MD16G1122900.v1.1

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
8858506 .. 8861923
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1122900.v1.1.491

Sequence Viewer

Length: 1317 bp
ATGCTTGCATTGGGTCGGGTGTTCCTTACACCCCCACCTTCTCTTTGTTGTTTGCCCTTGTTGGCAATGTTGCTCGTGGACTGCCATGAGCTTCTTTCACTTGGCTGCAGGTTCTCTGGTGTCTGTAGCTGGGCTAGGAGTGAAGCTTGGAATTGGCTGCTGGTATCGCGGCGGTTATGGCGGAAGACGCAGCAGCTCCGGTTGTTTTTGTGTTTTGGTCTCAACTTTGGTTGGGCCTCTGTTGTTTGGCAGCCGTCGCTCGACGATCAACAATACTATCCGAAGTCAAACTGGGGCACGAAACCCTTCAAGCAAGCCCCGAAAGATCAGCACCTTCGAAAATCTTTCAACGGTCTAGATGCAGCTAGGGCAGAAGAAGAATACTATGAAGAGGAATCATCTGCTGAGGCATCGGTGCTCTTCCATGGCTTTCTTGCAATCGGCACCCTTGGAAGCTCGGACCAAGTGAACACTGAACCATCAACCCCAATGCTTGGAATCTCCGTGGAGAACATAACCGAAAAAGAAACTGAGGCCACGGAGAACGAGTTGAATCTCATCAATGATGAATTGGAGAAAGAGCTAGTGGCTGTTCCGGCGAAGGATGATATTTGTAATGATTCATCTGGAAGAAACAGCTATGTCAGCAATGGAAGAAGTAGCCAAGGAAGCACCATTACGCTAAGCGGGAAGGCACTGGAAGGCGCAGCGAACAAGGGGAATAATGGAACGGCAGTGTGCCCGCTCCAGGGATATCTTTTCGGGTCGGCATATGAGTTGTCTGAAACAACAATAGTGGCAAAGAAGGAACACAGGACATCTCTTGGTGAGCTGTTCCAGAGGACTAAATTGGCTGAGGAGATCTCCGGAGCAGAATTGATCAAAGAGGAGAAGCGAGCGGATAAGTCCGCCATGCACTTAATCAAAAAGATGCTCAAGAAAAAAATGCTTCACGCTTCTTCTCGTGGCTCCGGCAGGGCTGCTGATCATGCTTCAGCAGAAACAAAACTCAATAAGATCCTTCACATGTTCCGTAGAAAAGTTCACCCTGAAACCTCGGCGGCTGAGCGAAAACCCGGTAAGTATAAAGGGAACCAAAGCAAGAAGAAACCAAGCAGTGAGGGGACTTACAACAATGGAGGTCAGGATGAAGACATCTTGTTATATCCTCAACAAGGATTTTCTTCAATGCAGAGCATGTGGCACTACAAGAGCCAATCAAACCCGCTCCAATTTGTGCTTAGCGGCATGGATTCAAAGGAGAACAGGGAGCACTGGATCAAAACAGGTGCAGACTACCTAGTCCTGGAGCTGTGA
Functional Annotation

Protein Analysis

439

Amino Acids

48.85

Weight (kDa)

7.6

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1301
Acc36I ACCTGC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 494
AccBSI CCGCTC 3 cut(s) 745, 899, 1228
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 866
AclWI GGATC 2 cut(s) 1012, 1286
AcuI CTGAAG 1 cut(s) 978
AfiI CCNNNNNNNGG 5 cut(s) 494, 748, 749, 1175, 1306
AflIII ACRYGT 1 cut(s) 1026
AgsI TTSAA 5 cut(s) 310, 349, 553, 1188, 1257
AjnI CCWGG 2 cut(s) 747, 1305
Alw21I GWGCWC 2 cut(s) 420, 1275
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 1012, 1286
Aor13HI TCCGGA 1 cut(s) 866
AoxI GGCC 2 cut(s) 234, 534
ApeKI GCWGC 8 cut(s) 105, 157, 190, 193, 250, 362, 707, 980
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 2 cut(s) 234, 460
AsuC2I CCSGG 1 cut(s) 1077
AsuHPI GGTGA 2 cut(s) 839, 1037
AsuII TTCGAA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 2 cut(s) 299, 743
BanI GGYRCC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 661, 693
BauI CACGAG 2 cut(s) 74, 963
BbsI GAAGAC 2 cut(s) 191, 1158
Bbv12I GWGCWC 2 cut(s) 420, 1275
BbvCI CCTCAGC 2 cut(s) 405, 855
BbvI GCAGC 8 cut(s) 92, 144, 202, 205, 262, 374, 719, 967
BccI CCATC 1 cut(s) 487
BceAI ACGGC 2 cut(s) 238, 747
BciT130I CCWGG 2 cut(s) 749, 1307
BclI TGATCA 2 cut(s) 879, 985
BcnI CCSGG 1 cut(s) 1077
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 5 cut(s) 135, 356, 366, 584, 1301
BfmI CTRYAG 2 cut(s) 106, 124
BfuAI ACCTGC 1 cut(s) 99
BglII AGATCT 1 cut(s) 861
BlpI GCTNAGC 3 cut(s) 683, 1065, 1241
Bme1390I CCNGG 3 cut(s) 749, 1077, 1307
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 234, 460
BmiI GGNNCC 3 cut(s) 445, 970, 1094
BmrFI CCNGG 3 cut(s) 749, 1077, 1307
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 349, 419, 921
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 191, 1158
BplI GAGNNNNNCTC 2 cut(s) 848, 880
BpmI CTGGAG 1 cut(s) 731
Bpu10I CCTNAGC 2 cut(s) 405, 855
Bpu1102I GCTNAGC 3 cut(s) 683, 1065, 1241
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 920
BpuMI CCSGG 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 7 cut(s) 424, 448, 504, 537, 664, 748, 1056
BsaWI WCCGGW 2 cut(s) 198, 866
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 5 cut(s) 494, 748, 749, 1175, 1306
Bse1I ACTGG 3 cut(s) 296, 702, 1280
Bse3DI GCAATG 2 cut(s) 72, 655
BseAI TCCGGA 1 cut(s) 866
BseBI CCWGG 2 cut(s) 749, 1307
BseDI CCNNGG 7 cut(s) 424, 448, 504, 537, 664, 748, 1056
BseGI GGATG 2 cut(s) 610, 1153
BseLI CCNNNNNNNGG 5 cut(s) 494, 748, 749, 1175, 1306
BseMI GCAATG 2 cut(s) 72, 655
BseMII CTCAG 4 cut(s) 396, 522, 846, 1056
BseNI ACTGG 3 cut(s) 296, 702, 1280
BseRI GAGGAG 2 cut(s) 872, 902
BseSI GKGCMC 2 cut(s) 299, 743
BseXI GCAGC 8 cut(s) 92, 144, 202, 205, 262, 374, 719, 967
BseYI CCCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 1311
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 236, 536
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 2 cut(s) 420, 1275
BsiSI CCGG 5 cut(s) 199, 596, 867, 972, 1077
BslFI GGGAC 1 cut(s) 1138
BslI CCNNNNNNNGG 5 cut(s) 494, 748, 749, 1175, 1306
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 236, 536
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 4 cut(s) 299, 420, 743, 1275
Bsp13I TCCGGA 1 cut(s) 866
Bsp143I GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
Bsp1720I GCTNAGC 3 cut(s) 683, 1065, 1241
Bsp19I CCATGG 1 cut(s) 424
BspANI GGCC 2 cut(s) 236, 536
BspCNI CTCAG 4 cut(s) 397, 523, 847, 1057
BspEI TCCGGA 1 cut(s) 866
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 445, 970, 1094
BspMAI CTGCAG 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 1012, 1286
BspQI GCTCTTC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 224
BsrBI CCGCTC 3 cut(s) 745, 899, 1228
BsrDI GCAATG 2 cut(s) 72, 655
BsrI ACTGG 3 cut(s) 296, 702, 1280
BssECI CCNNGG 7 cut(s) 424, 448, 504, 537, 664, 748, 1056
BssMI GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
BssSI CACGAG 2 cut(s) 74, 963
BssT1I CCWWGG 3 cut(s) 424, 448, 664
Bst2BI CACGAG 2 cut(s) 74, 963
Bst2UI CCWGG 2 cut(s) 749, 1307
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 384, 425
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 6, 315, 743, 897
BstDEI CTNAG 6 cut(s) 405, 531, 683, 855, 1065, 1241
BstDSI CCRYGG 3 cut(s) 424, 504, 537
BstENI CCTNNNNNAGG 1 cut(s) 1173
BstF5I GGATG 2 cut(s) 610, 1153
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 7 cut(s) 268, 328, 864, 882, 988, 1020, 1281
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
BstMWI GCNNNNNNNGC 9 cut(s) 166, 178, 187, 256, 368, 596, 645, 669, 989
BstNI CCWGG 2 cut(s) 749, 1307
BstNSI RCATGY 2 cut(s) 1030, 1201
BstSCI CCNGG 3 cut(s) 747, 1075, 1305
BstSFI CTRYAG 2 cut(s) 106, 124
BstSLI GKGCMC 2 cut(s) 299, 743
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 8 cut(s) 92, 144, 202, 205, 262, 374, 719, 967
BstV2I GAAGAC 2 cut(s) 191, 1158
BstX2I RGATCY 2 cut(s) 861, 1017
BstYI RGATCY 2 cut(s) 861, 1017
BsuRI GGCC 2 cut(s) 236, 536
BtgI CCRYGG 3 cut(s) 424, 504, 537
BtsCI GGATG 2 cut(s) 610, 1153
BtsI GCAGTG 2 cut(s) 741, 1123
BtsIMutI CAGTG 5 cut(s) 471, 695, 741, 1123, 1273
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 6, 315, 743, 897
CfoI GCGC 1 cut(s) 707
Cfr13I GGNCC 2 cut(s) 234, 460
CseI GACGC 1 cut(s) 196
CspCI CAANNNNNGTGG 2 cut(s) 777, 812
CviAII CATG 7 cut(s) 86, 425, 913, 989, 1027, 1198, 1249
DdeI CTNAG 6 cut(s) 405, 531, 683, 855, 1065, 1241
DpnI GATC 7 cut(s) 267, 327, 863, 881, 987, 1019, 1280
DpnII GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
DrdI GACNNNNNNGTC 1 cut(s) 1301
DseDI GACNNNNNNGTC 1 cut(s) 1301
Eam1104I CTCTTC 2 cut(s) 384, 425
EarI CTCTTC 2 cut(s) 384, 425
EciI GGCGGA 2 cut(s) 196, 898
Eco130I CCWWGG 3 cut(s) 424, 448, 664
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 978
EcoNI CCTNNNNNAGG 1 cut(s) 1173
EcoRII CCWGG 2 cut(s) 747, 1305
EcoRV GATATC 1 cut(s) 755
EcoT14I CCWWGG 3 cut(s) 424, 448, 664
ErhI CCWWGG 3 cut(s) 424, 448, 664
FaeI CATG 7 cut(s) 89, 428, 916, 992, 1030, 1201, 1252
FaqI GGGAC 1 cut(s) 1138
FatI CATG 7 cut(s) 85, 424, 912, 988, 1026, 1197, 1248
FauI CCCGC 3 cut(s) 680, 750, 1233
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 2 cut(s) 879, 985
FokI GGATG 2 cut(s) 617, 1160
FspBI CTAG 5 cut(s) 135, 356, 366, 584, 1301
GlaI GCGC 1 cut(s) 706
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 731
HaeIII GGCC 2 cut(s) 236, 536
HapII CCGG 5 cut(s) 199, 596, 867, 972, 1077
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 707
Hin1II CATG 7 cut(s) 89, 428, 916, 992, 1030, 1201, 1252
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 5 cut(s) 395, 498, 553, 620, 1253
HpaII CCGG 5 cut(s) 199, 596, 867, 972, 1077
HphI GGTGA 2 cut(s) 839, 1037
Hpy166II GTNNAC 3 cut(s) 79, 469, 1045
Hpy188I TCNGA 3 cut(s) 282, 460, 784
Hpy188III TCNNGA 6 cut(s) 356, 627, 838, 867, 937, 1145
Hpy8I GTNNAC 3 cut(s) 79, 469, 1045
Hpy99I CGWCG 2 cut(s) 259, 266
HpyAV CCTTC 8 cut(s) 48, 316, 344, 595, 685, 695, 799, 1031
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 7 cut(s) 8, 108, 362, 437, 916, 1192, 1292
HpyF10VI GCNNNNNNNGC 9 cut(s) 166, 178, 187, 256, 368, 596, 645, 669, 989
HpyF3I CTNAG 6 cut(s) 405, 531, 683, 855, 1065, 1241
Hsp92II CATG 7 cut(s) 89, 428, 916, 992, 1030, 1201, 1252
HspAI GCGC 1 cut(s) 705
Kpn2I TCCGGA 1 cut(s) 866
Ksp22I TGATCA 2 cut(s) 879, 985
Kzo9I GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 7 cut(s) 201, 750, 869, 974, 1233, 1270, 1309
Lsp1109I GCAGC 8 cut(s) 92, 144, 202, 205, 262, 374, 719, 967
LweI GCATC 3 cut(s) 349, 419, 921
MaeI CTAG 5 cut(s) 135, 356, 366, 584, 1301
MalI GATC 7 cut(s) 267, 327, 863, 881, 987, 1019, 1280
MbiI CCGCTC 3 cut(s) 745, 899, 1228
MboI GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
MflI RGATCY 2 cut(s) 861, 1017
MhlI GDGCHC 4 cut(s) 299, 420, 743, 1275
MluCI AATT 5 cut(s) 151, 569, 848, 875, 1232
MroI TCCGGA 1 cut(s) 866
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 1 cut(s) 920
MspI CCGG 5 cut(s) 199, 596, 867, 972, 1077
MspR9I CCNGG 3 cut(s) 749, 1077, 1307
MvaI CCWGG 2 cut(s) 749, 1307
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 9 cut(s) 166, 178, 187, 256, 368, 596, 645, 669, 989
NciI CCSGG 1 cut(s) 1077
NcoI CCATGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 772
NdeII GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
NlaIII CATG 7 cut(s) 89, 428, 916, 992, 1030, 1201, 1252
NlaIV GGNNCC 3 cut(s) 445, 970, 1094
NmeAIII GCCGAG 1 cut(s) 1037
NspI RCATGY 2 cut(s) 1030, 1201
NspV TTCGAA 1 cut(s) 337
PciI ACATGT 1 cut(s) 1026
PciSI GCTCTTC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 5 cut(s) 395, 498, 553, 620, 1253
PflMI CCANNNNNTGG 1 cut(s) 494
PfoI TCCNGGA 1 cut(s) 1305
PscI ACATGT 1 cut(s) 1026
Psp6I CCWGG 2 cut(s) 747, 1305
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 747, 1305
PspN4I GGNNCC 3 cut(s) 445, 970, 1094
PspPI GGNCC 2 cut(s) 234, 460
PstI CTGCAG 1 cut(s) 110
PsuI RGATCY 2 cut(s) 861, 1017
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 920
Sau3AI GATC 7 cut(s) 265, 325, 861, 879, 985, 1017, 1278
Sau96I GGNCC 2 cut(s) 234, 460
ScrFI CCNGG 3 cut(s) 749, 1077, 1307
SduI GDGCHC 4 cut(s) 299, 420, 743, 1275
SfaNI GCATC 3 cut(s) 349, 419, 921
SfcI CTRYAG 2 cut(s) 106, 124
SfuI TTCGAA 1 cut(s) 337
SinI GGWCC 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
Sse9I AATT 5 cut(s) 151, 569, 848, 875, 1232
SspMI CTAG 5 cut(s) 135, 356, 366, 584, 1301
StyD4I CCNGG 3 cut(s) 747, 1075, 1305
StyI CCWWGG 3 cut(s) 424, 448, 664
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 261, 337
TasI AATT 5 cut(s) 151, 569, 848, 875, 1232
TauI GCSGC 3 cut(s) 172, 1064, 1248
TfiI GAWTC 5 cut(s) 395, 498, 553, 620, 1253
Tru1I TTAA 1 cut(s) 920
Tru9I TTAA 1 cut(s) 920
TscAI CASTG 5 cut(s) 478, 702, 741, 1123, 1280
TseI GCWGC 8 cut(s) 105, 157, 190, 193, 250, 362, 707, 980
TspDTI ATGAA 4 cut(s) 402, 582, 612, 1164
TspGWI ACGGA 3 cut(s) 493, 554, 1022
TspRI CASTG 5 cut(s) 478, 702, 741, 1123, 1280
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 1173
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 2 cut(s) 1030, 1201
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 5 cut(s) 135, 356, 366, 584, 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.