RLG00000007040

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
12960057 .. 12962802
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007040

Sequence Viewer

Length: 1374 bp
ATGAAGTTACTGGGATGGATGCATCGAAAGTTTCGTCAGAATAGTAATGAACCTGTTTTCCTCATTGAGCGTTCTTGTGCATGTCTTGCAGGCCAGCCATCACTCGATGATCAACAATACTATCCAAAGGCAAACTATGGCACTAAACCCTTTAAGCAAGGCCAGAGAGACCATCAGCTTCGAAATTCTTTTGCTGGTCTAGAATCAGCTAAGGTAGATCAAGAAGACTACTATGAAGAGGAATCCTCTGCTGCGGCATCTGAGCTCTTCCATGGCTTTCTTGCAATTGGCACCTTTGGCTCAGACCAAGTCATCACCGAGCCATCAACACCAACACTGCCAATGTCTGTCGAGAATATAACTGAAAAAGAGACGGAGGCCACAGAGAATGAATTGAAGCTCATAAATGATGAGTTGGAGAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAACGGAAGAAGTAGTCATGGTAGCACCATTACACTGAGTGGGAAGATGCTAGAAGTCCCAGAGAGCAATGGGATTAATGGAACTACAGTCTGCCCTCTCCAGGGATATCTTTTCGGCTCAGCATATGAGTTGTCAGAAACAACAACAGTAGCGAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAATTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGCGAGCAGATCAGAAGGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGGAGCTCTGCAGCAGCTGCTGATGCTGGCTCAGCAGAAACAAAACTGAATAAGATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGAATGCTGGGGAAAAATCTGGCAAGTACCAAAAGGGCGAAAAGAAAAAGAGAATGAGCACTGATGGGATTTGCAACCATGGAGATCAGGTCCTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTTTTCATCAAAACAGAGCATGCGACGCTACAAGAGCCAATCTAACCCGCCCCAGTTTGCACTTGGCGGGCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTTAAAGACTTACGAAGGTGATGATGCTCCATTGTCTTCCTTGCTGCAACAGGTAAACGCCGCCGTTTTGCGGTCTTCCGCCGAAATATTTGCGAACGGTGTCGTCATTGTTTCTTGTTTATGCTTTGGCAGAGTTGATCAGATTTCAATCGGAATTTCAATTGCGACCTATCTTCAGGTTTTTCAATTGAAAATAGACTGA
Functional Annotation

Protein Analysis

458

Amino Acids

50.58

Weight (kDa)

6.07

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 6 cut(s) 254, 1103, 1122, 1233, 1243, 1251
AclWI GGATC 2 cut(s) 877, 1163
AcsI RAATTY 3 cut(s) 184, 450, 1326
AcuI CTGAAG 3 cut(s) 456, 872, 1331
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 3 cut(s) 589, 590, 1242
AgsI TTSAA 6 cut(s) 397, 1134, 1320, 1332, 1358, 1363
AjnI CCWGG 1 cut(s) 588
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw21I GWGCWC 4 cut(s) 267, 836, 983, 1152
Alw26I GTCTC 2 cut(s) 162, 365
AlwI GGATC 2 cut(s) 877, 1163
AlwNI CAGNNNCTG 2 cut(s) 845, 848
AoxI GGCC 3 cut(s) 91, 160, 378
ApeKI GCWGC 5 cut(s) 251, 839, 842, 845, 1216
ApoI RAATTY 3 cut(s) 184, 450, 1326
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AseI ATTAAT 1 cut(s) 564
AspS9I GGNCC 1 cut(s) 1012
AsuHPI GGTGA 4 cut(s) 307, 680, 902, 1202
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 1012
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 267, 836
BbsI GAAGAC 4 cut(s) 231, 759, 1200, 1239
Bbv12I GWGCWC 4 cut(s) 267, 836, 983, 1152
BbvI GCAGC 5 cut(s) 238, 832, 851, 854, 1203
BccI CCATC 5 cut(s) 9, 106, 180, 331, 980
BceAI ACGGC 1 cut(s) 1220
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 1 cut(s) 590
BclI TGATCA 3 cut(s) 109, 1024, 1309
BcoDI GTCTC 2 cut(s) 162, 365
BfaI CTAG 2 cut(s) 200, 539
BfmI CTRYAG 2 cut(s) 573, 837
BisI GCNGC 7 cut(s) 252, 255, 840, 843, 846, 1217, 1233
BlpI GCTNAGC 2 cut(s) 607, 859
BlsI GCNGC 7 cut(s) 253, 256, 841, 844, 847, 1218, 1234
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 1012
BmgT120I GGNCC 1 cut(s) 1012
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 590
BmrI ACTGGG 2 cut(s) 20, 1102
BmsI GCATC 7 cut(s) 9, 31, 266, 525, 841, 1156, 1186
BmuI ACTGGG 2 cut(s) 20, 1102
BpiI GAAGAC 4 cut(s) 231, 759, 1200, 1239
BplI GAGNNNNNCTC 6 cut(s) 230, 262, 646, 678, 705, 737
BpmI CTGGAG 2 cut(s) 572, 732
Bpu10I CCTNAGC 2 cut(s) 210, 441
Bpu1102I GCTNAGC 2 cut(s) 607, 859
Bpu14I TTCGAA 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 1319
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 271, 589, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 996, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 589, 590, 1242
Bse1I ACTGG 3 cut(s) 15, 1108, 1157
Bse3DI GCAATG 2 cut(s) 463, 562
Bse8I GATNNNNATC 1 cut(s) 1319
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 3 cut(s) 271, 589, 1000
BseGI GGATG 3 cut(s) 20, 24, 451
BseJI GATNNNNATC 1 cut(s) 1319
BseLI CCNNNNNNNGG 3 cut(s) 589, 590, 1242
BseMI GCAATG 2 cut(s) 463, 562
BseMII CTCAG 6 cut(s) 252, 315, 515, 621, 736, 873
BseNI ACTGG 3 cut(s) 15, 1108, 1157
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 5 cut(s) 238, 832, 851, 854, 1203
BseYI CCCAGC 1 cut(s) 929
BshFI GGCC 3 cut(s) 93, 162, 380
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 4 cut(s) 267, 836, 983, 1152
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 3 cut(s) 589, 590, 1242
BsmAI GTCTC 2 cut(s) 162, 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 530
BsmI GAATGC 2 cut(s) 823, 931
BsnI GGCC 3 cut(s) 93, 162, 380
Bso31I GGTCTC 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 267, 836, 983, 1152
Bsp143I GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
Bsp1720I GCTNAGC 2 cut(s) 607, 859
Bsp19I CCATGG 2 cut(s) 271, 1000
BspACI CCGC 6 cut(s) 254, 1103, 1122, 1233, 1243, 1251
BspANI GGCC 3 cut(s) 93, 162, 380
BspCNI CTCAG 6 cut(s) 253, 314, 516, 620, 735, 872
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 2 cut(s) 877, 1163
BspQI GCTCTTC 1 cut(s) 272
BspT104I TTCGAA 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 463, 562
BsrI ACTGG 3 cut(s) 15, 1108, 1157
BssECI CCNNGG 3 cut(s) 271, 589, 1000
BssMI GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
BssT1I CCWWGG 2 cut(s) 271, 1000
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 3 cut(s) 577, 637, 1271
Bst6I CTCTTC 4 cut(s) 231, 272, 677, 693
BstAPI GCANNNNNTGC 2 cut(s) 86, 845
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 6 cut(s) 91, 95, 741, 856, 1076, 1124
BstDEI CTNAG 8 cut(s) 210, 261, 301, 441, 524, 607, 722, 859
BstDSI CCRYGG 2 cut(s) 271, 1000
BstF5I GGATG 3 cut(s) 20, 24, 451
BstKTI GATC 8 cut(s) 112, 220, 748, 885, 1009, 1027, 1158, 1312
BstMAI GTCTC 2 cut(s) 162, 365
BstMBI GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
BstMWI GCNNNNNNNGC 8 cut(s) 86, 297, 486, 845, 851, 860, 1080, 1089
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 2 cut(s) 84, 1078
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 2 cut(s) 573, 837
BstV1I GCAGC 5 cut(s) 238, 832, 851, 854, 1203
BstV2I GAAGAC 4 cut(s) 231, 759, 1200, 1239
BstX2I RGATCY 1 cut(s) 882
BstYI RGATCY 1 cut(s) 882
BsuRI GGCC 3 cut(s) 93, 162, 380
BtgI CCRYGG 2 cut(s) 271, 1000
BtsCI GGATG 3 cut(s) 20, 24, 451
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 4 cut(s) 335, 521, 981, 1150
Cac8I GCNNGC 6 cut(s) 91, 95, 741, 856, 1076, 1124
CaiI CAGNNNCTG 2 cut(s) 845, 848
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 1012
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 1 cut(s) 949
CviAII CATG 9 cut(s) 81, 272, 482, 506, 796, 814, 1001, 1036, 1075
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 8 cut(s) 210, 261, 301, 441, 524, 607, 722, 859
DpnI GATC 8 cut(s) 111, 219, 747, 884, 1008, 1026, 1157, 1311
DpnII GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
DraIII CACNNNGTG 1 cut(s) 527
Eam1104I CTCTTC 4 cut(s) 231, 272, 677, 693
EarI CTCTTC 4 cut(s) 231, 272, 677, 693
EciI GGCGGA 1 cut(s) 1240
Ecl136II GAGCTC 2 cut(s) 265, 834
Eco130I CCWWGG 2 cut(s) 271, 1000
Eco24I GRGCYC 2 cut(s) 267, 836
Eco31I GGTCTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 1012
Eco53kI GAGCTC 2 cut(s) 265, 834
Eco57I CTGAAG 3 cut(s) 456, 872, 1331
EcoICRI GAGCTC 2 cut(s) 265, 834
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRII CCWGG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 596
EcoT14I CCWWGG 2 cut(s) 271, 1000
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 267, 836
ErhI CCWWGG 2 cut(s) 271, 1000
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 9 cut(s) 84, 275, 485, 509, 799, 817, 1004, 1039, 1078
FaqI GGGAC 1 cut(s) 530
FatI CATG 9 cut(s) 80, 271, 481, 505, 795, 813, 1000, 1035, 1074
FauI CCCGC 2 cut(s) 1110, 1115
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 3 cut(s) 109, 1024, 1309
Fnu4HI GCNGC 7 cut(s) 252, 255, 840, 843, 846, 1217, 1233
FokI GGATG 3 cut(s) 27, 31, 458
FriOI GRGCYC 2 cut(s) 267, 836
Fsp4HI GCNGC 7 cut(s) 252, 255, 840, 843, 846, 1217, 1233
FspBI CTAG 2 cut(s) 200, 539
GluI GCNGC 7 cut(s) 252, 255, 840, 843, 846, 1217, 1233
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 2 cut(s) 572, 732
HaeIII GGCC 3 cut(s) 93, 162, 380
HgaI GACGC 1 cut(s) 1089
Hin1II CATG 9 cut(s) 84, 275, 485, 509, 799, 817, 1004, 1039, 1078
HinfI GANTC 4 cut(s) 203, 242, 461, 1130
HphI GGTGA 4 cut(s) 307, 680, 902, 1202
Hpy166II GTNNAC 2 cut(s) 910, 1228
Hpy188III TCNNGA 8 cut(s) 200, 221, 352, 468, 711, 796, 1028, 1046
Hpy8I GTNNAC 2 cut(s) 910, 1228
Hpy99I CGWCG 1 cut(s) 1083
HpyAV CCTTC 6 cut(s) 415, 465, 640, 745, 896, 1181
HpyCH4III ACNGT 3 cut(s) 577, 637, 1271
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 297, 486, 845, 851, 860, 1080, 1089
HpyF3I CTNAG 8 cut(s) 210, 261, 301, 441, 524, 607, 722, 859
Hsp92II CATG 9 cut(s) 84, 275, 485, 509, 799, 817, 1004, 1039, 1078
Ksp22I TGATCA 3 cut(s) 109, 1024, 1309
Kzo9I GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 5 cut(s) 649, 713, 831, 1147, 1204
Lsp1109I GCAGC 5 cut(s) 238, 832, 851, 854, 1203
LweI GCATC 7 cut(s) 9, 31, 266, 525, 841, 1156, 1186
MaeI CTAG 2 cut(s) 200, 539
MaeIII GTNAC 1 cut(s) 6
MalI GATC 8 cut(s) 111, 219, 747, 884, 1008, 1026, 1157, 1311
MboI GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
MfeI CAATTG 3 cut(s) 285, 1332, 1358
MflI RGATCY 1 cut(s) 882
MhlI GDGCHC 4 cut(s) 267, 836, 983, 1152
MluCI AATT 9 cut(s) 184, 285, 392, 450, 689, 703, 1326, 1332, 1358
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 8 cut(s) 71, 232, 256, 370, 594, 648, 724, 1025
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 3 cut(s) 153, 564, 1175
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 845
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 3 cut(s) 285, 1332, 1358
Mva1269I GAATGC 2 cut(s) 823, 931
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 8 cut(s) 86, 297, 486, 845, 851, 860, 1080, 1089
NcoI CCATGG 2 cut(s) 271, 1000
NdeI CATATG 1 cut(s) 613
NdeII GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
NlaIII CATG 9 cut(s) 84, 275, 485, 509, 799, 817, 1004, 1039, 1078
NlaIV GGNNCC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 2 cut(s) 84, 1078
NspV TTCGAA 1 cut(s) 181
PaeI GCATGC 1 cut(s) 1078
PagI TCATGA 1 cut(s) 795
PciSI GCTCTTC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 2 cut(s) 823, 931
PfeI GAWTC 4 cut(s) 203, 242, 461, 1130
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 7 cut(s) 253, 256, 841, 844, 847, 1218, 1234
PpuMI RGGWCCY 1 cut(s) 1012
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 2 cut(s) 267, 836
Psp5II RGGWCCY 1 cut(s) 1012
Psp6I CCWGG 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 1012
PspPPI RGGWCCY 1 cut(s) 1012
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 2 cut(s) 845, 848
PsuI RGATCY 1 cut(s) 882
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 1 cut(s) 816
SacI GAGCTC 2 cut(s) 267, 836
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 153, 564, 1175
SatI GCNGC 7 cut(s) 252, 255, 840, 843, 846, 1217, 1233
Sau3AI GATC 8 cut(s) 109, 217, 745, 882, 1006, 1024, 1155, 1309
Sau96I GGNCC 1 cut(s) 1012
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 4 cut(s) 267, 836, 983, 1152
SfaNI GCATC 7 cut(s) 9, 31, 266, 525, 841, 1156, 1186
SfcI CTRYAG 2 cut(s) 573, 837
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 1 cut(s) 1012
SmiMI CAYNNNNRTG 1 cut(s) 816
SphI GCATGC 1 cut(s) 1078
Sse9I AATT 9 cut(s) 184, 285, 392, 450, 689, 703, 1326, 1332, 1358
SsiI CCGC 6 cut(s) 254, 1103, 1122, 1233, 1243, 1251
SspI AATATT 1 cut(s) 1260
SspMI CTAG 2 cut(s) 200, 539
SstI GAGCTC 2 cut(s) 267, 836
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 2 cut(s) 271, 1000
TaaI ACNGT 3 cut(s) 577, 637, 1271
TaqI TCGA 5 cut(s) 25, 105, 181, 351, 923
TaqII GACCGA 1 cut(s) 710
TasI AATT 9 cut(s) 184, 285, 392, 450, 689, 703, 1326, 1332, 1358
TauI GCSGC 2 cut(s) 257, 1235
TfiI GAWTC 4 cut(s) 203, 242, 461, 1130
Tru1I TTAA 3 cut(s) 153, 564, 1175
Tru9I TTAA 3 cut(s) 153, 564, 1175
TscAI CASTG 4 cut(s) 342, 528, 988, 1157
TseI GCWGC 5 cut(s) 251, 839, 842, 845, 1216
TspGWI ACGGA 2 cut(s) 389, 507
TspRI CASTG 4 cut(s) 342, 528, 988, 1157
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 1012
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 3 cut(s) 184, 450, 1326
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 84, 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 1115
XspI CTAG 2 cut(s) 200, 539
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.