Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Reverse (-)

25195013 .. 25196102

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGTACTTCATGACCAACTCACCGTCAAAAGGCGGCAACTCACCCTCCTCCTCTTCCTCAAAGTCCAAGAAGAAACCTCAGCAACAACAACCTCAGCAGCAACAGCAACAACAACAGGAGACGAGGTTCCTCGGAGTGAGGAGGAGGCCATGGGGCAGATACGCCGCCGAAATAAGAGACCCTTCCACCAAGGAAAGGCATTGGCTCGGAACCTTCGACACCGCCGAGGAAGCTGCCTTGGCCTACGACCGAGCCGCCCGCTCCATGCGTGGCTCCAAAGCCAGAACCAACTTCGTCTACTCCGACATGCCTCACGGCTCCTCCGTCACCTCCATTATCTCACCGGACGAATCACAGCGCGACATGTCTGCCTTCTTCACCGCTCCTCTCCAACCCCAAACGCAGATGATCACCACCCACAACAACAACAACAACAACAACAACCACCACCACCAGCAGCAGCCATTTTTCACTCAGGACCCGTTTGAAGCCTACCCGTTTTCTGGCGGGTCGTATGGCTCTTATGGACCCGGGTCGGGCTGTGGTAATGGTGATGGAGCCGGGTCTCATGACAATGAGCTGCCACCTTTGCCTCCAAGTGTCTCCTCCACTTGTTATGGGCCTGGGGAAGTTATGGGCTCAGACTTTTACGGGTTCTCCGAGCCCACTACTACACAAGGCTTTGATTCCATTGCCAGTGGGTCGTACATGGGCTTTGACTCGAATGAGTTTGTGCAGCACAGCCCACTCTTTGGGAGCATGCCGCCGGTAACGGATTCCGGTATCGATGGGTTTGATCTAGGCTCATCATCTGCCTATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

30.24

Weight (kDa)

5.42

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	4.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccBSI	CCGCTC	2 cut(s)	264, 386
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	363
AciI	CCGC	8 cut(s)	36, 168, 225, 258, 262, 384, 510, 767
AfaI	GTAC	2 cut(s)	8, 710
AfiI	CCNNNNNNNGG	5 cut(s)	32, 198, 506, 539, 755
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	625
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	236, 583
AluI	AGCT	2 cut(s)	236, 583
Alw26I	GTCTC	4 cut(s)	116, 174, 573, 610
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	3 cut(s)	149, 243, 623
ApeKI	GCWGC	6 cut(s)	100, 236, 460, 463, 583, 739
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	481, 530, 623
AsuC2I	CCSGG	3 cut(s)	534, 535, 565
AsuHPI	GGTGA	7 cut(s)	15, 36, 322, 336, 373, 406, 566
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	2 cut(s)	481, 530
BanII	GRGCYC	2 cut(s)	644, 669
BbvCI	CCTCAGC	2 cut(s)	81, 96
BbvI	GCAGC	6 cut(s)	112, 223, 472, 475, 570, 751
BccI	CCATC	2 cut(s)	551, 785
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 353, 387
BciT130I	CCWGG	1 cut(s)	627
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	3 cut(s)	534, 535, 565
BcoDI	GTCTC	4 cut(s)	116, 174, 573, 610
BfaI	CTAG	1 cut(s)	803
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	4 cut(s)	534, 535, 565, 627
Bme18I	GGWCC	2 cut(s)	481, 530
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	481, 530, 623
BmiI	GGNNCC	7 cut(s)	131, 214, 277, 322, 483, 532, 562
BmrFI	CCNGG	4 cut(s)	534, 535, 565, 627
BoxI	GACNNNNGTC	1 cut(s)	535
Bpu10I	CCTNAGC	2 cut(s)	81, 96
BpuMI	CCSGG	3 cut(s)	534, 535, 565
Bsa29I	ATCGAT	1 cut(s)	789
BsaI	GGTCTC	2 cut(s)	174, 573
BsaJI	CCNNGG	7 cut(s)	133, 152, 192, 228, 240, 533, 626
BsaWI	WCCGGW	2 cut(s)	346, 782
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 113, 143, 308, 338, 644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 198, 506, 539, 755
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	7 cut(s)	133, 152, 192, 228, 240, 533, 626
BseLI	CCNNNNNNNGG	5 cut(s)	32, 198, 506, 539, 755
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	4 cut(s)	95, 110, 491, 657
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	7 cut(s)	40, 43, 157, 160, 313, 378, 598
BseXI	GCAGC	6 cut(s)	112, 223, 472, 475, 570, 751
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	151, 245, 625
BshVI	ATCGAT	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	5 cut(s)	347, 534, 564, 770, 783
BslI	CCNNNNNNNGG	5 cut(s)	32, 198, 506, 539, 755
BsmAI	GTCTC	4 cut(s)	116, 174, 573, 610
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	151, 245, 625
Bso31I	GGTCTC	2 cut(s)	174, 573
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	644, 669
Bsp143I	GATC	2 cut(s)	411, 799
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	8 cut(s)	36, 168, 225, 258, 262, 384, 510, 767
BspANI	GGCC	3 cut(s)	151, 245, 625
BspCNI	CTCAG	4 cut(s)	94, 109, 490, 656
BspDI	ATCGAT	1 cut(s)	789
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	2 cut(s)	12, 571
BspLI	GGNNCC	7 cut(s)	131, 214, 277, 322, 483, 532, 562
BspTNI	GGTCTC	2 cut(s)	174, 573
BsrBI	CCGCTC	2 cut(s)	264, 386
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	7 cut(s)	133, 152, 192, 228, 240, 533, 626
BssMI	GATC	2 cut(s)	411, 799
BssT1I	CCWWGG	3 cut(s)	152, 192, 240
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	262, 764
BstDEI	CTNAG	4 cut(s)	81, 96, 477, 643
BstDSI	CCRYGG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	414, 802
BstMAI	GTCTC	4 cut(s)	116, 174, 573, 610
BstMBI	GATC	2 cut(s)	411, 799
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 233, 242, 592
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	3 cut(s)	313, 370, 766
BstPAI	GACNNNNGTC	1 cut(s)	535
BstSCI	CCNGG	4 cut(s)	532, 533, 563, 625
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	6 cut(s)	112, 223, 472, 475, 570, 751
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	3 cut(s)	151, 245, 625
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	262, 764
CciI	TCATGA	2 cut(s)	12, 571
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	481, 530, 623
Cfr9I	CCCGGG	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	789
Csp6I	GTAC	2 cut(s)	7, 709
CviAII	CATG	8 cut(s)	13, 153, 268, 310, 367, 572, 712, 763
CviQI	GTAC	2 cut(s)	7, 709
DdeI	CTNAG	4 cut(s)	81, 96, 477, 643
DpnI	GATC	2 cut(s)	413, 801
DpnII	GATC	2 cut(s)	411, 799
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	3 cut(s)	152, 192, 240
Eco24I	GRGCYC	2 cut(s)	644, 669
Eco31I	GGTCTC	2 cut(s)	174, 573
Eco47I	GGWCC	2 cut(s)	481, 530
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	3 cut(s)	152, 192, 240
EcoT38I	GRGCYC	2 cut(s)	644, 669
ErhI	CCWWGG	3 cut(s)	152, 192, 240
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	8 cut(s)	16, 156, 271, 313, 370, 575, 715, 766
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	8 cut(s)	12, 152, 267, 309, 366, 571, 711, 762
FauI	CCCGC	2 cut(s)	269, 503
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	300
FriOI	GRGCYC	2 cut(s)	644, 669
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	1 cut(s)	362
HaeIII	GGCC	3 cut(s)	151, 245, 625
HapII	CCGG	5 cut(s)	347, 534, 564, 770, 783
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	8 cut(s)	16, 156, 271, 313, 370, 575, 715, 766
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	353, 689, 722, 779
HpaII	CCGG	5 cut(s)	347, 534, 564, 770, 783
HphI	GGTGA	7 cut(s)	15, 36, 322, 336, 373, 406, 566
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	137, 212, 307, 646, 664
Hpy188III	TCNNGA	3 cut(s)	13, 479, 572
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	195, 226, 385
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 233, 242, 592
HpyF3I	CTNAG	4 cut(s)	81, 96, 477, 643
Hsp92II	CATG	8 cut(s)	16, 156, 271, 313, 370, 575, 715, 766
HspAI	GCGC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	411, 799
LmnI	GCTCC	6 cut(s)	269, 281, 326, 391, 560, 759
Lsp1109I	GCAGC	6 cut(s)	112, 223, 472, 475, 570, 751
MaeI	CTAG	1 cut(s)	803
MaeIII	GTNAC	2 cut(s)	328, 772
MalI	GATC	2 cut(s)	413, 801
MbiI	CCGCTC	2 cut(s)	264, 386
MboI	GATC	2 cut(s)	411, 799
MboII	GAAGA	3 cut(s)	48, 85, 370
MhlI	GDGCHC	2 cut(s)	644, 669
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	330, 418
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	5 cut(s)	347, 534, 564, 770, 783
MspR9I	CCNGG	4 cut(s)	534, 535, 565, 627
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	106, 233, 242, 592
NciI	CCSGG	3 cut(s)	534, 535, 565
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	411, 799
NlaIII	CATG	8 cut(s)	16, 156, 271, 313, 370, 575, 715, 766
NlaIV	GGNNCC	7 cut(s)	131, 214, 277, 322, 483, 532, 562
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	3 cut(s)	313, 370, 766
PaeI	GCATGC	1 cut(s)	766
PagI	TCATGA	2 cut(s)	12, 571
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	5 cut(s)	216, 225, 303, 324, 660
PfeI	GAWTC	3 cut(s)	353, 689, 779
PflMI	CCANNNNNTGG	1 cut(s)	755
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
PpuMI	RGGWCCY	1 cut(s)	481
PscI	ACATGT	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	7 cut(s)	131, 214, 277, 322, 483, 532, 562
PspPI	GGNCC	3 cut(s)	481, 530, 623
PspPPI	RGGWCCY	1 cut(s)	481
RsaI	GTAC	2 cut(s)	8, 710
RsaNI	GTAC	2 cut(s)	7, 709
RseI	CAYNNNNRTG	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	411, 799
Sau96I	GGNCC	3 cut(s)	481, 530, 623
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	4 cut(s)	534, 535, 565, 627
SduI	GDGCHC	2 cut(s)	644, 669
SetI	ASST	8 cut(s)	82, 97, 131, 218, 238, 335, 585, 592
SinI	GGWCC	2 cut(s)	481, 530
SmaI	CCCGGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	576
SphI	GCATGC	1 cut(s)	766
SsiI	CCGC	8 cut(s)	36, 168, 225, 258, 262, 384, 510, 767
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	4 cut(s)	532, 533, 563, 625
StyI	CCWWGG	3 cut(s)	152, 192, 240
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	219, 725, 789
TaqII	GACCGA	1 cut(s)	267
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	4 cut(s)	39, 170, 260, 769
TfiI	GAWTC	3 cut(s)	353, 689, 779
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	6 cut(s)	100, 236, 460, 463, 583, 739
Tsp45I	GTSAC	1 cut(s)	328
TspGWI	ACGGA	2 cut(s)	316, 791
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	481, 530
XceI	RCATGY	3 cut(s)	313, 370, 766
XmaI	CCCGGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	803
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.