGCCG	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	234, 273
Eco24I	GRGCYC	2 cut(s)	609, 629
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	436, 711
Eco52I	CGGCCG	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	436, 711
EcoT14I	CCWWGG	2 cut(s)	234, 273
EcoT38I	GRGCYC	2 cut(s)	609, 629
ErhI	CCWWGG	2 cut(s)	234, 273
FaeI	CATG	5 cut(s)	265, 307, 314, 355, 772
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FatI	CATG	5 cut(s)	261, 303, 310, 351, 768
FauI	CCCGC	3 cut(s)	482, 511, 781
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	83, 162, 231, 616, 746
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	2 cut(s)	609, 629
Fsp4HI	GCNGC	5 cut(s)	83, 162, 231, 616, 746
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	83, 162, 231, 616, 746
GsaI	CCCAGC	2 cut(s)	94, 112
HaeIII	GGCC	5 cut(s)	145, 164, 230, 239, 607
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	265, 307, 314, 355, 772
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	4 cut(s)	527, 647, 695, 728
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	6 cut(s)	4, 12, 316, 330, 358, 715
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	206, 301, 631, 670, 784
Hpy188III	TCNNGA	3 cut(s)	434, 462, 557
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	6 cut(s)	33, 57, 135, 189, 430, 605
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 91, 227, 236, 264, 624
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	5 cut(s)	265, 307, 314, 355, 772
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	263, 765
Lsp1109I	GCAGC	2 cut(s)	94, 757
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	322, 534
MalI	GATC	1 cut(s)	250
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	1 cut(s)	248
MboII	GAAGA	4 cut(s)	42, 355, 359, 415
MhlI	GDGCHC	3 cut(s)	504, 609, 629
MlyI	GAGTC	3 cut(s)	656, 689, 722
MnlI	CCTC	9 cut(s)	129, 186, 217, 220, 337, 337, 598, 601, 829
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	6 cut(s)	79, 91, 227, 236, 264, 624
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	265, 307, 314, 355, 772
NlaIV	GGNNCC	5 cut(s)	208, 271, 438, 607, 712
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	3 cut(s)	307, 355, 772
PaeI	GCATGC	1 cut(s)	772
PciI	ACATGT	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	761
PkrI	GCNGC	5 cut(s)	84, 163, 232, 617, 747
PleI	GAGTC	3 cut(s)	655, 689, 722
PpsI	GAGTC	3 cut(s)	655, 689, 722
Ppu21I	YACGTR	1 cut(s)	499
PpuMI	RGGWCCY	2 cut(s)	436, 711
PscI	ACATGT	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	629
Psp5II	RGGWCCY	2 cut(s)	436, 711
PspFI	CCCAGC	2 cut(s)	90, 108
PspN4I	GGNNCC	5 cut(s)	208, 271, 438, 607, 712
PspOMI	GGGCCC	1 cut(s)	605
PspPI	GGNCC	4 cut(s)	436, 605, 606, 711
PspPPI	RGGWCCY	2 cut(s)	436, 711
SacI	GAGCTC	1 cut(s)	629
SatI	GCNGC	5 cut(s)	83, 162, 231, 616, 746
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	4 cut(s)	436, 605, 606, 711
SchI	GAGTC	3 cut(s)	656, 689, 722
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	3 cut(s)	504, 609, 629
SfaNI	GCATC	1 cut(s)	436
SfiI	GGCCNNNNNGGCC	1 cut(s)	236
SinI	GGWCC	2 cut(s)	436, 711
SphI	GCATGC	1 cut(s)	772
SsiI	CCGC	9 cut(s)	161, 221, 231, 252, 267, 489, 504, 615, 788
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	234, 273
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	4 cut(s)	182, 280, 731, 795
TaqII	GACCGA	1 cut(s)	261
TauI	GCSGC	3 cut(s)	164, 233, 618
TfiI	GAWTC	1 cut(s)	527
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	82, 745
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	459, 498, 540, 804
TspGWI	ACGGA	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	761
VpaK11BI	GGWCC	2 cut(s)	436, 711
XceI	RCATGY	3 cut(s)	307, 355, 772
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.