Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Reverse (-)

22624822 .. 22625652

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGACTTCTTCAACAACTCGTCAAAAGCAAACACCTCCCCTTCTTCTTCATCAAAGACCAAAAGAAAGCAACAAAACCAGCAAACCCAACAACCTCAGCAGCAGCAGCAGCAGCAGCAGGAGACGAGGTTTCTGGGAGTGAGAAGAAGGCCGTGGGGCAGATATGCGGCGGAGATAAGAGACCCTTCGACCAAAGAGAGGCATTGGCTCGGAACATTCGACACCGCCGAGGAGGCCGCCTTGGCCTACGACCGAGCTGCTCGCTCCATGCGCGGCTCCAAGGCTCGAACCAACTTTGTCTACTCGGACATGCCGCATGGCTCGTCTGTCACCTCCATTATCTCACCCGACGAATCACAGCATGACATGTCAGCCTTCTTCGCTACCCCACTCCAGCCCCAGCCCCAAACGACCAATCACCAGCAGTCGTTCTTTACTCAGGACCCATTTGACGCATACCCCTATTCTGGCGGGTCATCGGGCGGGTTCGGAAGCGGGTCTTACGGGCCAGTTTCGGGTGGTGATGAACCCGGGTCTGGGTCTGGGTCTGGGTCTCAGTCTCACACTGAGCTACCACCTTTGCCTCCATGTGTTTCTTCTACTTGTTACGGGCCTGACGGCGTTATGGGCTCTGATATGGATATGGGTTATTTCGGGTTTTCGGAGCCCACAACAAATAATGGGCTTGATCCAATGATGAGTGGATCCTACATGGGCTTTGACTCGAACGAGTTTGTGCAGCACAGTCCACTGTTTGGGAGCATGCCACCGGTTTCGGATGCGGGTATTGATGGGTTTGATTTGGGTTCATCATCTGCCTATTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

29.94

Weight (kDa)

4.94

Isoelectric Point (pI)

66.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	273
AclWI	GGATC	3 cut(s)	683, 699, 712
AfiI	CCNNNNNNNGG	6 cut(s)	198, 467, 515, 536, 537, 755
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	769
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	2 cut(s)	257, 571
AluI	AGCT	2 cut(s)	257, 571
Alw26I	GTCTC	4 cut(s)	116, 174, 558, 564
AlwI	GGATC	3 cut(s)	683, 699, 712
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	5 cut(s)	149, 234, 243, 506, 611
ApeKI	GCWGC	8 cut(s)	100, 103, 106, 109, 112, 115, 257, 739
AsiGI	ACCGGT	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	442, 506, 611
AsuC2I	CCSGG	2 cut(s)	531, 532
AsuHPI	GGTGA	4 cut(s)	322, 336, 410, 533
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	632, 669
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	8 cut(s)	112, 115, 118, 121, 124, 127, 244, 751
BccI	CCATC	1 cut(s)	785
BceAI	ACGGC	2 cut(s)	136, 634
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	2 cut(s)	531, 532
BcoDI	GTCTC	4 cut(s)	116, 174, 558, 564
BglI	GCCNNNNNGGC	2 cut(s)	233, 242
Bme1390I	CCNGG	2 cut(s)	531, 532
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	3 cut(s)	442, 506, 611
BmiI	GGNNCC	4 cut(s)	277, 444, 666, 706
BmrFI	CCNGG	2 cut(s)	531, 532
BmsI	GCATC	1 cut(s)	769
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	2 cut(s)	531, 532
BsaI	GGTCTC	2 cut(s)	174, 558
BsaJI	CCNNGG	5 cut(s)	152, 228, 240, 279, 530
BsaWI	WCCGGW	1 cut(s)	769
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	6 cut(s)	198, 467, 515, 536, 537, 755
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	509
BseDI	CCNNGG	5 cut(s)	152, 228, 240, 279, 530
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	6 cut(s)	198, 467, 515, 536, 537, 755
BseMII	CTCAG	4 cut(s)	110, 452, 558, 569
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	8 cut(s)	112, 115, 118, 121, 124, 127, 244, 751
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	151, 236, 245, 508, 613
BshTI	ACCGGT	1 cut(s)	769
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	531, 770
BslI	CCNNNNNNNGG	6 cut(s)	198, 467, 515, 536, 537, 755
BsmAI	GTCTC	4 cut(s)	116, 174, 558, 564
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	5 cut(s)	151, 236, 245, 508, 613
Bso31I	GGTCTC	2 cut(s)	174, 558
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	632, 669
Bsp143I	GATC	2 cut(s)	688, 704
BspANI	GGCC	5 cut(s)	151, 236, 245, 508, 613
BspCNI	CTCAG	4 cut(s)	109, 451, 559, 568
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	277, 444, 666, 706
BspPI	GGATC	3 cut(s)	683, 699, 712
BspTNI	GGTCTC	2 cut(s)	174, 558
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	5 cut(s)	152, 228, 240, 279, 530
BssMI	GATC	2 cut(s)	688, 704
BssT1I	CCWWGG	2 cut(s)	240, 279
Bst4CI	ACNGT	2 cut(s)	746, 753
BstC8I	GCNNGC	2 cut(s)	262, 764
BstDEI	CTNAG	4 cut(s)	96, 438, 555, 567
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	784
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	691, 707
BstMAI	GTCTC	4 cut(s)	116, 174, 558, 564
BstMBI	GATC	2 cut(s)	688, 704
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	9 cut(s)	106, 109, 112, 115, 233, 242, 270, 380, 627
BstNSI	RCATGY	3 cut(s)	313, 370, 766
BstSCI	CCNGG	2 cut(s)	529, 530
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	8 cut(s)	112, 115, 118, 121, 124, 127, 244, 751
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	5 cut(s)	151, 236, 245, 508, 613
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	784
BtsIMutI	CAGTG	2 cut(s)	564, 749
Cac8I	GCNNGC	2 cut(s)	262, 764
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	442, 506, 611
Cfr9I	CCCGGG	1 cut(s)	530
CseI	GACGC	1 cut(s)	461
CspAI	ACCGGT	1 cut(s)	769
CviAII	CATG	8 cut(s)	268, 310, 317, 362, 367, 588, 712, 763
DdeI	CTNAG	4 cut(s)	96, 438, 555, 567
DpnI	GATC	2 cut(s)	690, 706
DpnII	GATC	2 cut(s)	688, 704
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	240, 279
Eco24I	GRGCYC	2 cut(s)	632, 669
Eco31I	GGTCTC	2 cut(s)	174, 558
Eco47I	GGWCC	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	240, 279
EcoT38I	GRGCYC	2 cut(s)	632, 669
ErhI	CCWWGG	2 cut(s)	240, 279
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	8 cut(s)	271, 313, 320, 365, 370, 591, 715, 766
FalI	AAGNNNNNCTT	4 cut(s)	169, 201, 484, 516
FatI	CATG	8 cut(s)	267, 309, 316, 361, 366, 587, 711, 762
FauI	CCCGC	4 cut(s)	464, 476, 488, 775
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	2 cut(s)	632, 669
GlaI	GCGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	5 cut(s)	151, 236, 245, 508, 613
HapII	CCGG	2 cut(s)	531, 770
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	8 cut(s)	271, 313, 320, 365, 370, 591, 715, 766
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	353, 722
HpaII	CCGG	2 cut(s)	531, 770
HphI	GGTGA	4 cut(s)	322, 336, 410, 533
Hpy166II	GTNNAC	2 cut(s)	301, 749
Hpy188I	TCNGA	6 cut(s)	212, 307, 491, 634, 664, 778
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	301, 749
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	51, 141, 195, 385
HpyCH4III	ACNGT	2 cut(s)	746, 753
HpyCH4V	TGCA	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	9 cut(s)	106, 109, 112, 115, 233, 242, 270, 380, 627
HpyF3I	CTNAG	4 cut(s)	96, 438, 555, 567
Hsp92II	CATG	8 cut(s)	271, 313, 320, 365, 370, 591, 715, 766
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	688, 704
LmnI	GCTCC	4 cut(s)	269, 281, 664, 759
Lsp1109I	GCAGC	8 cut(s)	112, 115, 118, 121, 124, 127, 244, 751
LweI	GCATC	1 cut(s)	769
MaeIII	GTNAC	2 cut(s)	328, 605
MalI	GATC	2 cut(s)	690, 706
MboI	GATC	2 cut(s)	688, 704
MboII	GAAGA	5 cut(s)	36, 39, 156, 370, 588
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	632, 669
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	8 cut(s)	46, 105, 120, 192, 223, 226, 343, 594
MspI	CCGG	2 cut(s)	531, 770
MspR9I	CCNGG	2 cut(s)	531, 532
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	9 cut(s)	106, 109, 112, 115, 233, 242, 270, 380, 627
NciI	CCSGG	2 cut(s)	531, 532
NdeII	GATC	2 cut(s)	688, 704
NlaIII	CATG	8 cut(s)	271, 313, 320, 365, 370, 591, 715, 766
NlaIV	GGNNCC	4 cut(s)	277, 444, 666, 706
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	3 cut(s)	313, 370, 766
PaeI	GCATGC	1 cut(s)	766
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 225
PfeI	GAWTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	755
PinAI	ACCGGT	1 cut(s)	769
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	277, 444, 666, 706
PspPI	GGNCC	3 cut(s)	442, 506, 611
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	704
Sau3AI	GATC	2 cut(s)	688, 704
Sau96I	GGNCC	3 cut(s)	442, 506, 611
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	531, 532
SduI	GDGCHC	2 cut(s)	632, 669
SetI	ASST	7 cut(s)	38, 97, 131, 259, 335, 573, 580
SfaNI	GCATC	1 cut(s)	769
SfiI	GGCCNNNNNGGCC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	442
SmaI	CCCGGG	1 cut(s)	532
SphI	GCATGC	1 cut(s)	766
StyD4I	CCNGG	2 cut(s)	529, 530
StyI	CCWWGG	2 cut(s)	240, 279
TaaI	ACNGT	2 cut(s)	746, 753
TaqI	TCGA	4 cut(s)	188, 219, 286, 725
TaqII	GACCGA	1 cut(s)	267
TauI	GCSGC	4 cut(s)	170, 239, 276, 316
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	2 cut(s)	571, 756
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	8 cut(s)	100, 103, 106, 109, 112, 115, 257, 739
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	39, 540, 798
TspMI	CCCGGG	1 cut(s)	530
TspRI	CASTG	2 cut(s)	571, 756
Van91I	CCANNNNNTGG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	442
XceI	RCATGY	3 cut(s)	313, 370, 766
XmaI	CCCGGG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.