Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016682

Physical Location & Seq

Genomic Coordinates Reverse (-)

59845006 .. 59846086

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGTACTTCACCAACTCATCGTCAAAAGGCGGCAACTCTCCCTCCCCCACTTCCTCAAAGTCTAAGAAAAAACCGCAACAACAACAGAACCAGCAACCTCAGCAGCAACAACAGCAGGAGACGAGGTTCCTCGGAGTGAGGAGGAGGCCGTGGGGCCGATATGCTGCCGAAATAAGAGACCCTTCCACCAAGGAAAGGCATTGGCTCGGAACCTTCGACACAGCTGAGGAAGCTGCCTTGGCCTACGACCGAGCCGCCCGCTCCATGCGCGGCTCCAAAGCCAGAACCAACTTTGTCTACTCCGACATGCCTCACGGCTCGTCCGTCACCTCCATTATCTCACCGGACGAATCTCAGCGCGACATGTCAGCCTTCTTCACCGCCCCGCCCCAACCCCAAGCGCAGATGATCACCACCCACAACAACGGCCAGCAGCAGCAGCAGCCATTTTTCACTCAGGACCCGTTTGATGCCTACCCATTTTCCGGCGGGTCGTATGGCTCTTACGGACCCGGTTCGGGTTGTGGTGTTGGTGTTGGTGATGGAGCCGGGTCTCATGACAATGAGCTGCCACCTTTGCCTCCAAGTGTTTCCTCCACTGGTTATGGGCCTGGGGAAGTTATGGGCTCGGACTTTTATGGGTTCTCGGAGCCTACTACCACACATGGGTTTGATTCCTTGGCCAGTGGGTCATACATGGGTTTTGACTCGAATGAGTTTGTGCAGCACAGCCCACTCTTTGGGAGCATGCCACCGGTTTCGGATTCCGGTATCGATGGGTTTGATCTAGGCTCATCATCTGCCTATTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

29.48

Weight (kDa)

5.18

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 93	4.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13910
fragaria_vesca	FvH4_4g22310
malus_domestica	MD13G1132900.v1.1 MD16G1143300.v1.1
prunus_persica	Prupe.1G212700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428551
rosa_laevigata	RLG00000007143
rosa_roxburghii	Rroxscaffold_5G00370260
rosa_rugosa	Rorug04G0226200
rosa_samantha	Rh4AG283800 Rh4BG289500 Rh4CG305400 Rh4DG286500
rosa_wichuraiana	Rw4G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	2 cut(s)	273, 363
AciI	CCGC	8 cut(s)	33, 77, 258, 262, 273, 384, 389, 492
AcoI	YGGCCR	2 cut(s)	430, 684
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 669, 743
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	613
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	227, 236, 571
AluI	AGCT	3 cut(s)	227, 236, 571
Alw26I	GTCTC	3 cut(s)	116, 174, 561
AoxI	GGCC	6 cut(s)	149, 157, 243, 430, 611, 684
ApeKI	GCWGC	9 cut(s)	106, 167, 236, 436, 439, 442, 445, 571, 727
AsiGI	ACCGGT	1 cut(s)	757
AspLEI	GCGC	3 cut(s)	273, 363, 406
AspS9I	GGNCC	4 cut(s)	157, 463, 512, 611
AsuC2I	CCSGG	2 cut(s)	516, 553
AsuHPI	GGTGA	6 cut(s)	4, 322, 336, 373, 406, 554
AvaII	GGWCC	2 cut(s)	463, 512
BalI	TGGCCA	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	632
BbvCI	CCTCAGC	2 cut(s)	102, 228
BbvI	GCAGC	9 cut(s)	118, 154, 223, 448, 451, 454, 457, 558, 739
BccI	CCATC	2 cut(s)	539, 773
BceAI	ACGGC	3 cut(s)	136, 334, 445
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	516, 553
BcoDI	GTCTC	3 cut(s)	116, 174, 561
BfaI	CTAG	1 cut(s)	791
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	516, 553, 615
Bme18I	GGWCC	2 cut(s)	463, 512
BmgT120I	GGNCC	4 cut(s)	157, 463, 512, 611
BmiI	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 550, 654
BmrFI	CCNGG	3 cut(s)	516, 553, 615
BmsI	GCATC	1 cut(s)	463
Bpu10I	CCTNAGC	2 cut(s)	102, 228
BpuMI	CCSGG	2 cut(s)	516, 553
Bsa29I	ATCGAT	1 cut(s)	777
BsaI	GGTCTC	2 cut(s)	174, 561
BsaJI	CCNNGG	6 cut(s)	133, 152, 192, 240, 614, 681
BsaWI	WCCGGW	3 cut(s)	346, 757, 770
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 113, 143
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 669, 743
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	2 cut(s)	607, 687
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	6 cut(s)	133, 152, 192, 240, 614, 681
BseLI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 669, 743
BseMII	CTCAG	4 cut(s)	116, 219, 371, 473
BseNI	ACTGG	2 cut(s)	607, 687
BseRI	GAGGAG	2 cut(s)	157, 160
BseXI	GCAGC	9 cut(s)	118, 154, 223, 448, 451, 454, 457, 558, 739
BsgI	GTGCAG	1 cut(s)	746
Bsh1236I	CGCG	2 cut(s)	273, 363
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	6 cut(s)	151, 159, 245, 432, 613, 686
BshTI	ACCGGT	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	777
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	6 cut(s)	347, 489, 516, 552, 758, 771
BslI	CCNNNNNNNGG	5 cut(s)	198, 488, 521, 669, 743
BsmAI	GTCTC	3 cut(s)	116, 174, 561
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	151, 159, 245, 432, 613, 686
Bso31I	GGTCTC	2 cut(s)	174, 561
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	411, 787
BspACI	CCGC	8 cut(s)	33, 77, 258, 262, 273, 384, 389, 492
BspANI	GGCC	6 cut(s)	151, 159, 245, 432, 613, 686
BspCNI	CTCAG	4 cut(s)	115, 220, 370, 472
BspDI	ATCGAT	1 cut(s)	777
BspFNI	CGCG	2 cut(s)	273, 363
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 550, 654
BspTNI	GGTCTC	2 cut(s)	174, 561
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	607, 687
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	6 cut(s)	133, 152, 192, 240, 614, 681
BssMI	GATC	2 cut(s)	411, 787
BssT1I	CCWWGG	3 cut(s)	192, 240, 681
Bst2UI	CCWGG	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	262, 434, 752
BstDEI	CTNAG	5 cut(s)	66, 102, 228, 357, 459
BstDSI	CCRYGG	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	273, 363
BstHHI	GCGC	3 cut(s)	273, 363, 406
BstKTI	GATC	2 cut(s)	414, 790
BstMAI	GTCTC	3 cut(s)	116, 174, 561
BstMBI	GATC	2 cut(s)	411, 787
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 580
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	3 cut(s)	313, 370, 754
BstSCI	CCNGG	3 cut(s)	514, 551, 613
BstUI	CGCG	2 cut(s)	273, 363
BstV1I	GCAGC	9 cut(s)	118, 154, 223, 448, 451, 454, 457, 558, 739
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	6 cut(s)	151, 159, 245, 432, 613, 686
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	600, 694
Cac8I	GCNNGC	3 cut(s)	262, 434, 752
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	3 cut(s)	273, 363, 406
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	4 cut(s)	157, 463, 512, 611
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	757
CviAII	CATG	7 cut(s)	268, 310, 367, 560, 668, 700, 751
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	5 cut(s)	66, 102, 228, 357, 459
DpnI	GATC	2 cut(s)	413, 789
DpnII	GATC	2 cut(s)	411, 787
EaeI	YGGCCR	2 cut(s)	430, 684
Eco130I	CCWWGG	3 cut(s)	192, 240, 681
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	2 cut(s)	174, 561
Eco47I	GGWCC	2 cut(s)	463, 512
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	3 cut(s)	192, 240, 681
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	3 cut(s)	192, 240, 681
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	7 cut(s)	271, 313, 370, 563, 671, 703, 754
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	7 cut(s)	267, 309, 366, 559, 667, 699, 750
FauI	CCCGC	3 cut(s)	269, 396, 485
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	632
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	3 cut(s)	272, 362, 405
HaeIII	GGCC	6 cut(s)	151, 159, 245, 432, 613, 686
HapII	CCGG	6 cut(s)	347, 489, 516, 552, 758, 771
HhaI	GCGC	3 cut(s)	273, 363, 406
Hin1II	CATG	7 cut(s)	271, 313, 370, 563, 671, 703, 754
Hin6I	GCGC	3 cut(s)	271, 361, 404
HinP1I	GCGC	3 cut(s)	271, 361, 404
HinfI	GANTC	4 cut(s)	353, 677, 710, 767
HpaII	CCGG	6 cut(s)	347, 489, 516, 552, 758, 771
HphI	GGTGA	6 cut(s)	4, 322, 336, 373, 406, 554
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	6 cut(s)	137, 212, 307, 634, 652, 766
Hpy188III	TCNNGA	2 cut(s)	461, 560
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	195, 226, 385
HpyCH4V	TGCA	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 580
HpyF3I	CTNAG	5 cut(s)	66, 102, 228, 357, 459
Hsp92II	CATG	7 cut(s)	271, 313, 370, 563, 671, 703, 754
HspAI	GCGC	3 cut(s)	271, 361, 404
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	411, 787
LmnI	GCTCC	5 cut(s)	269, 281, 548, 652, 747
Lsp1109I	GCAGC	9 cut(s)	118, 154, 223, 448, 451, 454, 457, 558, 739
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	791
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	413, 789
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	411, 787
MboII	GAAGA	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	632
MlsI	TGGCCA	1 cut(s)	686
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	1 cut(s)	817
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	6 cut(s)	347, 489, 516, 552, 758, 771
MspR9I	CCNGG	3 cut(s)	516, 553, 615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	2 cut(s)	273, 363
MwoI	GCNNNNNNNGC	8 cut(s)	103, 115, 233, 242, 270, 442, 445, 580
NciI	CCSGG	2 cut(s)	516, 553
NdeII	GATC	2 cut(s)	411, 787
NlaIII	CATG	7 cut(s)	271, 313, 370, 563, 671, 703, 754
NlaIV	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 550, 654
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	3 cut(s)	313, 370, 754
PaeI	GCATGC	1 cut(s)	754
PagI	TCATGA	1 cut(s)	559
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 324
PfeI	GAWTC	3 cut(s)	353, 677, 767
PflMI	CCANNNNNTGG	1 cut(s)	743
PinAI	ACCGGT	1 cut(s)	757
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	463
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	8 cut(s)	131, 158, 214, 277, 465, 514, 550, 654
PspPI	GGNCC	4 cut(s)	157, 463, 512, 611
PspPPI	RGGWCCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	817
Sau3AI	GATC	2 cut(s)	411, 787
Sau96I	GGNCC	4 cut(s)	157, 463, 512, 611
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	3 cut(s)	516, 553, 615
SduI	GDGCHC	1 cut(s)	632
SetI	ASST	8 cut(s)	103, 131, 218, 229, 238, 335, 573, 580
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	2 cut(s)	463, 512
SmiMI	CAYNNNNRTG	1 cut(s)	564
SphI	GCATGC	1 cut(s)	754
SsiI	CCGC	8 cut(s)	33, 77, 258, 262, 273, 384, 389, 492
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	3 cut(s)	514, 551, 613
StyI	CCWWGG	3 cut(s)	192, 240, 681
TaqI	TCGA	3 cut(s)	219, 713, 777
TaqII	GACCGA	1 cut(s)	267
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	3 cut(s)	36, 260, 276
TfiI	GAWTC	3 cut(s)	353, 677, 767
Tru1I	TTAA	1 cut(s)	817
Tru9I	TTAA	1 cut(s)	817
TscAI	CASTG	2 cut(s)	607, 694
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	9 cut(s)	106, 167, 236, 436, 439, 442, 445, 571, 727
Tsp45I	GTSAC	1 cut(s)	328
TspGWI	ACGGA	2 cut(s)	316, 525
TspRI	CASTG	2 cut(s)	607, 694
Van91I	CCANNNNNTGG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	463, 512
XceI	RCATGY	3 cut(s)	313, 370, 754
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	791
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.