AT5G14100

ABC transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016211
Physical Location & Seq
Reverse (-)
4549438 .. 4551843
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14100.1

Sequence Viewer

Length: 837 bp
ATGGCAGTGTCGACGTTTTCGAGCCCCACGCCTGTCTTCGGCATCGCTGAACCACCAGCATCATTCTCCTCCACTGCAATTGGCTGGAAGCAACCGTTGAGATTTCGGAGGACGAAGAAGCCTCGAGTAATCTCTTGCGATTATTCTTGCATCGAGGTTAGAGATGTCTGCTACCGTCCTCCTGGAACACAGTTGAATATCTTGAATGGAGTTAATTTTTCCCTGCGCGAGAAAAGCTTTGGCTTGATCTTTGGGAAGAGTGGGAGTGGTAAAACTACCCTTTTGCAGCTTCTTGCTGGGCTAAACAAACCAACATCAGGTTCCATTTGTATCCAAGGATATGGGGATGATGGCCAGCCGAAGGCGGATCCTGACTTGCTTCCCACTGAAAAGGTGGGCATTGTTTTCCAGTTTCCAGAAAGATTCTTTGTTGCAGATAATGTGCTTGATGAGATTACTTTTGGTTGGCCAAGGCAAAAAGGTAGTTTGCAGCTTAAGGAGCAACTGACTTCGAATCTCCAGAGAGCATTTAATTGGGTTGGATTAGACAGCATCCCACTTGATAAAGATCCCCAGTTACTAAGTGGAGGCTACAAACGTCGGCTTGCACTAGCTATCCAATTGGTGCAAACTCCAGATTTACTGATACTGGATGAGCCCCTTGCTGGTCTTGACTGGAAAGCACGTGCAGATGTTGCAAAGCTCTTGAAGCACCTTAAGAAGGAACTGACTTTACTTGTTGTAAGTCATGATCTAAGAGAGTTAGCAGCCTTGGTTGACCAATCATGGAGGATGGAAACAGGTGGTGTTCTTGTTGCAGAACGTCCACCACTTTAG

Protein Analysis

278

Amino Acids

30.71

Weight (kDa)

9.0

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 68 - 222 1.8e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14100
fragaria_vesca FvH4_6g53800
malus_domestica MD17G1001700.v1.1
prunus_persica Prupe.3G308400_v2.0.a1
pyrus_communis pycom17g00710
rosa_chinensis RchiOBHm_Chr2g0175931
rosa_laevigata RLG00000022366
rosa_roxburghii Rroxscaffold_2G00076920
rosa_rugosa Rorug02G0588700 Rorug02G0588700
rosa_samantha Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana Rw2G054750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 228
AciI CCGC 1 cut(s) 365
AclWI GGATC 3 cut(s) 362, 375, 563
AcoI YGGCCR 2 cut(s) 352, 467
AcvI CACGTG 1 cut(s) 686
AfiI CCNNNNNNNGG 5 cut(s) 38, 317, 361, 665, 721
AflII CTTAAG 2 cut(s) 494, 716
AgsI TTSAA 3 cut(s) 196, 205, 709
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 5 cut(s) 237, 289, 493, 614, 703
AluI AGCT 5 cut(s) 237, 289, 493, 614, 703
AlwI GGATC 3 cut(s) 362, 375, 563
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 2 cut(s) 352, 467
ApeKI GCWGC 3 cut(s) 286, 490, 767
AspLEI GCGC 1 cut(s) 228
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 123
BalI TGGCCA 2 cut(s) 354, 469
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 26, 660
BbrPI CACGTG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 3 cut(s) 298, 502, 779
BccI CCATC 2 cut(s) 344, 787
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 341
BfaI CTAG 1 cut(s) 611
BfrI CTTAAG 2 cut(s) 494, 716
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 3 cut(s) 287, 491, 768
BlsI GCNGC 3 cut(s) 288, 492, 769
Bme1390I CCNGG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 322, 369
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 4 cut(s) 51, 68, 159, 561
BmuI ACTGGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 503, 618
Bpu14I TTCGAA 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 686
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 334, 470, 771
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 317, 361, 665, 721
Bse1I ACTGG 4 cut(s) 409, 574, 654, 680
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 334, 470, 771
BseGI GGATG 4 cut(s) 352, 552, 658, 798
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 5 cut(s) 38, 317, 361, 665, 721
BseNI ACTGG 4 cut(s) 409, 574, 654, 680
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 3 cut(s) 298, 502, 779
BseYI CCCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 354, 469
BsiHKCI CYCGRG 1 cut(s) 123
BslI CCNNNNNNNGG 5 cut(s) 38, 317, 361, 665, 721
BsnI GGCC 2 cut(s) 354, 469
BsoBI CYCGRG 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 26, 660
Bsp143I GATC 4 cut(s) 246, 367, 568, 751
BspACI CCGC 1 cut(s) 365
BspANI GGCC 2 cut(s) 354, 469
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 322, 369
BspPI GGATC 3 cut(s) 362, 375, 563
BspT104I TTCGAA 1 cut(s) 512
BspTI CTTAAG 2 cut(s) 494, 716
BsrI ACTGG 4 cut(s) 409, 574, 654, 680
BssECI CCNNGG 3 cut(s) 334, 470, 771
BssMI GATC 4 cut(s) 246, 367, 568, 751
BssT1I CCWWGG 3 cut(s) 334, 470, 771
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 96, 176, 192
Bst6I CTCTTC 1 cut(s) 251
BstAFI CTTAAG 2 cut(s) 494, 716
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBAI YACGTR 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 356, 606
BstDEI CTNAG 2 cut(s) 581, 755
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 352, 552, 658, 798
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 249, 370, 571, 754
BstMBI GATC 4 cut(s) 246, 367, 568, 751
BstMWI GCNNNNNNNGC 4 cut(s) 234, 499, 695, 709
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 298, 502, 779
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 367, 568
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 2 cut(s) 367, 568
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 354, 469
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 4 cut(s) 352, 552, 658, 798
BtsI GCAGTG 2 cut(s) 12, 72
BtsIMutI CAGTG 3 cut(s) 12, 72, 384
Cac8I GCNNGC 2 cut(s) 356, 606
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 2 cut(s) 749, 786
DdeI CTNAG 2 cut(s) 581, 755
DpnI GATC 4 cut(s) 248, 369, 570, 753
DpnII GATC 4 cut(s) 246, 367, 568, 751
EaeI YGGCCR 2 cut(s) 352, 467
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 334, 470, 771
Eco24I GRGCYC 2 cut(s) 26, 660
Eco72I CACGTG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 334, 470, 771
EcoT38I GRGCYC 2 cut(s) 26, 660
ErhI CCWWGG 3 cut(s) 334, 470, 771
FaeI CATG 2 cut(s) 752, 789
FaiI YATR 3 cut(s) 342, 750, 787
FatI CATG 2 cut(s) 748, 785
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 287, 491, 768
FokI GGATG 4 cut(s) 359, 539, 665, 805
FriOI GRGCYC 2 cut(s) 26, 660
Fsp4HI GCNGC 3 cut(s) 287, 491, 768
FspBI CTAG 1 cut(s) 611
GlaI GCGC 1 cut(s) 227
GluI GCNGC 3 cut(s) 287, 491, 768
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 503, 618
HaeIII GGCC 2 cut(s) 354, 469
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 752, 789
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 2 cut(s) 12, 778
HindII GTYRAC 2 cut(s) 12, 778
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 2 cut(s) 423, 514
Hpy166II GTNNAC 3 cut(s) 12, 778, 827
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 8 cut(s) 202, 371, 416, 520, 635, 671, 706, 749
Hpy8I GTNNAC 3 cut(s) 12, 778, 827
Hpy99I CGWCG 2 cut(s) 16, 603
HpyAV CCTTC 2 cut(s) 355, 715
HpyCH4III ACNGT 3 cut(s) 96, 176, 192
HpyCH4IV ACGT 4 cut(s) 14, 598, 685, 823
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 499, 695, 709
HpyF3I CTNAG 2 cut(s) 581, 755
HpySE526I ACGT 4 cut(s) 14, 598, 685, 823
Hsp92II CATG 2 cut(s) 752, 789
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 246, 367, 568, 751
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 3 cut(s) 298, 502, 779
LweI GCATC 4 cut(s) 51, 68, 159, 561
MaeI CTAG 1 cut(s) 611
MaeII ACGT 4 cut(s) 14, 598, 685, 823
MaeIII GTNAC 1 cut(s) 576
MalI GATC 4 cut(s) 248, 369, 570, 753
MboI GATC 4 cut(s) 246, 367, 568, 751
MboII GAAGA 3 cut(s) 28, 127, 268
MfeI CAATTG 2 cut(s) 78, 620
MflI RGATCY 2 cut(s) 367, 568
MhlI GDGCHC 2 cut(s) 26, 660
MlsI TGGCCA 2 cut(s) 354, 469
MluCI AATT 4 cut(s) 78, 214, 532, 620
MluNI TGGCCA 2 cut(s) 354, 469
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 7 cut(s) 79, 102, 132, 148, 189, 581, 783
Mox20I TGGCCA 2 cut(s) 354, 469
MscI TGGCCA 2 cut(s) 354, 469
MseI TTAA 4 cut(s) 213, 495, 531, 717
Msp20I TGGCCA 2 cut(s) 354, 469
MspCI CTTAAG 2 cut(s) 494, 716
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 2 cut(s) 78, 620
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 234, 499, 695, 709
NdeII GATC 4 cut(s) 246, 367, 568, 751
NlaIII CATG 2 cut(s) 752, 789
NlaIV GGNNCC 2 cut(s) 322, 369
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 748
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 2 cut(s) 423, 514
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 3 cut(s) 288, 492, 769
PmaCI CACGTG 1 cut(s) 686
PmlI CACGTG 1 cut(s) 686
Ppu21I YACGTR 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 181
PspCI CACGTG 1 cut(s) 686
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 322, 369
PspXI VCTCGAGB 1 cut(s) 123
PsrI GAACNNNNNNTAC 2 cut(s) 717, 749
PsuI RGATCY 2 cut(s) 367, 568
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 4 cut(s) 213, 495, 531, 717
SatI GCNGC 3 cut(s) 287, 491, 768
Sau3AI GATC 4 cut(s) 246, 367, 568, 751
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 26, 660
SfaNI GCATC 4 cut(s) 51, 68, 159, 561
Sfr274I CTCGAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 3 cut(s) 123, 494, 716
SmoI CTYRAG 3 cut(s) 123, 494, 716
Sse9I AATT 4 cut(s) 78, 214, 532, 620
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 3 cut(s) 334, 470, 771
TaaI ACNGT 3 cut(s) 96, 176, 192
TaiI ACGT 4 cut(s) 17, 601, 688, 826
TaqI TCGA 5 cut(s) 11, 20, 124, 153, 512
TasI AATT 4 cut(s) 78, 214, 532, 620
TfiI GAWTC 2 cut(s) 423, 514
Tru1I TTAA 4 cut(s) 213, 495, 531, 717
Tru9I TTAA 4 cut(s) 213, 495, 531, 717
TscAI CASTG 3 cut(s) 12, 79, 391
TseI GCWGC 3 cut(s) 286, 490, 767
TspRI CASTG 3 cut(s) 12, 79, 391
Vha464I CTTAAG 2 cut(s) 494, 716
XagI CCTNNNNNAGG 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 2 cut(s) 391, 581
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.