Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

71098182 .. 71101855

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0588700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTGCACACCAGAAGAAGAACCACAGTGTCGTGGGTGGTATTTTACGAGGCAGGAGATAGAACATTGTTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGAGTTATATTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGATTTGCCTCAGGTGACAATAGCATGTGCAATGATGTTGTGCCACCGATTTTTCATGCGTCAATCTCATGCTAAGAATGATTGGAAGACAATTGCAACTGTAAGCATCTTTGTTGCTTGCAAAATACAAGATACACGACGCCCTCTGAATGATGTTCTTCGTGAGGCATCTGATATGCTTCACAAATCGGATGCTTCTGCATTACCATATGTCAGACGAAAAGAAGTCTTCAAGGAATTGATTTTAGTTGCAGAGAAACTTCTGTTGTCCACAATTGGTTTTGATTTTGAGATGAAGCTTCCGTACATGTCACTTGTTGAAGCTTTAAGGAGATTAGATCTTTTCTCTGTCCTTGCTGAGAGGGCATGGAATTATGTTAATGATTGCCTTTGCACATCATTGTGCTTGCAGTATGAGCCCAACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATAGAAAAAGTCAAACTTCCTAAGGAGGAGGGAAAAGTTTGGTGGGTGGAATTTAATGTTTCGCCGAAACAGTTAGATGATGTCATTCAAGAGATGGTACGTAGTTTGCAGAAGGCAAGCAGAAAACAAGCTCTATCACCCAAAAATGGTGGGAAGGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAACCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTATAGAAGGTGAAAACTGTACCACCACGAAGGAAGCTTTGTCATGTCACACATGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGGGATCAAACCTGTCAGAGAGGAACCAGATGATCAGAACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGAAGAGGCGGAGATCAGGCGGTAAAGTTTTGAATAAGAAGATGGTGGATGCCACAGATGTAGAGATAGATGCTGAAGCCTGGATAGAAAGTGAGCTTGAAGGTGGTATAGTGGTAGAAGATGCCTCCCCAGAGAAGGAACAAAAGGAGGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

422

Amino Acids

47.73

Weight (kDa)

5.33

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	14 - 150	1.9e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	927, 1120, 1131
AclWI	GGATC	2 cut(s)	809, 1046
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	1206
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	3 cut(s)	467, 720, 958
AfiI	CCNNNNNNNGG	2 cut(s)	767, 1246
AflIII	ACRYGT	2 cut(s)	468, 989
AgsI	TTSAA	7 cut(s)	394, 482, 710, 843, 1114, 1144, 1211
AjnI	CCWGG	1 cut(s)	1190
AleI	CACNNNNGTG	2 cut(s)	884, 990
AluBI	AGCT	8 cut(s)	148, 460, 485, 596, 752, 825, 974, 1207
AluI	AGCT	8 cut(s)	148, 460, 485, 596, 752, 825, 974, 1207
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	809, 1046
AoxI	GGCC	2 cut(s)	806, 928
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	593, 614
ApoI	RAATTY	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	187, 750, 959
AxyI	CCTNAGG	2 cut(s)	171, 642
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	582
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbsI	GAAGAC	2 cut(s)	254, 382
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	601, 605
BccI	CCATC	5 cut(s)	80, 82, 709, 1019, 1147
BciT130I	CCWGG	1 cut(s)	1192
BclI	TGATCA	1 cut(s)	1066
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	819, 905
BfmI	CTRYAG	1 cut(s)	615
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	594, 615, 928
BlsI	GCNGC	3 cut(s)	595, 616, 929
Bme1390I	CCNGG	1 cut(s)	1192
BmiI	GGNNCC	1 cut(s)	1059
BmrFI	CCNGG	1 cut(s)	1192
BmsI	GCATC	6 cut(s)	276, 338, 343, 1150, 1171, 1222
BpiI	GAAGAC	2 cut(s)	254, 382
BsaAI	YACGTR	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	1095
BsaXI	ACNNNNNCTCC	1 cut(s)	1250
Bsc4I	CCNNNNNNNGG	2 cut(s)	767, 1246
Bse1I	ACTGG	1 cut(s)	851
Bse21I	CCTNAGG	2 cut(s)	171, 642
Bse3DI	GCAATG	3 cut(s)	198, 588, 1021
BseBI	CCWGG	1 cut(s)	1192
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	4 cut(s)	91, 358, 1030, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	767, 1246
BseMI	GCAATG	3 cut(s)	198, 588, 1021
BseMII	CTCAG	2 cut(s)	185, 510
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	601, 605
BseYI	CCCAGC	1 cut(s)	1034
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	808, 930
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	1096
BslI	CCNNNNNNNGG	2 cut(s)	767, 1246
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	808, 930
Bsp1286I	GDGCHC	2 cut(s)	8, 582
Bsp143I	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
BspACI	CCGC	3 cut(s)	927, 1120, 1131
BspANI	GGCC	2 cut(s)	808, 930
BspCNI	CTCAG	2 cut(s)	184, 511
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	1059
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	809, 1046
BsrDI	GCAATG	3 cut(s)	198, 588, 1021
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	1192
Bst4CI	ACNGT	5 cut(s)	27, 262, 606, 693, 956
Bst6I	CTCTTC	2 cut(s)	885, 1109
BstACI	GRCGYC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	280, 569, 739
BstDEI	CTNAG	4 cut(s)	171, 234, 519, 642
BstF5I	GGATG	4 cut(s)	91, 358, 1030, 1165
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	5 cut(s)	502, 817, 1041, 1069, 1127
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
BstNI	CCWGG	1 cut(s)	1192
BstNSI	RCATGY	3 cut(s)	189, 472, 993
BstSCI	CCNGG	1 cut(s)	1190
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	722
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	601, 605
BstV2I	GAAGAC	2 cut(s)	254, 382
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu36I	CCTNAGG	2 cut(s)	171, 642
BsuRI	GGCC	2 cut(s)	808, 930
BtsCI	GGATG	4 cut(s)	91, 358, 1030, 1165
BtsIMutI	CAGTG	3 cut(s)	32, 602, 858
Cac8I	GCNNGC	3 cut(s)	280, 569, 739
CfoI	GCGC	1 cut(s)	120
CseI	GACGC	2 cut(s)	209, 309
Csp6I	GTAC	3 cut(s)	466, 719, 957
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	9 cut(s)	154, 186, 217, 230, 469, 528, 834, 981, 990
CviQI	GTAC	3 cut(s)	466, 719, 957
DdeI	CTNAG	4 cut(s)	171, 234, 519, 642
DpnI	GATC	5 cut(s)	501, 816, 1040, 1068, 1126
DpnII	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	885, 1109
EarI	CTCTTC	2 cut(s)	885, 1109
EciI	GGCGGA	1 cut(s)	1135
Eco105I	TACGTA	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	1206
Eco81I	CCTNAGG	2 cut(s)	171, 642
EcoRII	CCWGG	1 cut(s)	1190
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 984, 993
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	9 cut(s)	153, 185, 216, 229, 468, 527, 833, 980, 989
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	3 cut(s)	594, 615, 928
FokI	GGATG	4 cut(s)	98, 365, 1037, 1172
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	3 cut(s)	594, 615, 928
FspBI	CTAG	2 cut(s)	819, 905
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	3 cut(s)	594, 615, 928
GsaI	CCCAGC	1 cut(s)	1038
HaeIII	GGCC	2 cut(s)	808, 930
HapII	CCGG	1 cut(s)	1096
HgaI	GACGC	2 cut(s)	209, 309
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 984, 993
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	3 cut(s)	458, 483, 972
HinfI	GANTC	1 cut(s)	911
HpaII	CCGG	1 cut(s)	1096
HphI	GGTGA	3 cut(s)	187, 750, 959
Hpy166II	GTNNAC	4 cut(s)	6, 432, 602, 848
Hpy188I	TCNGA	8 cut(s)	81, 309, 334, 352, 377, 790, 1052, 1071
Hpy188III	TCNNGA	2 cut(s)	323, 710
Hpy8I	GTNNAC	4 cut(s)	6, 432, 602, 848
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	7 cut(s)	727, 769, 798, 938, 961, 1205, 1240
HpyCH4III	ACNGT	5 cut(s)	27, 262, 606, 693, 956
HpyCH4IV	ACGT	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
HpyF3I	CTNAG	4 cut(s)	171, 234, 519, 642
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 984, 993
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
Lsp1109I	GCAGC	2 cut(s)	601, 605
LweI	GCATC	6 cut(s)	276, 338, 343, 1150, 1171, 1222
MaeI	CTAG	2 cut(s)	819, 905
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	3 cut(s)	175, 471, 983
MalI	GATC	5 cut(s)	501, 816, 1040, 1068, 1126
MboI	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
MfeI	CAATTG	2 cut(s)	252, 435
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	8, 582
MluCI	AATT	7 cut(s)	113, 252, 398, 435, 532, 671, 1109
MlyI	GAGTC	1 cut(s)	920
MseI	TTAA	5 cut(s)	141, 488, 540, 675, 797
MslI	CAYNNNNRTG	3 cut(s)	562, 884, 990
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	1096
MspR9I	CCNGG	1 cut(s)	1192
MunI	CAATTG	2 cut(s)	252, 435
MvaI	CCWGG	1 cut(s)	1192
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
NlaIII	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 984, 993
NlaIV	GGNNCC	1 cut(s)	1059
NmuCI	GTSAC	3 cut(s)	175, 471, 983
NspI	RCATGY	3 cut(s)	189, 472, 993
OliI	CACNNNNGTG	2 cut(s)	884, 990
PciI	ACATGT	2 cut(s)	468, 989
PkrI	GCNGC	3 cut(s)	595, 616, 929
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
Ppu21I	YACGTR	1 cut(s)	722
PscI	ACATGT	2 cut(s)	468, 989
Psp6I	CCWGG	1 cut(s)	1190
PspFI	CCCAGC	1 cut(s)	1034
PspGI	CCWGG	1 cut(s)	1190
PspN4I	GGNNCC	1 cut(s)	1059
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	467, 720, 958
RsaNI	GTAC	3 cut(s)	466, 719, 957
RseI	CAYNNNNRTG	3 cut(s)	562, 884, 990
SaqAI	TTAA	5 cut(s)	141, 488, 540, 675, 797
SatI	GCNGC	3 cut(s)	594, 615, 928
Sau3AI	GATC	5 cut(s)	499, 814, 1038, 1066, 1124
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	1192
SduI	GDGCHC	2 cut(s)	8, 582
SfaNI	GCATC	6 cut(s)	276, 338, 343, 1150, 1171, 1222
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	3 cut(s)	562, 884, 990
SnaBI	TACGTA	1 cut(s)	722
Sse9I	AATT	7 cut(s)	113, 252, 398, 435, 532, 671, 1109
SsiI	CCGC	3 cut(s)	927, 1120, 1131
SspMI	CTAG	2 cut(s)	819, 905
StyD4I	CCNGG	1 cut(s)	1190
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	5 cut(s)	27, 262, 606, 693, 956
TaiI	ACGT	1 cut(s)	724
TasI	AATT	7 cut(s)	113, 252, 398, 435, 532, 671, 1109
TauI	GCSGC	1 cut(s)	930
Tru1I	TTAA	5 cut(s)	141, 488, 540, 675, 797
Tru9I	TTAA	5 cut(s)	141, 488, 540, 675, 797
TscAI	CASTG	3 cut(s)	32, 609, 858
TseFI	GTSAC	3 cut(s)	175, 471, 983
TseI	GCWGC	2 cut(s)	593, 614
Tsp45I	GTSAC	3 cut(s)	175, 471, 983
TspDTI	ATGAA	2 cut(s)	205, 470
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	32, 609, 858
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	3 cut(s)	189, 472, 993
XspI	CTAG	2 cut(s)	819, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.